These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6162#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 382 fasta sequence [CAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCC-GATTCAACCTGTTCTACC-ACTTCACTTTCTGCGTCCGCTTCA-A-C-TTGCCCCAA-TGTCTC-ACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCTTCAAATACGCCTTTCACCAAGATTCACCATATCCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATT] [+] EMBL CD200456 [CAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCC GATTCAACCTGTTCTACC ACTTCACTTTCTGCGTCCGCTTCA A C TTGCCCCAA TGTCTC ACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCTTCAAATACGCCTTTCACCAAGATTCACCATATCCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATT] [+] EMBL CD200459 [CAATCGTTCCCGTTCCGGTTGTGCTGCATTCTCTGCAAGCGCCTCACACTCCTATTCGACTGGATCGAACACAGACACTCGTTCCGGATTCAACCTGTTCTACCTACTTCACTTTCTGCGTCCGTTTCATAGCTTTGCCCCAATTGTCTCTACCGAACACTTCGAGTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCTTCAAATACGCC TTCACCAAc ] consensusID : consensus_6162#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence [CCTGATTGAAAATGTGGTTTCGGCACATCCACCTTAGCACCCACATCCACATCCGGCATCTCACCATACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACC] [+] EMBL CD067936 [CCTGATTGAAAATGTGGTTTCGGCACATCCACCTTAGCACCCACATCCACATCCGGCATCTCACCATACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCATCTCACCGACACGCTCAACC] consensusID : consensus_6162#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence [ACCCCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCAACCACTTCACTTTCTGCGTCCGCTTCAACTGCCCGCGGGGATCCTTCTAG] [-] EMBL CD059842 [ACCCCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCAACCACTTCACTTTCTGCGTCCGCTTCAACTGCCCGCGGGGATCCTTCTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6162#1 CCTGATTGAAAATGTGGTTTCGGCACATCCACCTTAGCACCCACATCCACATCCGGCATC 60 consensus_6162#2 ------------------------------------------------------------ consensus_6162#0 ------------------------------------------------------------ consensus_6162#1 TCACCATACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCT 120 consensus_6162#2 -------AC-CCCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCT 52 consensus_6162#0 ----------------CAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCT 44 ******************************************** consensus_6162#1 CAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCA 180 consensus_6162#2 CAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCAACCA 112 consensus_6162#0 CAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCA 104 ******************************************************* **** consensus_6162#1 CTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCG 240 consensus_6162#2 CTTCACTTTCTGCGTCCGCTTCAACTGCCCGCGGGGATCCTTCTAG-------------- 158 consensus_6162#0 CTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCG 164 ************************** ** * * * * * consensus_6162#1 ACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCA 300 consensus_6162#2 ------------------------------------------------------------ consensus_6162#0 ACTCGGCTTCCGTCTCACCTTCAAATACGCCTTCACCAACTTCACCATATTCCGCCTCCA 224 consensus_6162#1 TCTCACCGACACGCTCAACC---------------------------------------- 320 consensus_6162#2 ------------------------------------------------------------ consensus_6162#0 TCTCACCTTCAAATACGCCTTTCACCAAGATTCACCATATCCCGCCTCCATCTCACCGAC 284 consensus_6162#1 ------------------------------------------------------------ consensus_6162#2 ------------------------------------------------------------ consensus_6162#0 ACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTC 344 consensus_6162#1 -------------------------------------- consensus_6162#2 -------------------------------------- consensus_6162#0 CAATTCGACTGGAGCGAACACAGACACACGTTCCGATT 382 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||