cluster # 6129

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Schistosoma mansoni
cluster # 6129 cluster # 6129 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6129#0 length = 496 sequences # 3

consensus_6129#1 length = 396 sequences # 1

consensusID : consensus_6129#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 496
fasta sequence

                              [GCTTTTAGTGCTGCTTTTGTGTGTTCTTGTTGAAGTTTTTGCTGTAATTTGCTTATCTGTTCCCGGCAATTCTCCTGCTGTTTTTCCAGTTCTTTTATCCTATCATCATGACGTTTTATTTCAGATGTTATGTAGCTTATCCTTTTACTGACTGTTTCTTTAGCTTCAGATAAGTCTTGTTTGACTAAGACTGGGCCAACAAGTTTATATATAGTATTGGATTCATTTAAAAACCCAAGGTCTTCAATAACATTTTCATTTTCAGAAAGCTGGGCAGATAACTGACGATGGAGCTGGAAAATCTTCTGTATTTCTTTTTGGATACCTTGTGCTTTTTCTATTTCTGCATTTAGCCGCTTATAGACAGGTTCCATCACCTGATTTGTGTAACAAAGTATTTACTTGGTATCTGAGGAGTTGTATGGATCAGTTGAAGTCATTTGTCCAGATAGTGATCTAGGAGTTATGAGAAGTCAAAGCCTTCAAACCACTGTAA]

[+] EMBL CD140181             [GCTTTTAGTGCTGCTTTTGTGTGTTCTTGTTGAAGTTTTTGCTGTAATTTGCTTATCTGTTCCCGGCAATTCTCCTGCTGTTTTTCCAGTTCTTTTATCCTATCATCATGACGTTTTATTTCAGATGTTATGTAGCTTATCCTTTTACTGACTGTTTCTTTAGCTTCAGATAAGTCTTGTTTGACTAAGACTGGGCCAACAAGTTTATATATAGTATTGGATTCATTTAAAAACCCAAGGTCTTCAATAACATTTTCATTTTCAGAAAGCTGGGCAGATAACTGACGATGGAGCTGGAAAATCTTCTGTATTTCTTTTTGGATACCTTGTGCTTTTTCTATTTCTGCATTTAGCCGCTTATAGACAGGTTCCATCACCTGATTTGTGTAACAAAGTATTTACTTGGTATCTGAGGAGTTGTATGGATCAGTTGAAGTCA                                                         ]
[-] EMBL CD154841             [                     TGTTCTTGTTGAAGTTTTTACTGTAATTTGCTTATCTGTTCCCGGCAATTCTCCTGCTGTTTTTCCAGTTCTTTTATCCTATCATCATGACGTTTTATTTCAGATGTTATGTAGCTTATCCTTT                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD199678             [                                                                                                                                                                TAGCTTCAGATAAGTCCTGTTTGACTAAGACTGAGCCAACAAGTTTATATATAGTATTGGATTCATTTAAAAACCCAAGGTCTTCAATAACATTTTCATTTTCAGAAAGCTGGGCAGATAACTGACGATGGAGCTGGAAAATCTTCTGTATTTCTTTTTGGATACCTTGTGCTTTTTCTATTTCTGCATTTAGCCGCTTATAGACAGGTTCCATCACCTGATTTGTGTAACAAAGTATTTACTTGGTATCTGGGGAGTTGTATGGATCAGTTGAAGTTTTTTGTCCAGATAGTGATCTAGGAGTTATGAGAAGTCAAAGCCTTCAAACCACTGTAA]




>consensus_6129#0
GCTTTTAGTGCTGCTTTTGTGTGTTCTTGTTGAAGTTTTTGCTGTAATTTGCTTATCTGT
TCCCGGCAATTCTCCTGCTGTTTTTCCAGTTCTTTTATCCTATCATCATGACGTTTTATT
TCAGATGTTATGTAGCTTATCCTTTTACTGACTGTTTCTTTAGCTTCAGATAAGTCTTGT
TTGACTAAGACTGGGCCAACAAGTTTATATATAGTATTGGATTCATTTAAAAACCCAAGG
TCTTCAATAACATTTTCATTTTCAGAAAGCTGGGCAGATAACTGACGATGGAGCTGGAAA
ATCTTCTGTATTTCTTTTTGGATACCTTGTGCTTTTTCTATTTCTGCATTTAGCCGCTTA
TAGACAGGTTCCATCACCTGATTTGTGTAACAAAGTATTTACTTGGTATCTGAGGAGTTG
TATGGATCAGTTGAAGTCATTTGTCCAGATAGTGATCTAGGAGTTATGAGAAGTCAAAGC
CTTCAAACCACTGTAA

consensusID : consensus_6129#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 396
fasta sequence

                              [TTTCGGAGTTACTGAGAGACAATTTACAGTGGTTTGAAGGCTTTGACTTCTCATAACTCCTAGATCACTATCTGGACAAAAAGTAACTTGGTTTTATTAAATATGTACCTATTAGTATGTTGATGGTTAGTATGGACCATGTTGGGAAGTACCAACAATATCTTTAGTTCGTCGGCTCTCTGTATTAAACTTCAGCTCTTCTATATAAATTATGTGGTTTATTGGTGGGATAACTTGTTCTGGAATTGTCATATGTTTCCATTTAGTAGTGGCCATTAATTAATCAATGGTATCGTCTTAAATCGTATTCATCGATGACACACACAGGTTTCCAGTTTTCAGTGGCAGGTACATTCAGTGCATTGATTTTTTATGGTAGTTACTCAGCAAGAGACA]

