cluster # 6072

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6072 cluster # 6072 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6072#0 length = 961 sequences # 3

consensus_6072#1 length = 127 sequences # 1

consensusID : consensus_6072#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 961
fasta sequence

                              [CTATGTTACGCACACATTGTGATAAGCATTTATGGAAGCATGTGTTACTATTGACAATGAACAATTATCATAGTGATCATGGTATACGAGCAGGCAATCTAGCTTGATTTCCAGTAGTGTTTACACCTTGATATTGATATTTAGCCTTCTTTTCAGATGGTTTAAGTATCTGAAATGAACATGTTAAATTCTCATCTACAGACATCATACCACCGGCATTATCAAATTCACCGCAATAATTTGGAGCAGAAAATAAAGTTACTAATTGACGACGACAAAAAAATTCGAAACCATCCTCAACTACTTGGTGCGCTCGACAAATTAAATCCATATCATGTCGGTTGAGAAATTTAGTAACTACATCTGGACCGAATGTGAAGCTCACACCACGATCATTTTCAG-CCCAACCATTAACATCTTTATCCGGATCTGACCATAAAATATCGCATAAAAGTCCTGTATCAGGAATATCTGACGGTCTCATGATACGTCGTATTTGATCCATATTTTGTAAATCTGGAGATAATCCACCATGACAACAAAATATTTTTGAATCTACAATTGCAGCGATTGGTAAACAGTTGAAGCAATCAGTGAACGTTTTCCATAATCGAACACTAAAACGTCGTTTACATTCATCATAAAATCCATATATCCGATTAATAGCAGCACATTCATGATTCCCACGAAGAAGGAAAAAGTTTTCTGGATGTTTAATTTTATACGCAAGTAGAAGGCAAATAGTTTCTAAACTCTGCTTGCCTCTGTCCACATAGTCTCCAAGAAACAGGTAGTTAGATTCTGGAGGAAAACCACCGTATTCGAAAAGACGTAACAAGTCTGTGTATTGGCCGTGAATATCACCGCAAATTTTCAAAGGAGCTTGTAATTCCAACAAAATAGGTTGTGATAAGAAAATTTGTCGTGAAGTAACACAGAGATATCCCTCGTGCCGATTCTG]

[+] EMBL CD118471             [CTATGTTACGCACACATTGTGATAAGCATTTATGGAAGCATGTGTTACTATTGACAATGAACAATTATCATAGTGATCATGGTATACGAGCAGGCAATCTAGCTTGATTTCCAGTAGTGTTTACACCTTGATATTGATATTTAGCCTTCTTTTCAGATGGTTTAAGTATCTGAAATGAACATGTTAAATTCTCATCTACAGACATCATACCACCGGCATTATCAAATTCACCGCAATAATTTGGAGCAGAAAATAAAGTTACTAATTGACGACGACAAAAAAATTCGAAACCATCCTCAACTACTTGGTGCGCTCGACAAATTAAATCCATATCATGTCGGTTGAGAAATTTAGTAACTACATCTGGACCGAATGTGAAGCTCACACCACGATCATTTTCAG CCCAACCATTAACATCTTTATCCGGATCTGACCATAAAATATCGCATAAAAGTCCTGTATCAGGAATATCTGACGGTCTCATGATACGTCGTATTTGATCCATATTTTGTAAATCTGGAGATAATCCACCATGACAACAAAATATTTTTGAATCTACAATTGCAGCGATTGGTAAACAGTTGAAGCAATCAGTGAACGTTTTCCATAATCGAACA                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD083568             [                                                                                                                                                                                                                                                                                                                                                                                                              TCAGCCCCAACCATTAACATCTTTATCCGGATCTGACCATAAAATATCGCATAAAAGTCCTGTATCAGGAATATCTGACGGTCTCATGATACGTCGTATTTGATCCATATTTTGTAAATCTGGAGATAATCCACCATGACAACAAAATATTTTTGAATCTACAATTGCAGCGATTGGTAAACAGTTGAAGCAATCAGTGAACGTTTTCCATAATCGAACACTAAAACGTCGTTTACATTCATCATAAAATCCATATATCCGATTAATAGCAGCACATTCATGATTCCCACGAAGAAGGAAAAAGTTTTCTGGATGTTTAATTTTATACGCAAGTAGAAGGCAAATAGTTTCTAAACTCTGCTTGCCTCTGTCCACATAGTCTCCAAGAAACAGGTAGTTAGATTCTGGAGGAAAACCACCGTATTCGAAAAGACGTAACAAGTCTGTGTATTGGCCGTGAATATCACCGCAAATTTTCAAAGGAGCTTGTAATTCCAACAAAATAGGTTGTGATAAGAAAATTTGTCGTGAAGTAACACAGAGATATCCCTCGTGCCGATTCTG]
[+] EMBL CD156172             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GATTGGTAAACAGTTGAAGCAATCAGTGAACGTTTTCCATAATCGAACACTAAAACGTCGTTTACATTCATCATAAAATCCATATATCCGATTAATAGCAGCACATCCATGATTCCCACGAAGAAGGAAAAAGTTTTCTGGATGTTTAATTTTATACGCAAGTAGAAGGCAAATAGTTTCTAAACTCTGCTTGCCTCTGTCCACATAGTCTCCAAGAAACAGGTAGTTAGATTCTGGAGGg                                                                                                                                                        ]




