cluster # 6120

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Schistosoma mansoni
cluster # 6120 cluster # 6120 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6120#0 length = 664 sequences # 3

consensus_6120#1 length = 411 sequences # 1

consensusID : consensus_6120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 664
fasta sequence

                              [GAGAGTTGGAAACATTTCAATCAGGATGGATTTGCCTCAAGTAGCGGACAGTGATGGTTCCTTAGACGAAGTGGACGATAGTCATAACGAAGCTCCTCAACAAGAACAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAGCCCGAGTCCATAAATGGACATGAAGTTGATACTGGTGAGAAAAGACAACGTAAGAAGGTTCAAAGATTATCTGAAACGTGGAATCGAGCCCATGAGGCCAAGGAAGAGGAACGAATCAAAGCAGTCCAAGCAGTCTCAGCAGCATTTGAGGGGGCTACAGGGACGGCACTCGGTGAAATCCC-ACTCATTGAAGCTTCCATACGAAAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGACCTGGCTCTGCAAGCAAAATACGTAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCTGAACAGTACGAAAAAAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAAGTTCTCCGCATCTTAAACCTAGAAGTTACAGGTACTCGAGAACAGTTGGCCTCTCGCTTATTGGAATTCCTACTCAAACCGACCGCTAATTCTGTGAAATGTAAAGGAAAGATCGTTAAAAAATATAAAAAAAATAAG]

[+] EMBL AI976181             [GAGAGTTGGAAACATTTCAATCAGGATGGATTTGCCTCAAGTAGCGGACAGTGATGGTTCCTTAGACGAAGTGGACGATAGTCATAACGAAGCTCCTCAACAAGAACAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAGCCCGAGTCCATAAATGGACATGAAGTTGATACTGGTGAGAAAAGACAACGTAAGAAGGTTCAAAGATTATCTGAAACGTGGAATCGAGCCCATGAGGCCAAGGAAGAGGAACGAATCAAAGCAGTCCAAGCAGTCTCAGCAGCATTTGAGGGGGCTACAGGGACGGCACTCGGTGAAATCCC ACTCATTGAAGCTTCCATACGAAAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGACCTGGCTCTGCAAGCAAAATACGTAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCTGAACAGTACGAANAAAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAAGTTCTCCGCATCTTAAACCTAGAAGTTA                                                                                                              ]
[-] EMBL CD184398             [                                                                                                                                                                                                                                                                                                                          GTGAAATCCCAACTCATTGGAGCTTCCATACGGAAAGCAAAGCCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGACCTGGCTCTGCAAGCAAAATACGTAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCTGAACAGTACGAAAAAAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAAGTTCTCCGCATCTTAAACCTAGAAGTTACAGGTACTCGAGAACAGTTGGCCTCTCGCTTATTGGAATTCCTACTCAAACCGACCGCTAATTCTGTGAAATGTAAAGGAAAGATCGTTAAAAAATATAAAAAAAATAAG]
[-] EMBL BG930913             [                                                                                                                                                                                                                                                                                                                                                                                                                    TCTGCAAGCAAAATACGTAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCTGAACAGTACGAAAAAAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAAGTTCTCCGCATCTTAAACCTAGAAGTTACAGGTACTCGAGAACAGTTGGCCTCT                                                                                    ]




>consensus_6120#0
GAGAGTTGGAAACATTTCAATCAGGATGGATTTGCCTCAAGTAGCGGACAGTGATGGTTC
CTTAGACGAAGTGGACGATAGTCATAACGAAGCTCCTCAACAAGAACAAGGTATCTCAGT
CTCTGAAGAAGAGGTTAAGCAGCCCGAGTCCATAAATGGACATGAAGTTGATACTGGTGA
GAAAAGACAACGTAAGAAGGTTCAAAGATTATCTGAAACGTGGAATCGAGCCCATGAGGC
CAAGGAAGAGGAACGAATCAAAGCAGTCCAAGCAGTCTCAGCAGCATTTGAGGGGGCTAC
AGGGACGGCACTCGGTGAAATCCCACTCATTGAAGCTTCCATACGAAAAGCAAAACCTGC
TAGCCTCAAATCGCTTCATTTAATAATATATGGTAGACCTGGCTCTGCAAGCAAAATACG
TAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCTGAACAGTACGAAAA
AAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAAGTTCTCCGCATCTT
AAACCTAGAAGTTACAGGTACTCGAGAACAGTTGGCCTCTCGCTTATTGGAATTCCTACT
CAAACCGACCGCTAATTCTGTGAAATGTAAAGGAAAGATCGTTAAAAAATATAAAAAAAA
TAAG

consensusID : consensus_6120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 411
fasta sequence

