cluster # 6146

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Schistosoma mansoni
cluster # 6146 cluster # 6146 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6146#0 length = 911 sequences # 3

consensus_6146#1 length = 499 sequences # 1

consensusID : consensus_6146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 911
fasta sequence

                              [TATCCTTTATTGATGTTGCTGTGCATGTTCAATTAATGTTATCTTTATATTCTAACGACAAATTATCTACATTATCATCAGTACCTGATGAAGTCTCAACAGATACTACTAATTATACTGCTAAAAATAATATCAATCAGCTTTCATCATTACAACATAGTAGTTGTGACAAAGAAAATCGATTGTACTCATCCCGTATACAATTTGCTGATCATTCAAATAGTTTTTTGTCGCGCCGAGAAAATCGTACGTCTGAAAAATCATCACTTATATTTGATGAGATTCATAGTGTTTCTGCACAGCCTTCTACTCCCTCTGTATTGTCATCTAATCAGAATTATTTTGAGCATGAAAACCATGAATTGAGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTGTTTCATCTGAAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTATCTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGTAAACCAATCTCCTGAGTTATCAATTAATGATCACCATCAGTTGAAGAATACAAATGATCATGACGGAAGCAACGATAATAATAATGGATGGAATAATACTGAAAATAAAGCAAATTCATCAGTTCATTCAAATTGTCTTTTGCCTAATACATGTCTTTCTTACTCATGTTCCTTAACTAACAATGATAATAGTGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAAGGTTCTATANCACTTTTC]

[-] EMBL CD167855             [TATCCTTTATTGATGTTGCTGTGCATGTTCAATTAATGTTATCTTTATATTCTAACGACAAATTATCTACATTATCATCAGTACCTGATGAAGTCTCAACAGATACTACTAATTATACTGCTAAAAATAATATCAATCAGCTTTCATCATTACAACATAGTAGTTGTGACAAAGAAAATCGATTGTACTCATCCCGTATACAATTTGCTGATCATTCAAATAGTTTTTTGTCGCGCCGAGAAAATCGTACGTCTGAAAAATCATCACTTATATTTGATGAGATTCATAGTGTTTCTGCACAGCCTTCTACTCCCTCTGTATTGTCATCTAATCAGAATTATTTTGAGCATGAAAACCATGAATTGAGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTGTTTCATCTGTAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTATCTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGT                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD116697             [                                                                                                                                                                                                                                                                                              TAGTGTTTCTGCACAGCCTTCTACTCCCTCTGTATTGTCATCTAATCAGAATTATTTTGAGCATGAAAACCATGAATTGAGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTGTTTCATCTGAAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTATCTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGTAAACCAATCTCCTGAGTTATCAATTAATGATCACCATCAGTTGAAGAATACAAATGATCATGACGGAAGCAACGATAATAATAATGGATGGAATAATACTGAAAATAAAGCAAATTCATCAGTTCATTCAAATTGTCTTTTGCCTAATACATGTCTTTCTTACTCATGTTCCTTAACTAACAATGATAATAGTGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAAGGTTCTATANCACTTTT ]
[-] EMBL CD117440             [                                                                                                                                                                                                                                                                                                                                                                             AGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTGTTTCATCTGAAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTATCTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGTAAACCAATCTCCTGAGTTATCAATTAATGATCACCATCAGTTGAAGAATACAAATGATCATGACGGAAGCAACGATAATAATAATGGATGGAATAATACTGAAAATAAAGCAAATTCATCAGTTCATTCAAATTGTCTTTTGCCTAATACATGTCTTTCTTACTCATGTTCCTTAACTAACAATGATAATAGTGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAGCTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATCACACAAAAAAATTTCAAAGGTTCTATACAACTTTTC]




