cluster # 6184

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Schistosoma mansoni
cluster # 6184 cluster # 6184 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6184#0 length = 1060 sequences # 3

consensus_6184#1 length = 255 sequences # 1

consensusID : consensus_6184#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1060
fasta sequence

                              [CAACACAATAATGAGTAACTATCTTACTAACAGTCAGAAAACAGATTGTAAGCCACCACCACCATACTACTATTGTTACTATTCTCCATATAATACTACCAGTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACGGTCACTACGACCACCACATTGTTGGACGCTTCTAAAGATTTATCCAATGGTGGATATACTACTACATCTTTAAGGAATTATTCTAGGACGGATGATATCGGTGTATACAATTGCTCGGATGTTCTAAGTACTACTACTACTACTACCGATAATAATAGTAATATTGATAAGATTAATACCATACTAAGTCGTGGTAGTACTGGATGTCCACCGACAATTTGCCTACCCTATTCTATGAAGGGTAATTTCTCCACACTTACAGATCATAGATCTAATTTGATCACTAGTGAAGTATCACAATGTAAAAGAAAAAATCAAACATTATGTTTTAATGATATATTAAATGGAACAGAAAATCAAATACAGTATAAATATGATAGTACAGAATATTTAAAACCAAATCAACAGAGTCAAACAATAGTTAACGAAGAGCAATCAGCAGAATATCAAAAGTTATTATCTTCCGCTTCTAATATGAAATGATGATCATCAGCCTTCTCATTATTTGTATTGTAATTATAGTTAGATGTTTTTTAAAAGTATGTATAAACAAGCGTTTGTCTTCTGTCTTTTCTTCTTTCTTGTTGAATCCTTTTTCTGTACTATGTATGTGTGTATATGTTCAATGAACACCTTTTTTTCGGCTTTAAATTATAAATAATAGCGGGTAATTATTTCAATGCACTTTATGTATACATGTTTTTCTGTATTGTCCCTTTTGGTGTATTCTTCGTGGTTTTTCTTAATTTATATGCAACTTAAACTAAGTTTTCTTGTTACATTTTAAAGAACCGATGAAATGAAGTCTTTTCTATCTAGAAAAAAATGTATAAATTTGCTTTCCTTCCCCCTCTTATTCTTCACTCTCTTCCACCGGACACTATGAGACATGTAAATATTTAGCCTCAGATC]

[-] EMBL CD136851             [CAACACAATAATGAGTAACTATCTTACTAACAGTCAGAAAACAGATTGTAAGCCACCACCACCATACTACTATTGTTACTATTCTCCATATAATACTACCAGTACTACTACTACTACTACTACTACTACTACTACTACTACTACTACGGTCACTACGACCACCACATTGTTGGACGCTTCTAAAGATTTATCCAATGGTGGATATACTACTACATCTTTAAGGAATTATTCTAGGACGGATGATATCGGTGTATACAATTGCTCGGATGTTCTAAGTACTACTACTACTACTACCGATAATAATAGTAATATTGATAAGATTAATACCATACTAAGTCGTGGTAGTACTGGATGTCCACCGACAATTTGCCTACCCTATTCTATGAAGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD121973             [                                                                                                                                                                                                                                                                                                                                TTAATACCATACTAAGTCGTGGTAGTACTGGATGTCCACCGACAATTGGCCTACCCTATTCTATGAATATTAATTTCTCCACACTTACAGATCATAGATCTAATTTGATCACTAGTGAAGTATCACAATGTAAAAGAAAAAATCAAACATTATGTTTTAATGATATATTAAATGGAACAGAAAATCAAATACAGTATAAATATGATAGTACAGAATATTTAAAACCAAATCAACAGAGTCAAACAATAGTTAACGAAGAGCAATCAGCAGAATATCAAAAGTTATTATCTTCCGCTTCTAATATGAAATG                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD124763             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GTAAAAGAAAAAATCAAACATTATGTTTTAATGATATATTAAATGGAACAGAAAATCAAATACAGTATAAATATGATAGTACAGAATATTTAAAACCAAATCAACAGAGTCAAACAATAGTTAACGAAGAGCAATCAACAGAATATCAAAAGTTATTATCTTCCGCTTCTAATATGAAATGATGATCATCAGCCTTCTCATTATTTGTATTGTAATTATAGTTAGATGTTTTTTAAAAGTATGTATAAACAAGCGTTTGTCTTCTGTCTTTTCTTCTTTCTTGTTGAATCCTTTTTCTGTACTATGTATGTGTGTATATGTTCAATGAACACCTTTTTTTCGGCTTTAAATTATAAATAATAGCGGGTAATTATTTCAATGCACTTTATGTATACATGTTTTTCTGTATTGTCCCTTTTGGTGTATTCTTCGTGGTTTTTCTTAATTTATATGCAACTTAAACTAAGTTTTCTTGTTACATTTTAAAGAACCGATGAAATGAAGTCTTTTCTATCTAGAAAAAAATGTATAAATTTGCTTTCCTTCCCCCTCTTATTCTTCACTCTCTTCCACCGGACACTATGAGACATGTAAATATTTAGCCTCAGATC]