>consensus_6072#0
CTATGTTACGCACACATTGTGATAAGCATTTATGGAAGCATGTGTTACTATTGACAATGA
ACAATTATCATAGTGATCATGGTATACGAGCAGGCAATCTAGCTTGATTTCCAGTAGTGT
TTACACCTTGATATTGATATTTAGCCTTCTTTTCAGATGGTTTAAGTATCTGAAATGAAC
ATGTTAAATTCTCATCTACAGACATCATACCACCGGCATTATCAAATTCACCGCAATAAT
TTGGAGCAGAAAATAAAGTTACTAATTGACGACGACAAAAAAATTCGAAACCATCCTCAA
CTACTTGGTGCGCTCGACAAATTAAATCCATATCATGTCGGTTGAGAAATTTAGTAACTA
CATCTGGACCGAATGTGAAGCTCACACCACGATCATTTTCAGCCCAACCATTAACATCTT
TATCCGGATCTGACCATAAAATATCGCATAAAAGTCCTGTATCAGGAATATCTGACGGTC
TCATGATACGTCGTATTTGATCCATATTTTGTAAATCTGGAGATAATCCACCATGACAAC
AAAATATTTTTGAATCTACAATTGCAGCGATTGGTAAACAGTTGAAGCAATCAGTGAACG
TTTTCCATAATCGAACACTAAAACGTCGTTTACATTCATCATAAAATCCATATATCCGAT
TAATAGCAGCACATTCATGATTCCCACGAAGAAGGAAAAAGTTTTCTGGATGTTTAATTT
TATACGCAAGTAGAAGGCAAATAGTTTCTAAACTCTGCTTGCCTCTGTCCACATAGTCTC
CAAGAAACAGGTAGTTAGATTCTGGAGGAAAACCACCGTATTCGAAAAGACGTAACAAGT
CTGTGTATTGGCCGTGAATATCACCGCAAATTTTCAAAGGAGCTTGTAATTCCAACAAAA
TAGGTTGTGATAAGAAAATTTGTCGTGAAGTAACACAGAGATATCCCTCGTGCCGATTCT
G

consensusID : consensus_6072#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 127
fasta sequence

                              [GACATCCACCAAGTAGCTGAAGATGGTTTCTAATTTTTCTGTCGCCGTCAGTTAGTAACTTTATTTTCTGCTCCAAATTATTGCGGTGAATTTGATAATGCCGGAGGTATGATGTCTCTTTCCCCAA]

[+] EMBL CD192075             [GACATCCACCAAGTAGCTGAAGATGGTTTCTAATTTTTCTGTCGCCGTCAGTTAGTAACTTTATTTTCTGCTCCAAATTATTGCGGTGAATTTGATAATGCCGGAGGTATGATGTCTCTTTCCCCAA]




>consensus_6072#1
GACATCCACCAAGTAGCTGAAGATGGTTTCTAATTTTTCTGTCGCCGTCAGTTAGTAACT
TTATTTTCTGCTCCAAATTATTGCGGTGAATTTGATAATGCCGGAGGTATGATGTCTCTT
TCCCCAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6072#0      CTATGTTACGCACACATTGTGATAAGCATTTATGGAAGCATGTGTTACTATTGACAATGA 60
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      ACAATTATCATAGTGATCATGGTATACGAGCAGGCAATCTAGCTTGATTTCCAGTAGTGT 120
consensus_6072#1      --------------------GACAT-CCACCAAGTAGCTGAAGATGGTTTCTAAT----- 34
                                          *  ** * * ** * *    *   ** **** * *     

consensus_6072#0      TTACACCTTGATATTGATATTTAGCCTTCTTTTCAGATGGTTTAAGTATCTGAAATGAAC 180
consensus_6072#1      TTTTCTGTCGCCGTCAGTTAGTAACTTTATTTTC---TGCTCCAAATTATTGCGGTGAAT 91
                      **     * *   *   *   ** * ** *****   ** *  ** *   **   **** 

consensus_6072#0      ATGTTAAATTCTCATCTACAGACATCATACCACCGGCATTATCAAATTCACCGCAATAAT 240
consensus_6072#1      TTGATAATGCCGGAGGTATGATGTCTCTTTCCCCAA------------------------ 127
                       ** ***   *  *  **         *  * **                          

consensus_6072#0      TTGGAGCAGAAAATAAAGTTACTAATTGACGACGACAAAAAAATTCGAAACCATCCTCAA 300
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      CTACTTGGTGCGCTCGACAAATTAAATCCATATCATGTCGGTTGAGAAATTTAGTAACTA 360
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      CATCTGGACCGAATGTGAAGCTCACACCACGATCATTTTCAGCCCAACCATTAACATCTT 420
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      TATCCGGATCTGACCATAAAATATCGCATAAAAGTCCTGTATCAGGAATATCTGACGGTC 480
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      TCATGATACGTCGTATTTGATCCATATTTTGTAAATCTGGAGATAATCCACCATGACAAC 540
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      AAAATATTTTTGAATCTACAATTGCAGCGATTGGTAAACAGTTGAAGCAATCAGTGAACG 600
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      TTTTCCATAATCGAACACTAAAACGTCGTTTACATTCATCATAAAATCCATATATCCGAT 660
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      TAATAGCAGCACATTCATGATTCCCACGAAGAAGGAAAAAGTTTTCTGGATGTTTAATTT 720
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      TATACGCAAGTAGAAGGCAAATAGTTTCTAAACTCTGCTTGCCTCTGTCCACATAGTCTC 780
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      CAAGAAACAGGTAGTTAGATTCTGGAGGAAAACCACCGTATTCGAAAAGACGTAACAAGT 840
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      CTGTGTATTGGCCGTGAATATCACCGCAAATTTTCAAAGGAGCTTGTAATTCCAACAAAA 900
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      TAGGTTGTGATAAGAAAATTTGTCGTGAAGTAACACAGAGATATCCCTCGTGCCGATTCT 960
consensus_6072#1      ------------------------------------------------------------
                                                                                  

consensus_6072#0      G 961
consensus_6072#1      -