These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 850 fasta sequence [CGAGGCAGAATCTGGCACGAGGGGAATTGCTAAAGAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGAGTCAGGACAAGGTTGCTGCAGCTTACGCTGATCTAAGACGGGAATCCATGATAACTGGGAGCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTCGTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTTAATATGGCTCTCCGTGTCATGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTTTCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGGAGTCAAGAGTGGCGCATCGAAGTTACTGAACGCGAATTTGCTGAACGAGCCAAGCAGATCAACATCAGTTCTGTTCGTGCATTCTTACAAAGTGACCTTTTCAAGTCACATCATTTTGTGTATGATGCCAGTCGAAAAGTTATCGTTCATACGGTATAAATGACAATAAATTGGTACTAAACTAGATTCTCACTTTATACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATTGACCTGTTATACTTATTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCATGGTCCTATGATTGTTGTAAAATACTATGATTTGTACGTCTCATCGTTTTTTTTATGCTAATCAAATAAATTTTTGACCATTAATAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD084173 [CGAGGCAGAATCTGGCACGAGGGGAATTGCTAAAGAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGAGTCAGGACAAGGTTGCTGCAGCTTACGCTGATCTAAGACGGGAATCCATGATAACTGGGAGCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTCGTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTTAATATGGCTCTCCGTGTCATGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTTTCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGGAGTCAAGAGTGGCGCATCGAAGTTACTGAACGCGAATTTGCTGAACGAGCCAAGCAGATCAACATCAGTTCTGTTCGTGCATTCTTACAAAGTGACCTTTTCAAGTCACATCATT ] [-] EMBL AI395424 [ TGAGCATTCTTGGCGACACCCAAGAATTG TATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGGAGTCAAGAGTGGCGCATCGAAGTTACTGAACGCGAATTTGCTGAACGAGCCAAGCAGATAAACATCAGTTCTGTTCGTGCATTCTTACAAAGTGACCTTTTCAAGTCACATCATTTTGTGTATGATGCCAGTCGAAAAGTTATCGTTCATACGGTATAAATGACAATAAATTGGTACTAAACTAGATTCTCACTTTATACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATTGACCTGTTATACTTATTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCATGGTCCTATGATTGTTGTAAAATACTATGATTTGTACGTCTCATCGTTTTTTTTATGCTAATCAAATAAATTTTTGACCATTAATAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_6138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [TGGTGTTCCCCGAAGTGGTTCTTATGCAGACATCCAACCACTAGATCAGGAATTGCTAAAGAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGATCAGGACAAGGTTGCTGCAGCTTACGCTGATCTAAGACGGGAATCCATGATAACTGGGAGCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTCGTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTTAATATGGCTCTCCGTGTCATGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTTTCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGG] [+] EMBL CD195570 [TGGTGTTCCCCGAAGTGGTTCTTATGCAGACATCCAACCACTAGATCAGGAATTGCTAAAGAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGATCAGGACAAGGTTGCTGCAGCTTACGCTGATCTAAGACGGGAATCCATGATAACTGGGAGCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTCGTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTTAATATGGCTCTCCGTGTCATGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTTTCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAACAGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGG] consensusID : consensus_6138#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [TATTATCATTATTATGGTTGCTAAAGTATTAGTTACACTTGTTTCATACATACCCACATTTAGTTACTTTATTGATTTTTTCAGGACAATAAATTGGTACTAAACTAGATTCTCACTTTATACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATTGACCTGTTATACTTATTTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCATGGTCCTATGATTGTTGTAAAATACTATGATTTGTACGTCCCATCGTTTTTTTATGCTAATCAAATAAATTT] [+] EMBL AW087127 [TATTATCATTATTATGGTTGCTAAAGTATTAGTTACACTTGTTTCATACATACCCACATTTAGTTACTTTATTGATTTTTTCAGGACAATAAATTGGTACTAAACTAGATTCTCACTTTATACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATTGACCTGTTATACTTATTTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCATGGTCCTATGATTGTTGTAAAATACTATGATTTGTACGTCCCATCGTTTTTTTATGCTAATCAAATAAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6138#0 ---------------------CGAGGCAGA-ATCTGGC-ACGAGG---GGAATTGCTAAA 34 consensus_6138#1 TGGTGTTCCCCGAAGTGGTTCTTATGCAGACATCCAACCACTAGATCAGGAATTGCTAAA 60 consensus_6138#2 ------------------------------------------------------------ consensus_6138#0 GAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGAGTCAGG 94 consensus_6138#1 GAAATACATCATTTATACAAAAGACCGTATTCATCCTAAGCTAAACCAAATGGA-TCAGG 119 consensus_6138#2 --------------------------------------------------TATTATCATT 10 * *** consensus_6138#0 ACAA-GGTTGCTGCAGC-----TTACGCTGATCTAAGACGGGAATCCATGATAACTGGGA 148 consensus_6138#1 ACAA-GGTTGCTGCAGC-----TTACGCTGATCTAAGACGGGAATCCATGATAACTGGGA 173 consensus_6138#2 ATTATGGTTGCTAAAGTATTAGTTACACTTGTTTCATACAT--ACCCACATTTAGTT--A 66 * * ******* ** **** ** * * * ** * *** * * * * consensus_6138#0 GCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTC 208 consensus_6138#1 GCTTACCAATAACTGTCCGACACATTGAATCGGTAATCCGTTTGTCAGAAGCACACGCTC 233 consensus_6138#2 CTTTATTGAT--TTTTTCAGGACAATAAATTGGTACTAAACTAGATTCTCACTTTATACA 124 *** ** * * * *** * *** **** * * * * consensus_6138#0 GTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTT---AATATGGCTCTCCGTGTCA 265 consensus_6138#1 GTTTGCATTTACGGGAATTTGTGAATGAGGATGATGTT---AATATGGCTCTCCGTGTCA 290 consensus_6138#2 GCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAATTATTGACC 184 * * * *** * * ** *** ** ** * * **** * ** * consensus_6138#0 TGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTT 325 consensus_6138#1 TGCTGGAGTCATTCGTGTCTACTCAAAAATTCAGTGTCATGAAGTCAATGCGACAGACTT 350 consensus_6138#2 TGTTATACTTATT--TAAATATTATATACTTCTATTTTATCAGAT--GTTTCATCCATGG 240 ** * * * *** * ** * * * *** * * ** * * * * * consensus_6138#0 TCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAAC 385 consensus_6138#1 TCTCGCGATTTTTGAGCTATCGTCGCGACAACCAAGAATTGTTATTGTTCTTGCTTAAAC 410 consensus_6138#2 TCCTATGATTGTTGTAAAAT-ACTATGATTTGTACGTCCCATCGTTTTTTTATGCTAATC 299 ** **** *** ** ** * * * ** ** * *** * consensus_6138#0 AGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGGAGTCAAGAGTGGC 445 consensus_6138#1 AGTTAGTCCAAGACCGATTAGCTTTCGAACGTGTTCGATATGCTGGG------------- 457 consensus_6138#2 AAATAAATTT-------------------------------------------------- 309 * ** consensus_6138#0 GCATCGAAGTTACTGAACGCGAATTTGCTGAACGAGCCAAGCAGATCAACATCAGTTCTG 505 consensus_6138#1 ------------------------------------------------------------ consensus_6138#2 ------------------------------------------------------------ consensus_6138#0 TTCGTGCATTCTTACAAAGTGACCTTTTCAAGTCACATCATTTTGTGTATGATGCCAGTC 565 consensus_6138#1 ------------------------------------------------------------ consensus_6138#2 ------------------------------------------------------------ consensus_6138#0 GAAAAGTTATCGTTCATACGGTATAAATGACAATAAATTGGTACTAAACTAGATTCTCAC 625 consensus_6138#1 ------------------------------------------------------------ consensus_6138#2 ------------------------------------------------------------ consensus_6138#0 TTTATACAGCTGACGTTTCTGTGCATCTGTATATCCTTATTTTTTCTAAAATACATTAAT 685 consensus_6138#1 ------------------------------------------------------------ consensus_6138#2 ------------------------------------------------------------ consensus_6138#0 TATTGACCTGTTATACTTATTAAATATTATATACTTCTATTTTATCAGATGTTTCATCCA 745 consensus_6138#1 ------------------------------------------------------------ consensus_6138#2 ------------------------------------------------------------ consensus_6138#0 TGGTCCTATGATTGTTGTAAAATACTATGATTTGTACGTCTCATCGTTTTTTTTATGCTA 805 consensus_6138#1 ------------------------------------------------------------ consensus_6138#2 ------------------------------------------------------------ consensus_6138#0 ATCAAATAAATTTTTGACCATTAATAAAAAAAAAAAAAAAAAAAA 850 consensus_6138#1 --------------------------------------------- consensus_6138#2 --------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||