cluster # 6139

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Schistosoma mansoni
cluster # 6139 cluster # 6139 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6139#0 length = 517 sequences # 3

consensus_6139#1 length = 241 sequences # 1

consensusID : consensus_6139#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 517
fasta sequence

                              [CAAATAATGAGGAACTATACCTTTAGCGCTGAAAACAATTTCCAATGCGTATTCCTCATTACTTAATTGTCGGTGGTGGTTTATCCGGTTTAGTTACTTCTTACCTCATCTCATTAACTCGACCATTGGGAAGTTACCGTTTAACAGTTTTGGAGAGTAGCAGTAGGTGGGGTGGTTGGATTCAGTCGGTTAAAAATATGGATACTGGATCAATCTATGAAATCGGTCCACATAGCGCTCGTGCAAAATCTGCCACATCAGGTCTTTTGATGAGAATAGTAAAAAGTTTGCATCTTGAAAGCTCACTTGTTTGGATGAGGCAGGGTACAGATGGAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCGGTTATTTTCTCGACGCCCACCGTCTCAGTCAGACTGGACTGTTGATGAATTCCTTCGCTCTCGTTTTGATTCCGA]

[+] EMBL CD098378             [CAAATAATGAGGAACTATACCTTTAGCGCTGAAAACAATTTCCAATGCGTATTCCTCATTACTTAATTGTCGGTGGTGGTTTATCCGGTTTAGTTACTTCTTACCTCATCTCATTAACTCGACCATTGGGAAGTTACCGTTTAACAGTTTTGGAGAGTAGCAGTAGGTGGGGTGGTTGGATTCAGTCGGTTAAAAATATGGATACTGGATCAATCTATGAAATCGGTCCACATAGCGCTCGTGCAAAATCTGCCACATCAGGTCTTTTGATGAGAATAGTAAAAAGTTTGCATCTTGAAAGCTCACTTGTTTGGATGAGGCAGGGTACAGATGGAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCGGTTATTTTCTCGACGCCCACCGTCTCAGTCAGACTGGACTGTTGATGAATTCCTTCGCTCTCGTTTTGATTCCGA]
[-] EMBL CD131943             [                                                                                                                                                                 AGTAGGTGGGGTGGTTGGATTCAGTCGGTTAAAAATATGGATCCTGGATCACTCTATGAAATCGGTCCACATAGCGCTCGTGCAAAATGTGCCACATCAGGTCTTTTGATGAGAATAGTAAAAAGTTTGCATCTTGAAAGCTCACTTGTTTGGATGAGGCAGGGTACAGATGGATCGAAGCAATTAATGTATATAAATGACCATCTGTTGCCAATGTCTGCGTTAAATTTCCCCACTTTAAGACCAT                                                                                                             ]
[-] EMBL BG932512             [                                                                                                                                                                                                                                                                                                                                 AGGGTACAGATGGAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCGGTTATTTTCTCGACGCCCACCGTCTCAGTCAGACTGG                                      ]




>consensus_6139#0
CAAATAATGAGGAACTATACCTTTAGCGCTGAAAACAATTTCCAATGCGTATTCCTCATT
ACTTAATTGTCGGTGGTGGTTTATCCGGTTTAGTTACTTCTTACCTCATCTCATTAACTC
GACCATTGGGAAGTTACCGTTTAACAGTTTTGGAGAGTAGCAGTAGGTGGGGTGGTTGGA
TTCAGTCGGTTAAAAATATGGATACTGGATCAATCTATGAAATCGGTCCACATAGCGCTC
GTGCAAAATCTGCCACATCAGGTCTTTTGATGAGAATAGTAAAAAGTTTGCATCTTGAAA
GCTCACTTGTTTGGATGAGGCAGGGTACAGATGGAGCGAAGCAATTAATGTATATAAATG
ACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCA
CTTGTAGTTTAATCATCAGGCGGTTATTTTCTCGACGCCCACCGTCTCAGTCAGACTGGA
CTGTTGATGAATTCCTTCGCTCTCGTTTTGATTCCGA

consensusID : consensus_6139#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 241
fasta sequence

                              [GAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCTTCTGCGATAAACGATCAGAATTTATGGTGTAAGCCACGCGACATACTTGACCATCCTCTAAACGGAAGGCTATGTGTGAAGGACTAATTACACATTGTGCTATTGACTCCCGGGTTAATGGACGCAAAACAT]

[-] EMBL CD063622             [GAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCTTCTGCGATAAACGATCAGAATTTATGGTGTAAGCCACGCGACATACTTGACCATCCTCTAAACGGAAGGCTATGTGTGAAGGACTAATTACACATTGTGCTATTGACTCCCGGGTTAATGGACGCAAAACAT]




>consensus_6139#1
GAGCGAAGCAATTAATGTATATAAATGACCAACTGTTGCCAATGTCTGCCTTCAATTTCT
CCACTTTAAAACCATTCACTAGGTCCACTTGTAGTTTAATCATCAGGCTTCTGCGATAAA
CGATCAGAATTTATGGTGTAAGCCACGCGACATACTTGACCATCCTCTAAACGGAAGGCT
ATGTGTGAAGGACTAATTACACATTGTGCTATTGACTCCCGGGTTAATGGACGCAAAACA
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6139#0      CAAATAATGAGGAACTATACCTTTAGCGCTGAAAACAATTTCCAATGCGTATTCCTCATT 60
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      ACTTAATTGTCGGTGGTGGTTTATCCGGTTTAGTTACTTCTTACCTCATCTCATTAACTC 120
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      GACCATTGGGAAGTTACCGTTTAACAGTTTTGGAGAGTAGCAGTAGGTGGGGTGGTTGGA 180
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      TTCAGTCGGTTAAAAATATGGATACTGGATCAATCTATGAAATCGGTCCACATAGCGCTC 240
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      GTGCAAAATCTGCCACATCAGGTCTTTTGATGAGAATAGTAAAAAGTTTGCATCTTGAAA 300
consensus_6139#1      ------------------------------------------------------------
                                                                                  

consensus_6139#0      GCTCACTTGTTTGGATGAGGCAGGGTACAGATGGAGCGAAGCAATTAATGTATATAAATG 360
consensus_6139#1      ---------------------------------GAGCGAAGCAATTAATGTATATAAATG 27
                                                       ***************************

consensus_6139#0      ACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCA 420
consensus_6139#1      ACCAACTGTTGCCAATGTCTGCCTTCAATTTCTCCACTTTAAAACCATTCACTAGGTCCA 87
                      ************************************************************

consensus_6139#0      CTTGTAGTTTAATCATCAGGCGGTTATTTTC-----TCGACGCCCACCGTCTCAGTCAGA 475
consensus_6139#1      CTTGTAGTTTAATCATCAGGCTTCTGCGATAAACGATCAGAATTTATGGTGTAAGCCACG 147
                      *********************   *    *      **       *  ** * ** **  

consensus_6139#0      CTGGACTGTTGATGAATTCCTTCGCTCTCGTTTTGATTCCGA------------------ 517
consensus_6139#1      CGACATACTTGACCATCCTCTAAACGGAAGGCTATGTGTGAAGGACTAATTACACATTGT 207
                      *   *   ****  *    **   *    *  *   *    *                  

consensus_6139#0      ----------------------------------
consensus_6139#1      GCTATTGACTCCCGGGTTAATGGACGCAAAACAT 241