[+] EMBL CD187433             [TTTCGGAGTTACTGAGAGACAATTTACAGTGGTTTGAAGGCTTTGACTTCTCATAACTCCTAGATCACTATCTGGACAAAAAGTAACTTGGTTTTATTAAATATGTACCTATTAGTATGTTGATGGTTAGTATGGACCATGTTGGGAAGTACCAACAATATCTTTAGTTCGTCGGCTCTCTGTATTAAACTTCAGCTCTTCTATATAAATTATGTGGTTTATTGGTGGGATAACTTGTTCTGGAATTGTCATATGTTTCCATTTAGTAGTGGCCATTAATTAATCAATGGTATCGTCTTAAATCGTATTCATCGATGACACACACAGGTTTCCAGTTTTCAGTGGCAGGTACATTCAGTGCATTGATTTTTTATGGTAGTTACTCAGCAAGAGACA]




>consensus_6129#1
TTTCGGAGTTACTGAGAGACAATTTACAGTGGTTTGAAGGCTTTGACTTCTCATAACTCC
TAGATCACTATCTGGACAAAAAGTAACTTGGTTTTATTAAATATGTACCTATTAGTATGT
TGATGGTTAGTATGGACCATGTTGGGAAGTACCAACAATATCTTTAGTTCGTCGGCTCTC
TGTATTAAACTTCAGCTCTTCTATATAAATTATGTGGTTTATTGGTGGGATAACTTGTTC
TGGAATTGTCATATGTTTCCATTTAGTAGTGGCCATTAATTAATCAATGGTATCGTCTTA
AATCGTATTCATCGATGACACACACAGGTTTCCAGTTTTCAGTGGCAGGTACATTCAGTG
CATTGATTTTTTATGGTAGTTACTCAGCAAGAGACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6129#0      GCTTTTAGTGCTGCTTTTGTGTGTTCTTGTTGAAGTTTTTGCTGTAATTTGCTTATCTGT 60
consensus_6129#1      ---------------------------TTTCGGAGTTACTGAGAGACAATTTACAGTGGT 33
                                                 * * * ****  **    *   *    *   **

consensus_6129#0      TCCCGGCAATTCTCCTGCTGTTTTTCCAGTTCTTTTATCCTATCATCATGACGTTTTATT 120
consensus_6129#1      TTGAAGGCTTTGACTTCTCATAACTCCTAGATCACTATCTGGACAAAAAGTAACTTGGTT 93
                      *    *   **  * *    *   ***        ****    **  * *    **  **

consensus_6129#0      TCAGATGTTATGTAGCTTATCCTTTTACTGACTGTTTCTTTAGCTTCAGATAAGTCTTGT 180
consensus_6129#1      TTATTAAATATGTA-CCTATTAGTATGTTGATGGTTAGT----------ATGGACCATGT 142
                      * *     ****** * ***   * *  ***  ***  *          **    * ***

consensus_6129#0      TTGACTAAGACTGGGCCAACAAGTTTATATATAGTATTGGATTCATTTAA-AAACCCAAG 239
consensus_6129#1      T------GGGAAGTACCAACAA-TATCTTTAGTTCGTCGGCTCTCTGTATTAAACTTCAG 195
                      *       *   *  ******* * * * **     * ** *   * **  ****   **

consensus_6129#0      GTCTTCAATAACATTTTCATTTTCAGAAAGCTGGGCAGATAACTGACGATGGAGCTGGAA 299
consensus_6129#1      CTCTTCTATATAAATTATGTGGTT----TATTGGTGGGATAACTTGTTCTGGAATTG--- 248
                       ***** ***  * **   *  *        ***   *******     ****  **   

consensus_6129#0      AATCTTCTGTATTTCTTTTTGGATACCTTGTGCTTTTTCTATTTCTGCATTTAGCCGCTT 359
consensus_6129#1      --TCATATGTTTCCATTTAGTAGTGGCCATTAATTAATCAATGGTATCGTCTTAAATCGT 306
                        ** * *** *   ***     *  *   *  **  ** **     * * *     * *

consensus_6129#0      ATAGACAGGTTCCATCACCTGATTTGTGTAACAAAGTATTTACTTGGTATCTGAGGAGTT 419
consensus_6129#1      ATTCATCGATGACACACACAGGTTTCC-------AGTTTTCAGTGGCAGGTACATTCAGT 359
                      **  *  * *  **    * * ***         *** ** * * *       *     *

consensus_6129#0      GTATGGATCAGTTGAAGTCATTTGTCCAGATAGTGATCTAGGAGTTATGAGAAGTCAAAG 479
consensus_6129#1      GCATTGATTTTTTATGGT-AGTTACTCAGCAAGAGACA---------------------- 396
                      * ** ***   **   ** * **   ***  ** **                        

consensus_6129#0      CCTTCAAACCACTGTAA 496
consensus_6129#1      -----------------