These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence [ACACGGGTCCTGTGATAGACCAATCAACCTCTACTGAGAGCGAATGTCTCTAGCTAACTCATTATATAGACTAGATAAACATGAAAGCATGGCAGAAGGGGATCGACAAAAGCATCTGGGCTTTGACCTTAAAACACAAGTCAGGATATATTCTTTTAAAATAATTTACGTCATAAAACTCTACACTCACCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACTAGAAGTGATGTTAACATAATTCCGTCAAGCATACCGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAACTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTTTTACTTCGTCTTGGACAAGGTTGTCTATTAAATAAAACTGTGATAATGTGAAGAATTACCTCTTCAGATGTTTGCAAATCATCCATTAT] [+] EMBL CD195373 [ACACGGGTCCTGTGATAGACCAATCAACCTCTACTGAGAGCGAATGTCTCTAGCTAACTCATTATATAGACTAGATAAACATGAAAGCATGGCAGAAGGGGATCGACAAAAGCATCTGGGCTTTGACCTTAAAACACAAGTCAGGATATATTCTTTTAAAATAATTTACGTCATAAAACTCTACACTCACCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACTAGAAGTGATGTTAACATAATTCCGTCAAGCATACCGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAACTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTTTTACTTCGTCTTGGACAAGGTTGTCTATTAAATAAAACTGTGATAATGTGAAGAATTACCTCTTCAGATGTTTGCAAATCATCCATTAT] consensusID : consensus_6098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 512 fasta sequence [GTCAACGAAAATATTATAAAGTTCATATCACGTTAAAACCCCAAAAAAACCAATGTTCACCAGTTGTTTAGAATACAGACGGTCTTAATACAATCTGATTAGTTGTTTTGAAACTATTTCTTTGGTCGACAAGGATTATATTGCTAAGCCAAACACTGTAACGATAAAATACATAGACTTGTTTTCCCATTTTACTGTACAACTCCCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAACTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTCTACTTCGTCTTGGACAAAGGTTGTCTCTTCAGATGTTTGCAAATCATCCATTATGCACTGAAACCAAATTACACGGCAGCTCGTGC] [+] EMBL BG931578 [GTCAACGAAAATATTATAAAGTTCATATCACGTTAAAACCCCAAAAAAACCAATGTTCACCAGTTGTTTAGAATACAGACGGTCTTAATACAATCTGATTAGTTGTTTTGAAACTATTTCTTTGGTCGACAAGGATTATATTGCTAAGCCAAACACTGTAACGATAAAATACATAGACTTGTTTTCCCATTTTACTGTACAACTCCCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTG ] [+] EMBL CD186751 [ ccatCACTGTAACGATAAAATACATAGACTTGTTTTCCCATTTTACTGTACAACTCCCGTCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTAACGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAA ] [-] EMBL AA629498 [ TCAGTAGTACTATCCCAATAACAAGAGCTTGCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGACTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAACTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTCTACTTCGTCTTGGACAAAGGTTGTCTCTTCAGATGTTTGCAAATCATCCATTATGCACTGAAACCAAATTACACGGCAGCTCGTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6098#0 ----ACACGGGTCCTGTGA----TAGACCA-ATCAACCTCTACTGAGAGCGAATGTCTCT 51 consensus_6098#1 GTCAACGAAAATATTATAAAGTTCATATCACGTTAAAACCCCAAAAAAACCAATGTTCAC 60 ** * * * * * * ** * ** * * * * ***** consensus_6098#0 AGCTAACTCATTATATAGAC----TAGATA-AACATGAAAGCATGGCAGAAGGGGATCGA 106 consensus_6098#1 CAGTTGTTTAGAATACAGACGGTCTTAATACAATCTGATTAGTTGTTTTGAAACTATTTC 120 * * * *** **** * *** ** *** ** * ** consensus_6098#0 CAAAAGCATCTGGGCTTTGACCTTAAAACACAA----GTCAGGATATATTCTTTTAAAAT 162 consensus_6098#1 TTTGGTCGACAAGGATTATATTGCTAAGCCAAACACTGTAACGATAAAATACATAGACTT 180 * * ** ** * ** * ** ** * **** * * * * * consensus_6098#0 AATTTACGTCATAAAACTCTACACTCACCGTCAGTAGTACTATCCCAATAACAAGAGCTT 222 consensus_6098#1 GTTTTCC--CATTTTACTGTACAACTCCCGTCAGTAGTACTATCCCAATAACAAGAGCTT 238 *** * *** *** **** ********************************* consensus_6098#0 GCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGACTAGAAGTGATGTT 282 consensus_6098#1 GCAGTATGTAGTCCAGCTCCACTTTTCTGCATTATTACACATGTGAC------------- 285 *********************************************** consensus_6098#0 AACATAATTCCGTCAAGCATACCGATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGA 342 consensus_6098#1 -----------------------GATGTACTTAAAAGGTTTTCCAAGTTTAGTCAGCTGA 322 ************************************* consensus_6098#0 CTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAA 402 consensus_6098#1 CTGAGGCATTGTTCAATCACAGACGAAGTCCACTGTTGTACTTTATTATGTGAATAAGAA 382 ************************************************************ consensus_6098#0 CTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTTTTACTTCGTCTTGGAC 462 consensus_6098#1 CTAGAACCAATGATGCCTTCTATGCTCTCTTTAACTATGTTTTCT-ACTTCGTCTTGGAC 441 ******************************************* * ************** consensus_6098#0 AA-GGTTGTCTATTAAATAAAACTGTGATAATGTGAAGAATTACCTCTTCAGAT--GTTT 519 consensus_6098#1 AAAGGTTGTCTCTT---CAGATGTTTGCAAATC--ATCCATTATGCACTGAAACCAAATT 496 ** ******** ** * * * ** *** * **** * * * ** consensus_6098#0 GCAAATCATCCATTAT 535 consensus_6098#1 ACACGGCAGCTCGTGC 512 ** ** * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||