cluster # 6097

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Schistosoma mansoni
cluster # 6097 cluster # 6097 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6097#0 length = 893 sequences # 3

consensus_6097#1 length = 364 sequences # 1

consensusID : consensus_6097#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 893
fasta sequence

                              [CTGGCACGTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAAGGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGCAAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAAGCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAAGACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCGATAGCTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGGACAAAGCACAAAACAGAGAAGGATTATCCGCAGAGGAGGATCCTAAACGCCTTCGCCCTGGAGAAATAGATCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAGGATGAATTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGT-AAAAAAGCAAAGCGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCAAAAACGTCGAGAACTTCGAGCAGCTGGTCTGGGAACATTCTTAGGATTAGCACCGAAAACGAAACCATGCATGGATTATAATTCCGAAATTCCATTTGAGAAGCAACCTCCTAAAGGATTCTATGATACTAGTAGGGAAAAACCAGAAATCAAACCTATGGACTTTCAACGTTTAAGACTTTCAGACATCGAAAAAGAAAGTTTTATGGAAAGGGAGAAGCGTGAACGTAAAAAGGATGCTGAACGCCAGGCTAAACGTATGCAGTCTGATTTACCTGGACTTATTTTGCAACGTGGGAA]

[+] EMBL CD115881             [CTGGCACGTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAAGGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGCAAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAAGCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAAGACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCGATAGCTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGGACAAAGCACAAAACAGAGAAGGATTATCCGCAGAGGAGGATCCTAAACGCCTTCGCCCTGGAGAAATAGATCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAAGATGAATTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGT AAAAAAGCAAAGCGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCANAAACGTCGAGAACTTCGAGCAGCTGGTCTGGGAACATTCTTANGATT                                                                                                                                                                                                                                                            ]
[+] EMBL CD138604             [                                                                                                                                                                                                                                                                                                                                                                                                                   TTCGCCCTGGAGAAATAGATCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAGGATGAATTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGT AAAAAAGCAAAGCGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCAAAAACGTCGAGAACTTCGAGCAGCTGGTCTGGGGACATTCTTAGGATTAGCACCGAAAACGAAACCATGCATGGATTATAATTCCGAAATTCCATTTGAGAAGCAACCTCCTAAAGGATTCTATGATACTAGTAGGGAAAAACCAGAAATCAAACCTATGGACTTTCAACGTTTAAGACTTTCAGACATCGAAAAAGAAAGTTTTATGGAAAGGGAGAAGCGTGAACGTAAAAAGGATGCTGAACGCCAGGCTAAACGTATGCAGTCTGATTTACCTGGACTTATTTTGCAACGTGGGAA]
[+] EMBL CD188485             [                                                                                                                                                                                                                                                                                                                                                                                                                                      TCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAGGATGAATTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGTAAAAAAAGCAAAGCGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCAAAAACGTCGAGAACTTCGAGCAGCTGGTCTGGGAACATTCTTAGGATTAGCACCGAAAACGAAACCATGCATGGATTATAATTCCGAAATTCCATTTGAGAAGCAACCTCCTAAAGGATTCTATGATACTAGTAGGGAAAAACCAGAAATCAAACCTATGGACTTTCAACGTTTAAGACTTTCAGACATCGAAAAAGAAAGTTTTATGGAAAGGGAGAAGCGTGAACGTAAAAAGG                                                                ]




>consensus_6097#0
CTGGCACGTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAA
GGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGC
AAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAA
GCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAA
GACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCG
ATAGCTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGGACAAAGCA
CAAAACAGAGAAGGATTATCCGCAGAGGAGGATCCTAAACGCCTTCGCCCTGGAGAAATA
GATCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAGGATGAA
TTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGTAAAAAAGCAAAG
CGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCAAAAACGT
CGAGAACTTCGAGCAGCTGGTCTGGGAACATTCTTAGGATTAGCACCGAAAACGAAACCA
TGCATGGATTATAATTCCGAAATTCCATTTGAGAAGCAACCTCCTAAAGGATTCTATGAT
ACTAGTAGGGAAAAACCAGAAATCAAACCTATGGACTTTCAACGTTTAAGACTTTCAGAC
ATCGAAAAAGAAAGTTTTATGGAAAGGGAGAAGCGTGAACGTAAAAAGGATGCTGAACGC
CAGGCTAAACGTATGCAGTCTGATTTACCTGGACTTATTTTGCAACGTGGGAA

consensusID : consensus_6097#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 364
fasta sequence