                              [GCGGCTCGAGCGCGATAATTTGAAAACATTTCAATAAGGATGGATTAGTCTCAAGGATGGGACAGCGATGGGTCCTTAGACGAATGGTACGATTATCATAAGGAAGCTCCTCAGCAAGAACAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAACCCGAGTCCATAAATGGACATGAAGTTGATACTGGCGATAAAAGACTACGTTAGAAGGTTCAAAGATTATCTGATACGTGGAATCAATCCCATGAGGCCAAGGAAGAGGAACGAATTAGAGCAGTCCAAGCAGTCTCACCAGCATTTGATGGGGCTACAGGGACGGCACTCGGTGAAATCCCACTCATTGAAGCTTACATACGAAAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGA]

[+] EMBL CD159434             [GCGGCTCGAGCGCGATAATTTGAAAACATTTCAATAAGGATGGATTAGTCTCAAGGATGGGACAGCGATGGGTCCTTAGACGAATGGTACGATTATCATAAGGAAGCTCCTCAGCAAGAACAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAACCCGAGTCCATAAATGGACATGAAGTTGATACTGGCGATAAAAGACTACGTTAGAAGGTTCAAAGATTATCTGATACGTGGAATCAATCCCATGAGGCCAAGGAAGAGGAACGAATTAGAGCAGTCCAAGCAGTCTCACCAGCATTTGATGGGGCTACAGGGACGGCACTCGGTGAAATCCCACTCATTGAAGCTTACATACGAAAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGA]




>consensus_6120#1
GCGGCTCGAGCGCGATAATTTGAAAACATTTCAATAAGGATGGATTAGTCTCAAGGATGG
GACAGCGATGGGTCCTTAGACGAATGGTACGATTATCATAAGGAAGCTCCTCAGCAAGAA
CAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAACCCGAGTCCATAAATGGACATGAA
GTTGATACTGGCGATAAAAGACTACGTTAGAAGGTTCAAAGATTATCTGATACGTGGAAT
CAATCCCATGAGGCCAAGGAAGAGGAACGAATTAGAGCAGTCCAAGCAGTCTCACCAGCA
TTTGATGGGGCTACAGGGACGGCACTCGGTGAAATCCCACTCATTGAAGCTTACATACGA
AAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6120#0      --------------GAGAGTTGGAAACATTTCAATCAGGATGGATTTGCCTCAAGTAGCG 46
consensus_6120#1      GCGGCTCGAGCGCGATAATTTGAAAACATTTCAATAAGGATGGATTAGTCTCAAGGATGG 60
                                       * *** ************ ********** * ****** *  *

consensus_6120#0      GACAGTGATGGTTCCTTAGACGAAGTGGACGATAGTCATAACGAAGCTCCTCAACAAGAA 106
consensus_6120#1      GACAGCGATGGGTCCTTAGACGAATGGTACGATTATCATAAGGAAGCTCCTCAGCAAGAA 120
                      ***** ***** ************  * *****  ****** *********** ******

consensus_6120#0      CAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAGCCCGAGTCCATAAATGGACATGAA 166
consensus_6120#1      CAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAACCCGAGTCCATAAATGGACATGAA 180
                      *********************************** ************************

consensus_6120#0      GTTGATACTGGTGAGAAAAGACAACGTAAGAAGGTTCAAAGATTATCTGAAACGTGGAAT 226
consensus_6120#1      GTTGATACTGGCGATAAAAGACTACGTTAGAAGGTTCAAAGATTATCTGATACGTGGAAT 240
                      *********** ** ******* **** ********************** *********

consensus_6120#0      CGAGCCCATGAGGCCAAGGAAGAGGAACGAATCAAAGCAGTCCAAGCAGTCTCAGCAGCA 286
consensus_6120#1      CAATCCCATGAGGCCAAGGAAGAGGAACGAATTAGAGCAGTCCAAGCAGTCTCACCAGCA 300
                      * * **************************** * ******************* *****

consensus_6120#0      TTTGAGGGGGCTACAGGGACGGCACTCGGTGAAATCCCACTCATTGAAGCTTCCATACGA 346
consensus_6120#1      TTTGATGGGGCTACAGGGACGGCACTCGGTGAAATCCCACTCATTGAAGCTTACATACGA 360
                      ***** ********************************************** *******

consensus_6120#0      AAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGACCTGGCTCT 406
consensus_6120#1      AAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGA--------- 411
                      ***************************************************         

consensus_6120#0      GCAAGCAAAATACGTAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCT 466
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      GAACAGTACGAAAAAAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAA 526
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      GTTCTCCGCATCTTAAACCTAGAAGTTACAGGTACTCGAGAACAGTTGGCCTCTCGCTTA 586
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      TTGGAATTCCTACTCAAACCGACCGCTAATTCTGTGAAATGTAAAGGAAAGATCGTTAAA 646
consensus_6120#1      ------------------------------------------------------------
                                                                                  

consensus_6120#0      AAATATAAAAAAAATAAG 664
consensus_6120#1      ------------------