>consensus_6184#0
CAACACAATAATGAGTAACTATCTTACTAACAGTCAGAAAACAGATTGTAAGCCACCACC
ACCATACTACTATTGTTACTATTCTCCATATAATACTACCAGTACTACTACTACTACTAC
TACTACTACTACTACTACTACTACTACGGTCACTACGACCACCACATTGTTGGACGCTTC
TAAAGATTTATCCAATGGTGGATATACTACTACATCTTTAAGGAATTATTCTAGGACGGA
TGATATCGGTGTATACAATTGCTCGGATGTTCTAAGTACTACTACTACTACTACCGATAA
TAATAGTAATATTGATAAGATTAATACCATACTAAGTCGTGGTAGTACTGGATGTCCACC
GACAATTTGCCTACCCTATTCTATGAAGGGTAATTTCTCCACACTTACAGATCATAGATC
TAATTTGATCACTAGTGAAGTATCACAATGTAAAAGAAAAAATCAAACATTATGTTTTAA
TGATATATTAAATGGAACAGAAAATCAAATACAGTATAAATATGATAGTACAGAATATTT
AAAACCAAATCAACAGAGTCAAACAATAGTTAACGAAGAGCAATCAGCAGAATATCAAAA
GTTATTATCTTCCGCTTCTAATATGAAATGATGATCATCAGCCTTCTCATTATTTGTATT
GTAATTATAGTTAGATGTTTTTTAAAAGTATGTATAAACAAGCGTTTGTCTTCTGTCTTT
TCTTCTTTCTTGTTGAATCCTTTTTCTGTACTATGTATGTGTGTATATGTTCAATGAACA
CCTTTTTTTCGGCTTTAAATTATAAATAATAGCGGGTAATTATTTCAATGCACTTTATGT
ATACATGTTTTTCTGTATTGTCCCTTTTGGTGTATTCTTCGTGGTTTTTCTTAATTTATA
TGCAACTTAAACTAAGTTTTCTTGTTACATTTTAAAGAACCGATGAAATGAAGTCTTTTC
TATCTAGAAAAAAATGTATAAATTTGCTTTCCTTCCCCCTCTTATTCTTCACTCTCTTCC
ACCGGACACTATGAGACATGTAAATATTTAGCCTCAGATC

consensusID : consensus_6184#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [AGAAGCTGAATATCAAAAGTTATTATCTTCCGCTTCTAATATGAAATGATGATCATCAGCCTTCTCATTACTTGTATTGTAATTATAGTTAGATGTTTTTTAAAAGTATGTATAAACAAGCGTTTGTTTTCTGTCTTTTCTTCTTTCTTGTTGAATCCTTTTTCTGTACTATGTATGTGTGTATATGTTCAATGAACACCTTTTTTTCGGCTTTAAATTATAAATAATAGCGGGAAGACTGCAGGCATCAGCTTC]

[+] EMBL CD177806             [AGAAGCTGAATATCAAAAGTTATTATCTTCCGCTTCTAATATGAAATGATGATCATCAGCCTTCTCATTACTTGTATTGTAATTATAGTTAGATGTTTTTTAAAAGTATGTATAAACAAGCGTTTGTTTTCTGTCTTTTCTTCTTTCTTGTTGAATCCTTTTTCTGTACTATGTATGTGTGTATATGTTCAATGAACACCTTTTTTTCGGCTTTAAATTATAAATAATAGCGGGAAGACTGCAGGCATCAGCTTC]




