cluster # 609

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Schistosoma mansoni
cluster # 609 cluster # 609 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_609#0 length = 273 sequences # 1

consensus_609#1 length = 224 sequences # 1

consensusID : consensus_609#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 273
fasta sequence

                              [GGTTTAAGAATTAGGGTCATGGAAACGATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTAAAATCAAGGGGTGAATTAATTTTGAGCGACAATTCAGGACCTGTTATCTTAAATCTGATCTGGTCATCCATAAAATATAGTATTGCGAAGAAATTCGATACTTGATACACGATCGCTTTTTTATTGGAAATATATAAGTAAAAGCATTGAGTGTAGCCCATATGGGGGTTGAATAACTGTCAAAATGCAATGTGCATATTTATATA]

[+] EMBL CD157755             [GGTTTAAGAATTAGGGTCATGGAAACGATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTAAAATCAAGGGGTGAATTAATTTTGAGCGACAATTCAGGACCTGTTATCTTAAATCTGATCTGGTCATCCATAAAATATAGTATTGCGAAGAAATTCGATACTTGATACACGATCGCTTTTTTATTGGAAATATATAAGTAAAAGCATTGAGTGTAGCCCATATGGGGGTTGAATAACTGTCAAAATGCAATGTGCATATTTATATA]




>consensus_609#0
GGTTTAAGAATTAGGGTCATGGAAACGATTACAAACTGAAATCAGCCAAAATGCTGCGAC
TCAATTAAAATCAAGGGGTGAATTAATTTTGAGCGACAATTCAGGACCTGTTATCTTAAA
TCTGATCTGGTCATCCATAAAATATAGTATTGCGAAGAAATTCGATACTTGATACACGAT
CGCTTTTTTATTGGAAATATATAAGTAAAAGCATTGAGTGTAGCCCATATGGGGGTTGAA
TAACTGTCAAAATGCAATGTGCATATTTATATA

consensusID : consensus_609#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [TTGAATAGTAAGGAATATGATTTACAATCGATGGTCAGGTTTAAGAATTAGGTTTATGGTTTGTATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTTAAATCAATGGGTGAATTAATTTTGAGCGAAAATTCAGGACCTGTTATCTTAAATCTGATCTGTTCATCCATAAAATATAGTCTTGCCAAGAAATTCGATACTTGATACACGATCGTTTTT]

[+] EMBL CD157686             [TTGAATAGTAAGGAATATGATTTACAATCGATGGTCAGGTTTAAGAATTAGGTTTATGGTTTGTATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTTAAATCAATGGGTGAATTAATTTTGAGCGAAAATTCAGGACCTGTTATCTTAAATCTGATCTGTTCATCCATAAAATATAGTCTTGCCAAGAAATTCGATACTTGATACACGATCGTTTTT]




>consensus_609#1
TTGAATAGTAAGGAATATGATTTACAATCGATGGTCAGGTTTAAGAATTAGGTTTATGGT
TTGTATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTTAAATCAATGGGTGAAT
TAATTTTGAGCGAAAATTCAGGACCTGTTATCTTAAATCTGATCTGTTCATCCATAAAAT
ATAGTCTTGCCAAGAAATTCGATACTTGATACACGATCGTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_609#0      -------------------------------------GGTTTAAGAATTAGGGTCATGGA 23
consensus_609#1      TTGAATAGTAAGGAATATGATTTACAATCGATGGTCAGGTTTAAGAATTAGGTTTATGGT 60
                                                          *************** * **** 

consensus_609#0      AACGATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTAAAATCAAGGGGTGAAT 83
consensus_609#1      TTGTATTACAAACTGAAATCAGCCAAAATGCTGCGACTCAATTTAAATCAATGGGTGAAT 120
                         *************************************** ******* ********

consensus_609#0      TAATTTTGAGCGACAATTCAGGACCTGTTATCTTAAATCTGATCTGGTCATCCATAAAAT 143
consensus_609#1      TAATTTTGAGCGAAAATTCAGGACCTGTTATCTTAAATCTGATCTGTTCATCCATAAAAT 180
                     ************* ******************************** *************

consensus_609#0      ATAGTATTGCGAAGAAATTCGATACTTGATACACGATCGCTTTTTTATTGGAAATATATA 203
consensus_609#1      ATAGTCTTGCCAAGAAATTCGATACTTGATACACGATCGTTTTT---------------- 224
                     ***** **** **************************** ****                

consensus_609#0      AGTAAAAGCATTGAGTGTAGCCCATATGGGGGTTGAATAACTGTCAAAATGCAATGTGCA 263
consensus_609#1      ------------------------------------------------------------
                                                                                 

consensus_609#0      TATTTATATA 273
consensus_609#1      ----------