These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6146#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 911 fasta sequence [TATCCTTTATTGATGTTGCTGTGCATGTTCAATTAATGTTATCTTTATATTCTAACGACAAATTATCTACATTATCATCAGTACCTGATGAAGTCTCAACAGATACTACTAATTATACTGCTAAAAATAATATCAATCAGCTTTCATCATTACAACATAGTAGTTGTGACAAAGAAAATCGATTGTACTCATCCCGTATACAATTTGCTGATCATTCAAATAGTTTTTTGTCGCGCCGAGAAAATCGTACGTCTGAAAAATCATCACTTATATTTGATGAGATTCATAGTGTTTCTGCACAGCCTTCTACTCCCTCTGTATTGTCATCTAATCAGAATTATTTTGAGCATGAAAACCATGAATTGAGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTGTTTCATCTGAAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTATCTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGTAAACCAATCTCCTGAGTTATCAATTAATGATCACCATCAGTTGAAGAATACAAATGATCATGACGGAAGCAACGATAATAATAATGGATGGAATAATACTGAAAATAAAGCAAATTCATCAGTTCATTCAAATTGTCTTTTGCCTAATACATGTCTTTCTTACTCATGTTCCTTAACTAACAATGATAATAGTGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAAGGTTCTATANCACTTTTC] [-] EMBL CD167855 [TATCCTTTATTGATGTTGCTGTGCATGTTCAATTAATGTTATCTTTATATTCTAACGACAAATTATCTACATTATCATCAGTACCTGATGAAGTCTCAACAGATACTACTAATTATACTGCTAAAAATAATATCAATCAGCTTTCATCATTACAACATAGTAGTTGTGACAAAGAAAATCGATTGTACTCATCCCGTATACAATTTGCTGATCATTCAAATAGTTTTTTGTCGCGCCGAGAAAATCGTACGTCTGAAAAATCATCACTTATATTTGATGAGATTCATAGTGTTTCTGCACAGCCTTCTACTCCCTCTGTATTGTCATCTAATCAGAATTATTTTGAGCATGAAAACCATGAATTGAGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTGTTTCATCTGTAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTATCTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGT ] [+] EMBL CD116697 [ TAGTGTTTCTGCACAGCCTTCTACTCCCTCTGTATTGTCATCTAATCAGAATTATTTTGAGCATGAAAACCATGAATTGAGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTGTTTCATCTGAAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTATCTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGTAAACCAATCTCCTGAGTTATCAATTAATGATCACCATCAGTTGAAGAATACAAATGATCATGACGGAAGCAACGATAATAATAATGGATGGAATAATACTGAAAATAAAGCAAATTCATCAGTTCATTCAAATTGTCTTTTGCCTAATACATGTCTTTCTTACTCATGTTCCTTAACTAACAATGATAATAGTGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAAGGTTCTATANCACTTTT ] [-] EMBL CD117440 [ AGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTGTTTCATCTGAAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTATCTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGTAAACCAATCTCCTGAGTTATCAATTAATGATCACCATCAGTTGAAGAATACAAATGATCATGACGGAAGCAACGATAATAATAATGGATGGAATAATACTGAAAATAAAGCAAATTCATCAGTTCATTCAAATTGTCTTTTGCCTAATACATGTCTTTCTTACTCATGTTCCTTAACTAACAATGATAATAGTGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAGCTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATCACACAAAAAAATTTCAAAGGTTCTATACAACTTTTC] consensusID : consensus_6146#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [TTGCTTACTCATTATTTTTAGTTTTATTGACGAGGTATTTGGCTGCTACAATACTATCGTTGACATGAAATTTTCATCAATGCATTATTTACTTTTTATTGTTCTTTTTTTGTCATACTTTGTCGATAAATGTGAAATTGATTCACAGCATTAACCGTAAATGTTTACATGTATGTTTTTTAAAACAAAATGATTTGGTGTAGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAAGGTTCTATACAACTTTTCAATGCGTGTACCTATACAATAATCGCTGATTTACTTGGCTCCTATCCTTTTTCACGTTCAATACGAACTAAAATACAATCTGTCTTTCTTTACTTTGAATTAGAT] [+] EMBL CD116803 [TTGCTTACTCATTATTTTTAGTTTTATTGACGAGGTATTTGGCTGCTACAATACTATCGTTGACATGAAATTTTCATCAATGCATTATTTACTTTTTATTGTTCTTTTTTTGTCATACTTTGTCGATAAATGTGAAATTGATTCACAGCATTAACCGTAAATGTTTACATGTATGTTTTTTAAAACAAAATGATTTGGTGTAGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAAGGTTCTATACAACTTTTCAATGCGTGTACCTATACAATAATCGCTGATTTACTTGGCTCCTATCCTTTTTCACGTTCAATACGAACTAAAATACAATCTGTCTTTCTTTACTTTGAATTAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6146#0 TATCCTTTATTGATGTTGCTGTGCATGTTCAATTAATGTTATCTTTATATTCTAACGACA 60 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 AATTATCTACATTATCATCAGTACCTGATGAAGTCTCAACAGATACTACTAATTATACTG 120 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 CTAAAAATAATATCAATCAGCTTTCATCATTACAACATAGTAGTTGTGACAAAGAAAATC 180 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 GATTGTACTCATCCCGTATACAATTTGCTGATCATTCAAATAGTTTTTTGTCGCGCCGAG 240 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 AAAATCGTACGTCTGAAAAATCATCACTTATATTTGATGAGATTCATAGTGTTTCTGCAC 300 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 AGCCTTCTACTCCCTCTGTATTGTCATCTAATCAGAATTATTTTGAGCATGAAAACCATG 360 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 AATTGAGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTG 420 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 TTTCATCTGAAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTAT 480 consensus_6146#1 ------------------------------------------------------------ consensus_6146#0 CTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGTAAACCAATCTCCTG 540 consensus_6146#1 ---------------------------------------TTGCT--TACTCATTATTTTT 19 *** * * ** * * * consensus_6146#0 AGTTATCAATTAATGATCACCATCAGTTGAAGAATACAAATGATCATGACGGAAGCAACG 600 consensus_6146#1 AGTTTT--ATTGACGAGGTATTTGGCTGCTACAATACTATCGTTGAC-ATGAAATTTTCA 76 **** * *** * ** * * * ***** * * * * * * ** * consensus_6146#0 ATAATA-ATAATGGATGGAATAATACTGAAAATAAAGCAAA-TTCATCAGTTCAT-TCAA 657 consensus_6146#1 TCAATGCATTATTTACTTTTTATTGTTCTTTTTTTGTCATACTTTGTCGATAAATGTGAA 136 *** ** ** * ** * * * ** * ** ** * ** * ** consensus_6146#0 ATTGTCTTTT-GCCTAATACATGTCTTTCT-TACTCATGTTCCTTAACTAACAATGAT-- 713 consensus_6146#1 ATTGATTCACAGCATTAACCGTAAATGTTTACATGTATGTTTTTTAAAACAAAATGATTT 196 **** * ** * * * * * * * * ***** **** * ****** consensus_6146#0 AATAGTGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTA 773 consensus_6146#1 GGTGTAGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTA 256 * ****************************************************** consensus_6146#0 TTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAAT 833 consensus_6146#1 TTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAAT 316 ************************************************************ consensus_6146#0 AACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAA 893 consensus_6146#1 AACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAA 376 ************************************************************ consensus_6146#0 GGTTCTATANCACTTTTC------------------------------------------ 911 consensus_6146#1 GGTTCTATACAACTTTTCAATGCGTGTACCTATACAATAATCGCTGATTTACTTGGCTCC 436 ********* ******* consensus_6146#0 ------------------------------------------------------------ consensus_6146#1 TATCCTTTTTCACGTTCAATACGAACTAAAATACAATCTGTCTTTCTTTACTTTGAATTA 496 consensus_6146#0 --- consensus_6146#1 GAT 499 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||