cluster # 61

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Schistosoma mansoni
cluster # 61 cluster # 61 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_61#0 length = 383 sequences # 1

consensus_61#1 length = 175 sequences # 1

consensusID : consensus_61#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 383
fasta sequence

                              [AGTTAATAATTCAGCGACCAACGGTTGAACATCACCTTCTAATCGTCCCGGTTGCCGAGTCGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAACATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAGCCCTAAATCTGGTGAAAATATCCACGCGTGATATTTGATCACAGTCTCAACAAGCATAATTTTATATTTAGAATCACTCATTAGTAATTCAGGTGAATCTTCACATGGTTGTACAAGATTTGGTGCAAATACTAACGCTAAATTATATGCTGTCATTTTATTCACTCCTTCACGAGCACTAACACGAGCTAAATGGGTAACAA]

[+] EMBL CD160279             [AGTTAATAATTCAGCGACCAACGGTTGAACATCACCTTCTAATCGTCCCGGTTGCCGAGTCGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAACATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAGCCCTAAATCTGGTGAAAATATCCACGCGTGATATTTGATCACAGTCTCAACAAGCATAATTTTATATTTAGAATCACTCATTAGTAATTCAGGTGAATCTTCACATGGTTGTACAAGATTTGGTGCAAATACTAACGCTAAATTATATGCTGTCATTTTATTCACTCCTTCACGAGCACTAACACGAGCTAAATGGGTAACAA]




>consensus_61#0
AGTTAATAATTCAGCGACCAACGGTTGAACATCACCTTCTAATCGTCCCGGTTGCCGAGT
CGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAAC
ATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAG
CCCTAAATCTGGTGAAAATATCCACGCGTGATATTTGATCACAGTCTCAACAAGCATAAT
TTTATATTTAGAATCACTCATTAGTAATTCAGGTGAATCTTCACATGGTTGTACAAGATT
TGGTGCAAATACTAACGCTAAATTATATGCTGTCATTTTATTCACTCCTTCACGAGCACT
AACACGAGCTAAATGGGTAACAA

consensusID : consensus_61#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence

                              [CTCGGTACCCCAAANACTCTTGAGCTCACCTTCTAATCGTCCCGGTTGCCGAGTCGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAACATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAGC]

[+] EMBL CD128755             [CTCGGTACCCCAAANACTCTTGAGCTCACCTTCTAATCGTCCCGGTTGCCGAGTCGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAACATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAGC]




>consensus_61#1
CTCGGTACCCCAAANACTCTTGAGCTCACCTTCTAATCGTCCCGGTTGCCGAGTCGAATC
CTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAACATCAAT
TTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_61#0      AGTTAATAATTCAGCGACCAACGGTTGAACATCACCTTCTAATCGTCCCGGTTGCCGAGT 60
consensus_61#1      -CTCGGTACCCCAAANACT----CTTGAGC-TCACCTTCTAATCGTCCCGGTTGCCGAGT 54
                      *   **   **   **      **** * *****************************

consensus_61#0      CGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAAC 120
consensus_61#1      CGAATCCTCAGAATCTATTGTTGAACCATCACATATTGTAGAATTATTCTTATTATTAAC 114
                    ************************************************************

consensus_61#0      ATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAG 180
consensus_61#1      ATCAATTTCAGGTGTTAAATCTTCTGTTGAATCTGGTGGGACAGAGCAACCACTTTCTAG 174
                    ************************************************************

consensus_61#0      CCCTAAATCTGGTGAAAATATCCACGCGTGATATTTGATCACAGTCTCAACAAGCATAAT 240
consensus_61#1      C----------------------------------------------------------- 175
                    *                                                           

consensus_61#0      TTTATATTTAGAATCACTCATTAGTAATTCAGGTGAATCTTCACATGGTTGTACAAGATT 300
consensus_61#1      ------------------------------------------------------------
                                                                                

consensus_61#0      TGGTGCAAATACTAACGCTAAATTATATGCTGTCATTTTATTCACTCCTTCACGAGCACT 360
consensus_61#1      ------------------------------------------------------------
                                                                                

consensus_61#0      AACACGAGCTAAATGGGTAACAA 383
consensus_61#1      -----------------------