>consensus_6184#1
AGAAGCTGAATATCAAAAGTTATTATCTTCCGCTTCTAATATGAAATGATGATCATCAGC
CTTCTCATTACTTGTATTGTAATTATAGTTAGATGTTTTTTAAAAGTATGTATAAACAAG
CGTTTGTTTTCTGTCTTTTCTTCTTTCTTGTTGAATCCTTTTTCTGTACTATGTATGTGT
GTATATGTTCAATGAACACCTTTTTTTCGGCTTTAAATTATAAATAATAGCGGGAAGACT
GCAGGCATCAGCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6184#0      CAACACAATAATGAGTAACTATCTTACTAACAGTCAGAAAACAGATTGTAAGCCACCACC 60
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      ACCATACTACTATTGTTACTATTCTCCATATAATACTACCAGTACTACTACTACTACTAC 120
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      TACTACTACTACTACTACTACTACTACGGTCACTACGACCACCACATTGTTGGACGCTTC 180
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      TAAAGATTTATCCAATGGTGGATATACTACTACATCTTTAAGGAATTATTCTAGGACGGA 240
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      TGATATCGGTGTATACAATTGCTCGGATGTTCTAAGTACTACTACTACTACTACCGATAA 300
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      TAATAGTAATATTGATAAGATTAATACCATACTAAGTCGTGGTAGTACTGGATGTCCACC 360
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      GACAATTTGCCTACCCTATTCTATGAAGGGTAATTTCTCCACACTTACAGATCATAGATC 420
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      TAATTTGATCACTAGTGAAGTATCACAATGTAAAAGAAAAAATCAAACATTATGTTTTAA 480
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      TGATATATTAAATGGAACAGAAAATCAAATACAGTATAAATATGATAGTACAGAATATTT 540
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      AAAACCAAATCAACAGAGTCAAACAATAGTTAACGAAGAGCAATCAGCAGAATATCAAAA 600
consensus_6184#1      ------------------------------------------AGAAGCTGAATATCAAAA 18
                                                                *  *** ***********

consensus_6184#0      GTTATTATCTTCCGCTTCTAATATGAAATGATGATCATCAGCCTTCTCATTATTTGTATT 660
consensus_6184#1      GTTATTATCTTCCGCTTCTAATATGAAATGATGATCATCAGCCTTCTCATTACTTGTATT 78
                      **************************************************** *******

consensus_6184#0      GTAATTATAGTTAGATGTTTTTTAAAAGTATGTATAAACAAGCGTTTGTCTTCTGTCTTT 720
consensus_6184#1      GTAATTATAGTTAGATGTTTTTTAAAAGTATGTATAAACAAGCGTTTGTTTTCTGTCTTT 138
                      ************************************************* **********

consensus_6184#0      TCTTCTTTCTTGTTGAATCCTTTTTCTGTACTATGTATGTGTGTATATGTTCAATGAACA 780
consensus_6184#1      TCTTCTTTCTTGTTGAATCCTTTTTCTGTACTATGTATGTGTGTATATGTTCAATGAACA 198
                      ************************************************************

consensus_6184#0      CCTTTTTTTCGGCTTTAAATTATAAATAATAGCGGGTA-ATTATTTCAATGCACTTTATG 839
consensus_6184#1      CCTTTTTTTCGGCTTTAAATTATAAATAATAGCGGGAAGACTGCAGGCATCAGCTTC--- 255
                      ************************************ * * *      **   ***    

consensus_6184#0      TATACATGTTTTTCTGTATTGTCCCTTTTGGTGTATTCTTCGTGGTTTTTCTTAATTTAT 899
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      ATGCAACTTAAACTAAGTTTTCTTGTTACATTTTAAAGAACCGATGAAATGAAGTCTTTT 959
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      CTATCTAGAAAAAAATGTATAAATTTGCTTTCCTTCCCCCTCTTATTCTTCACTCTCTTC 1019
consensus_6184#1      ------------------------------------------------------------
                                                                                  

consensus_6184#0      CACCGGACACTATGAGACATGTAAATATTTAGCCTCAGATC 1060
consensus_6184#1      -----------------------------------------