>consensus_6146#0
TATCCTTTATTGATGTTGCTGTGCATGTTCAATTAATGTTATCTTTATATTCTAACGACA
AATTATCTACATTATCATCAGTACCTGATGAAGTCTCAACAGATACTACTAATTATACTG
CTAAAAATAATATCAATCAGCTTTCATCATTACAACATAGTAGTTGTGACAAAGAAAATC
GATTGTACTCATCCCGTATACAATTTGCTGATCATTCAAATAGTTTTTTGTCGCGCCGAG
AAAATCGTACGTCTGAAAAATCATCACTTATATTTGATGAGATTCATAGTGTTTCTGCAC
AGCCTTCTACTCCCTCTGTATTGTCATCTAATCAGAATTATTTTGAGCATGAAAACCATG
AATTGAGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTG
TTTCATCTGAAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTAT
CTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGTAAACCAATCTCCTG
AGTTATCAATTAATGATCACCATCAGTTGAAGAATACAAATGATCATGACGGAAGCAACG
ATAATAATAATGGATGGAATAATACTGAAAATAAAGCAAATTCATCAGTTCATTCAAATT
GTCTTTTGCCTAATACATGTCTTTCTTACTCATGTTCCTTAACTAACAATGATAATAGTG
ACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTATTAGATT
CTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTA
ATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAAGGTTCTA
TANCACTTTTC

consensusID : consensus_6146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 499
fasta sequence

                              [TTGCTTACTCATTATTTTTAGTTTTATTGACGAGGTATTTGGCTGCTACAATACTATCGTTGACATGAAATTTTCATCAATGCATTATTTACTTTTTATTGTTCTTTTTTTGTCATACTTTGTCGATAAATGTGAAATTGATTCACAGCATTAACCGTAAATGTTTACATGTATGTTTTTTAAAACAAAATGATTTGGTGTAGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAAGGTTCTATACAACTTTTCAATGCGTGTACCTATACAATAATCGCTGATTTACTTGGCTCCTATCCTTTTTCACGTTCAATACGAACTAAAATACAATCTGTCTTTCTTTACTTTGAATTAGAT]

[+] EMBL CD116803             [TTGCTTACTCATTATTTTTAGTTTTATTGACGAGGTATTTGGCTGCTACAATACTATCGTTGACATGAAATTTTCATCAATGCATTATTTACTTTTTATTGTTCTTTTTTTGTCATACTTTGTCGATAAATGTGAAATTGATTCACAGCATTAACCGTAAATGTTTACATGTATGTTTTTTAAAACAAAATGATTTGGTGTAGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAAGGTTCTATACAACTTTTCAATGCGTGTACCTATACAATAATCGCTGATTTACTTGGCTCCTATCCTTTTTCACGTTCAATACGAACTAAAATACAATCTGTCTTTCTTTACTTTGAATTAGAT]




>consensus_6146#1
TTGCTTACTCATTATTTTTAGTTTTATTGACGAGGTATTTGGCTGCTACAATACTATCGT
TGACATGAAATTTTCATCAATGCATTATTTACTTTTTATTGTTCTTTTTTTGTCATACTT
TGTCGATAAATGTGAAATTGATTCACAGCATTAACCGTAAATGTTTACATGTATGTTTTT
TAAAACAAAATGATTTGGTGTAGACTCGCAATGTGACCAAGAGATGACTGAACAAGATAT
GTGGTGTAATCAACTATTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTC
ATCATCTCATGATAATAACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTAC
ACAAAAAAATTTCAAAGGTTCTATACAACTTTTCAATGCGTGTACCTATACAATAATCGC
TGATTTACTTGGCTCCTATCCTTTTTCACGTTCAATACGAACTAAAATACAATCTGTCTT
TCTTTACTTTGAATTAGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6146#0      TATCCTTTATTGATGTTGCTGTGCATGTTCAATTAATGTTATCTTTATATTCTAACGACA 60
consensus_6146#1      ------------------------------------------------------------
                                                                                  

consensus_6146#0      AATTATCTACATTATCATCAGTACCTGATGAAGTCTCAACAGATACTACTAATTATACTG 120
consensus_6146#1      ------------------------------------------------------------
                                                                                  

