These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6120#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 664 fasta sequence [GAGAGTTGGAAACATTTCAATCAGGATGGATTTGCCTCAAGTAGCGGACAGTGATGGTTCCTTAGACGAAGTGGACGATAGTCATAACGAAGCTCCTCAACAAGAACAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAGCCCGAGTCCATAAATGGACATGAAGTTGATACTGGTGAGAAAAGACAACGTAAGAAGGTTCAAAGATTATCTGAAACGTGGAATCGAGCCCATGAGGCCAAGGAAGAGGAACGAATCAAAGCAGTCCAAGCAGTCTCAGCAGCATTTGAGGGGGCTACAGGGACGGCACTCGGTGAAATCCC-ACTCATTGAAGCTTCCATACGAAAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGACCTGGCTCTGCAAGCAAAATACGTAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCTGAACAGTACGAAAAAAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAAGTTCTCCGCATCTTAAACCTAGAAGTTACAGGTACTCGAGAACAGTTGGCCTCTCGCTTATTGGAATTCCTACTCAAACCGACCGCTAATTCTGTGAAATGTAAAGGAAAGATCGTTAAAAAATATAAAAAAAATAAG] [+] EMBL AI976181 [GAGAGTTGGAAACATTTCAATCAGGATGGATTTGCCTCAAGTAGCGGACAGTGATGGTTCCTTAGACGAAGTGGACGATAGTCATAACGAAGCTCCTCAACAAGAACAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAGCCCGAGTCCATAAATGGACATGAAGTTGATACTGGTGAGAAAAGACAACGTAAGAAGGTTCAAAGATTATCTGAAACGTGGAATCGAGCCCATGAGGCCAAGGAAGAGGAACGAATCAAAGCAGTCCAAGCAGTCTCAGCAGCATTTGAGGGGGCTACAGGGACGGCACTCGGTGAAATCCC ACTCATTGAAGCTTCCATACGAAAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGACCTGGCTCTGCAAGCAAAATACGTAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCTGAACAGTACGAANAAAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAAGTTCTCCGCATCTTAAACCTAGAAGTTA ] [-] EMBL CD184398 [ GTGAAATCCCAACTCATTGGAGCTTCCATACGGAAAGCAAAGCCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGACCTGGCTCTGCAAGCAAAATACGTAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCTGAACAGTACGAAAAAAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAAGTTCTCCGCATCTTAAACCTAGAAGTTACAGGTACTCGAGAACAGTTGGCCTCTCGCTTATTGGAATTCCTACTCAAACCGACCGCTAATTCTGTGAAATGTAAAGGAAAGATCGTTAAAAAATATAAAAAAAATAAG] [-] EMBL BG930913 [ TCTGCAAGCAAAATACGTAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCTGAACAGTACGAAAAAAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAAGTTCTCCGCATCTTAAACCTAGAAGTTACAGGTACTCGAGAACAGTTGGCCTCT ] consensusID : consensus_6120#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [GCGGCTCGAGCGCGATAATTTGAAAACATTTCAATAAGGATGGATTAGTCTCAAGGATGGGACAGCGATGGGTCCTTAGACGAATGGTACGATTATCATAAGGAAGCTCCTCAGCAAGAACAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAACCCGAGTCCATAAATGGACATGAAGTTGATACTGGCGATAAAAGACTACGTTAGAAGGTTCAAAGATTATCTGATACGTGGAATCAATCCCATGAGGCCAAGGAAGAGGAACGAATTAGAGCAGTCCAAGCAGTCTCACCAGCATTTGATGGGGCTACAGGGACGGCACTCGGTGAAATCCCACTCATTGAAGCTTACATACGAAAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGA] [+] EMBL CD159434 [GCGGCTCGAGCGCGATAATTTGAAAACATTTCAATAAGGATGGATTAGTCTCAAGGATGGGACAGCGATGGGTCCTTAGACGAATGGTACGATTATCATAAGGAAGCTCCTCAGCAAGAACAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAACCCGAGTCCATAAATGGACATGAAGTTGATACTGGCGATAAAAGACTACGTTAGAAGGTTCAAAGATTATCTGATACGTGGAATCAATCCCATGAGGCCAAGGAAGAGGAACGAATTAGAGCAGTCCAAGCAGTCTCACCAGCATTTGATGGGGCTACAGGGACGGCACTCGGTGAAATCCCACTCATTGAAGCTTACATACGAAAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6120#0 --------------GAGAGTTGGAAACATTTCAATCAGGATGGATTTGCCTCAAGTAGCG 46 consensus_6120#1 GCGGCTCGAGCGCGATAATTTGAAAACATTTCAATAAGGATGGATTAGTCTCAAGGATGG 60 * *** ************ ********** * ****** * * consensus_6120#0 GACAGTGATGGTTCCTTAGACGAAGTGGACGATAGTCATAACGAAGCTCCTCAACAAGAA 106 consensus_6120#1 GACAGCGATGGGTCCTTAGACGAATGGTACGATTATCATAAGGAAGCTCCTCAGCAAGAA 120 ***** ***** ************ * ***** ****** *********** ****** consensus_6120#0 CAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAGCCCGAGTCCATAAATGGACATGAA 166 consensus_6120#1 CAAGGTATCTCAGTCTCTGAAGAAGAGGTTAAGCAACCCGAGTCCATAAATGGACATGAA 180 *********************************** ************************ consensus_6120#0 GTTGATACTGGTGAGAAAAGACAACGTAAGAAGGTTCAAAGATTATCTGAAACGTGGAAT 226 consensus_6120#1 GTTGATACTGGCGATAAAAGACTACGTTAGAAGGTTCAAAGATTATCTGATACGTGGAAT 240 *********** ** ******* **** ********************** ********* consensus_6120#0 CGAGCCCATGAGGCCAAGGAAGAGGAACGAATCAAAGCAGTCCAAGCAGTCTCAGCAGCA 286 consensus_6120#1 CAATCCCATGAGGCCAAGGAAGAGGAACGAATTAGAGCAGTCCAAGCAGTCTCACCAGCA 300 * * **************************** * ******************* ***** consensus_6120#0 TTTGAGGGGGCTACAGGGACGGCACTCGGTGAAATCCCACTCATTGAAGCTTCCATACGA 346 consensus_6120#1 TTTGATGGGGCTACAGGGACGGCACTCGGTGAAATCCCACTCATTGAAGCTTACATACGA 360 ***** ********************************************** ******* consensus_6120#0 AAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGACCTGGCTCT 406 consensus_6120#1 AAAGCAAAACCTGCTAGCCTCAAATCGCTTCATTTAATAATATATGGTAGA--------- 411 *************************************************** consensus_6120#0 GCAAGCAAAATACGTAGTAGTCTACGCAAATTTCGAGGTTTTGGTTTCGAAATGGGTTCT 466 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 GAACAGTACGAAAAAAAATCAACATATATTCAACAACGCCCTGCTTGTGATCTACGAGAA 526 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 GTTCTCCGCATCTTAAACCTAGAAGTTACAGGTACTCGAGAACAGTTGGCCTCTCGCTTA 586 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 TTGGAATTCCTACTCAAACCGACCGCTAATTCTGTGAAATGTAAAGGAAAGATCGTTAAA 646 consensus_6120#1 ------------------------------------------------------------ consensus_6120#0 AAATATAAAAAAAATAAG 664 consensus_6120#1 ------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||