cluster # 6131

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Schistosoma mansoni
cluster # 6131 cluster # 6131 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6131#0 length = 622 sequences # 3

consensus_6131#1 length = 250 sequences # 1

consensusID : consensus_6131#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 622
fasta sequence

                              [CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAGTAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCACTTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAGGTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATGTATCAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTTTATACAATCTAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCATGTATTACATAGTAATCTACATGCAAGACGTTTCTATGAAAATCGTGGTTTTATTTGTCTTCATGTACGTCCTGGTTGTTATACAATTGATGGTAGATCTGCTGATGGTTGTACATATGTTCTTCATACAAATGGTGGACATTT]

[+] EMBL AI976769             [CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAGTAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCACTTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAGGTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATGTATCAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTTTATACAATCTAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCATGTATTACATAGTAATCTACATGCAAGACGTTTCTATGAAAATCGTGGTTTTATTTGTCTTCATGTACGTCCTGGTTGTTATACAATTGATGGTAGATCTGCTGATGGTTGTACATATGTTCTTCATACAAATGGTGGACATTT]
[+] EMBL AI977356             [CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAGTAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCACTTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAGGTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATGTATCAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTTTATACAATCTAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCATGTATTACATAGTAATCTACATGCCAGACGTTTCT                                                                                                             ]
[+] EMBL AI976766             [CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAGTAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCACTTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAGGTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATATAAATGGAGAGCATTGTTATTCTGACAGCAATGTATCAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTTTATACAATCTAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCATGTATTACAT                                                                                                                                      ]




>consensus_6131#0
CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAG
TAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCAC
TTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAG
GTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATT
GGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTG
TGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATGTAT
CAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTT
TATACAATCTAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCATG
TATTACATAGTAATCTACATGCAAGACGTTTCTATGAAAATCGTGGTTTTATTTGTCTTC
ATGTACGTCCTGGTTGTTATACAATTGATGGTAGATCTGCTGATGGTTGTACATATGTTC
TTCATACAAATGGTGGACATTT

consensusID : consensus_6131#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 250
fasta sequence

                              [GTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATTCTCATCGTGAATACTACTCACCAGTAGTACGTAGCGGAAAGGCGTGTAGAAGTTGCTACAGTCGACAACTGAAGA]

[-] EMBL CD159828             [GTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATTCTCATCGTGAATACTACTCACCAGTAGTACGTAGCGGAAAGGCGTGTAGAAGTTGCTACAGTCGACAACTGAAGA]




>consensus_6131#1
GTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATTGG
TTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTGTG
AATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATTCTCAT
CGTGAATACTACTCACCAGTAGTACGTAGCGGAAAGGCGTGTAGAAGTTGCTACAGTCGA
CAACTGAAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6131#0      CTCTCATATCTATTGCAGCAGTTTCAGGCGATGACTTAGTTGGCATCTTGGTAGGGACAG 60
consensus_6131#1      ------------------------------------------------------------
                                                                                  

consensus_6131#0      TAACGACCTTGGGAAACTGTAGTGCTGATGATTATAAATTACTTGCATCGAGTTTTCCAC 120
consensus_6131#1      ------------------------------------------------------------
                                                                                  

consensus_6131#0      TTTCGACAGGAGTCGCATACATACTTAGTTTAGGTGTCACGTCATCATTCAGGTCCAGAG 180
consensus_6131#1      ------------------------------------------------------------
                                                                                  

consensus_6131#0      GTGTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATT 240
consensus_6131#1      --GTTGCATCTATTTTATTGAGATCATTTATTGGTTATGTGTCTGGTGAAAATATGGATT 58
                        **********************************************************

consensus_6131#0      GGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTG 300
consensus_6131#1      GGTTAAACGATTCTAATCATCAAGTTGATTTATCTTGTTCAGATCTATTCAGTCAAACTG 118
                      ************************************************************

consensus_6131#0      TGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAATGTAT 360
consensus_6131#1      TGAATGGGAATCTAGATCACTATAGAAATGGAGAGCATTGTTATTCTGACAGCAAT-TCT 177
                      ******************************************************** * *

consensus_6131#0      CAACTGAGTGTAGCGATACATCTCCATCTACAATTTGGCGTGTCAAAGATTATAAATCTT 420
consensus_6131#1      CATC---GTG----AATACTACTC-ACCAGTAGTACGTAGCGGAAAGGCGTGTAGAAGTT 229
                      ** *   ***     ****  *** * *   * *  *  * *  ** *  * ** *  **

consensus_6131#0      TATACAATC--TAATTACACAATTACCACATGTCTCTCCTGTACGAGCTGTTTATCTTCA 478
consensus_6131#1      GCTACAGTCGACAACTGAAGA--------------------------------------- 250
                        **** **   ** *  * *                                       

consensus_6131#0      TGTATTACATAGTAATCTACATGCAAGACGTTTCTATGAAAATCGTGGTTTTATTTGTCT 538
consensus_6131#1      ------------------------------------------------------------
                                                                                  

consensus_6131#0      TCATGTACGTCCTGGTTGTTATACAATTGATGGTAGATCTGCTGATGGTTGTACATATGT 598
consensus_6131#1      ------------------------------------------------------------
                                                                                  

consensus_6131#0      TCTTCATACAAATGGTGGACATTT 622
consensus_6131#1      ------------------------