consensus_6146#0      CTAAAAATAATATCAATCAGCTTTCATCATTACAACATAGTAGTTGTGACAAAGAAAATC 180
consensus_6146#1      ------------------------------------------------------------
                                                                                  

consensus_6146#0      GATTGTACTCATCCCGTATACAATTTGCTGATCATTCAAATAGTTTTTTGTCGCGCCGAG 240
consensus_6146#1      ------------------------------------------------------------
                                                                                  

consensus_6146#0      AAAATCGTACGTCTGAAAAATCATCACTTATATTTGATGAGATTCATAGTGTTTCTGCAC 300
consensus_6146#1      ------------------------------------------------------------
                                                                                  

consensus_6146#0      AGCCTTCTACTCCCTCTGTATTGTCATCTAATCAGAATTATTTTGAGCATGAAAACCATG 360
consensus_6146#1      ------------------------------------------------------------
                                                                                  

consensus_6146#0      AATTGAGTATTTCAGCAAGTCATTCAGTTGAAAAATTGGGGGAAGTTGACAATTGGCTTG 420
consensus_6146#1      ------------------------------------------------------------
                                                                                  

consensus_6146#0      TTTCATCTGAAGTGAATGAAACAAATCTGACTAAAAATGATAATGTTTCGCACAGATTAT 480
consensus_6146#1      ------------------------------------------------------------
                                                                                  

consensus_6146#0      CTGTTGCTAAAATGTCATCTGAAGAGTATATAATCCCAATTGATGTAAACCAATCTCCTG 540
consensus_6146#1      ---------------------------------------TTGCT--TACTCATTATTTTT 19
                                                             *** *   *  ** * *  * 

consensus_6146#0      AGTTATCAATTAATGATCACCATCAGTTGAAGAATACAAATGATCATGACGGAAGCAACG 600
consensus_6146#1      AGTTTT--ATTGACGAGGTATTTGGCTGCTACAATACTATCGTTGAC-ATGAAATTTTCA 76
                      **** *  *** * **      *   *   * ***** *  * * *  * * **    * 

consensus_6146#0      ATAATA-ATAATGGATGGAATAATACTGAAAATAAAGCAAA-TTCATCAGTTCAT-TCAA 657
consensus_6146#1      TCAATGCATTATTTACTTTTTATTGTTCTTTTTTTGTCATACTTTGTCGATAAATGTGAA 136
                        ***  ** **  *     ** *  *     *    ** * **  **  *  ** * **

consensus_6146#0      ATTGTCTTTT-GCCTAATACATGTCTTTCT-TACTCATGTTCCTTAACTAACAATGAT-- 713
consensus_6146#1      ATTGATTCACAGCATTAACCGTAAATGTTTACATGTATGTTTTTTAAAACAAAATGATTT 196
                      ****  *    ** * *  * *   * * *  *   *****  ****   * ******  

consensus_6146#0      AATAGTGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTA 773
consensus_6146#1      GGTGTAGACTCGCAATGTGACCAAGAGATGACTGAACAAGATATGTGGTGTAATCAACTA 256
                        *   ******************************************************

consensus_6146#0      TTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAAT 833
consensus_6146#1      TTAGATTCTATATCGAATTTGTCATCGAACGTATTCTCTTGTTCATCATCTCATGATAAT 316
                      ************************************************************

consensus_6146#0      AACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAA 893
consensus_6146#1      AACAGTAATACATTAGATGAAATTATTCATAAAGCTCTAATTACACAAAAAAATTTCAAA 376
                      ************************************************************

consensus_6146#0      GGTTCTATANCACTTTTC------------------------------------------ 911
consensus_6146#1      GGTTCTATACAACTTTTCAATGCGTGTACCTATACAATAATCGCTGATTTACTTGGCTCC 436
                      *********  *******                                          

consensus_6146#0      ------------------------------------------------------------
consensus_6146#1      TATCCTTTTTCACGTTCAATACGAACTAAAATACAATCTGTCTTTCTTTACTTTGAATTA 496
                                                                                  

consensus_6146#0      ---
consensus_6146#1      GAT 499