                              [CTTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAAGGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGCAAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAAGCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAAGACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCGATAGTTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGTAACTCATAAATTCATTAT]

[+] EMBL CD132751             [CTTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAAGGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGCAAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAAGCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAAGACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCGATAGTTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGTAACTCATAAATTCATTAT]




>consensus_6097#1
CTTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAAGGGGGT
GTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGCAAGAAT
CAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAAGCTAGA
TGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAAGACGAA
AAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCGATAGTT
GGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGTAACTCATAAATTCA
TTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6097#0      CTGGCACGTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAA 60
consensus_6097#1      ------CTTTTCAGAAGACATCGCTACAAGTCGTTCATCATGCCTCGGATTAACATCAAA 54
                            * ****************************************************

consensus_6097#0      GGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGC 120
consensus_6097#1      GGGGGTGTTTGGAGGAACACTGAGGATGAAATTCTCAAAGCTGCTGTTATGAAATATGGC 114
                      ************************************************************

consensus_6097#0      AAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAA 180
consensus_6097#1      AAGAATCAGTGGGCAAGGATAGCTTCTTTGCTACACCGCAAAGCCGCTAAACAGTGCAAA 174
                      ************************************************************

consensus_6097#0      GCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAA 240
consensus_6097#1      GCTAGATGGTACGAATGGCTTGATCCCAGTGTCAAGAAAACAGAGTGGAGCCGTGAAGAA 234
                      ************************************************************

consensus_6097#0      GACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCG 300
consensus_6097#1      GACGAAAAGTTACTACACCTTGCAAAGCTTATGCCAACTCAGTGGCGAACAATCGCTCCG 294
                      ************************************************************

consensus_6097#0      ATAGCTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTGGACAAAGCA 360
consensus_6097#1      ATAGTTGGGAGAACTGCAAACCAATGTTTGGAACGCTATGAATACCTCTTG--TAACTCA 352
                      **** **********************************************   **  **

consensus_6097#0      CAAAACAGAGAAGGATTATCCGCAGAGGAGGATCCTAAACGCCTTCGCCCTGGAGAAATA 420
consensus_6097#1      TAAATTCATTAT------------------------------------------------ 364
                       ***      *                                                 

consensus_6097#0      GATCCAAATCCGGAGACCAAACCTGCCCGTCCAGATCCTGTTGATATGGATGAGGATGAA 480
consensus_6097#1      ------------------------------------------------------------
                                                                                  

consensus_6097#0      TTAGAAATGCTTTCAGAAGCCAGAGCACGGTTAGCCAATACACAGGGTAAAAAAGCAAAG 540
consensus_6097#1      ------------------------------------------------------------
                                                                                  

consensus_6097#0      CGTAAGGCTAGAGAACGTCAACTGGAAATTGCGCGAAGAATGGCTATGATGCAAAAACGT 600
consensus_6097#1      ------------------------------------------------------------
                                                                                  

consensus_6097#0      CGAGAACTTCGAGCAGCTGGTCTGGGAACATTCTTAGGATTAGCACCGAAAACGAAACCA 660
consensus_6097#1      ------------------------------------------------------------
                                                                                  

consensus_6097#0      TGCATGGATTATAATTCCGAAATTCCATTTGAGAAGCAACCTCCTAAAGGATTCTATGAT 720
consensus_6097#1      ------------------------------------------------------------
                                                                                  

consensus_6097#0      ACTAGTAGGGAAAAACCAGAAATCAAACCTATGGACTTTCAACGTTTAAGACTTTCAGAC 780
consensus_6097#1      ------------------------------------------------------------
                                                                                  

consensus_6097#0      ATCGAAAAAGAAAGTTTTATGGAAAGGGAGAAGCGTGAACGTAAAAAGGATGCTGAACGC 840
consensus_6097#1      ------------------------------------------------------------
                                                                                  

consensus_6097#0      CAGGCTAAACGTATGCAGTCTGATTTACCTGGACTTATTTTGCAACGTGGGAA 893
consensus_6097#1      -----------------------------------------------------