These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 499 fasta sequence [AATGAACATGTTTGTAATACTGGAGTCGCTATTGCTGAAGATTTTTCAAACACAGTTCCTTTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTTGTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAGCAGTCTTGTTTTTCTGGGCTTAGTCAATCTCCAAGTCAAACAAAACAAGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTTCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCAAGTTGCTCTTCCTTTTTAAACACTTGTCCTAGTATAATAAAACTTCTTATGTGGTTAAAGAAATGGAAATATAAAAATTTCT] [+] EMBL CD160004 [AATGAACATGTTTGTAATACTGGAGTCGCTATTGCTGAAGATTTTTCAAACACAGTTCCTTTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTTGTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAGCAGTCTTGTTTTTCTGGGCTTAGTCAATCTCCAAGTCAAACAAAACAAGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTTCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACCAGTACATGCCGTCNAGTTGCTCTTCCTTTTTAAACACTTGTCCTAGTATAATAAAACTTCTTATGTGGTT ] [-] EMBL CD160215 [ ATGAACATGTTTGTAATACTGGAGTCGCTATTGCTGAAGATTTTTCAAACACAGTTCCTTTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTTGTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAGCAGTCTTGTTTTTCTGGGCTTAGTCAATCTCCAAGTCAAACAAAACAAGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTTCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCAAGT ] [-] EMBL CD159987 [ TTTTCAAACACAGTTCCTTTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTTGTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAGCAGTCTTGTTTTTCTGGGCTTAGTCAATCTCCAAGTCAAACAAAACAAGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTTCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCAAGTTGCTCTTCCTTTTTAAACACTTGTCCTAGTATAATAAAACTTCTTATGTGGTTAAAGAAATGGAAATATAAAAATTTCT] consensusID : consensus_6187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [ACCCAATAGGCAGCAGTCGTGTTTTTCTGGGCTAACTCAATCTCCAAGTCAAACGGAACAAGTAACATGATACTAACAAATGAGTATTAGCATTATAGGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAGAAATTTCAGTCTTTGCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCTAAGTTGCTCTTCCTTATTTAAACAGCTTGTCTCTAGTAGTAATAAAACTTCTTACTAGTGGTATAAAGATAATGGATAATAGTACAAAATTCTAAAGTAGAAA] [-] EMBL CD121981 [ACCCAATAGGCAGCAGTCGTGTTTTTCTGGGCTAACTCAATCTCCAAGTCAAACGGAACAAGTAACATGATACTAACAAATGAGTATTAGCATTATAGGAAATGGCTGATATTTATCTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAACTTTCCTATCTTTGAATGTTTTCAGAAATTTCAGTCTTTGCACCACTGGCTGCACTAAGTCAAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTCTAAGTTGCTCTTCCTTATTTAAACAGCTTGTCTCTAGTAGTAATAAAACTTCTTACTAGTGGTATAAAGATAATGGATAATAGTACAAAATTCTAAAGTAGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6187#0 AATGAACATGTTTGTAATACTGGAGTCGCTATTGCTGAAGATTTTTCAAACACAGTTCCT 60 consensus_6187#1 ------------------------------------------------------------ consensus_6187#0 TTGTGTAATCCAAAAGTCGAGTTTTCATGTACTCGAAGTTCTGAAGATAGTTTAATTGTT 120 consensus_6187#1 ------------------------------------------------------------ consensus_6187#0 GTGCCTGATATAATAACAGAAGCATTAGTTTGCTCAGAACCCAATATGCAG--CAGTCTT 178 consensus_6187#1 --ACCCAATA-GGCAGCAGTCGTGTTTTTCTGGGCT-AACTCAATCTCCAAGTCAAACGG 56 ** *** * *** * ** * ** * *** **** * ** ** * consensus_6187#0 GTTTTTCTGGGCTTAGTCAATCTCCAAGT-CAAACAAAACAAGAAATGGCTGATATTTAT 237 consensus_6187#1 AACAAGTAACATGATACTAACAAATGAGTATTAGCATTATAGGAAATGGCTGATATTTAT 116 ** *** * ** * * ****************** consensus_6187#0 CTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAAC 297 consensus_6187#1 CTGTCGAAAACTATTGATTCTGATACATGTCTTAGGAAGATTGTGGATGATCATCCAAAC 176 ************************************************************ consensus_6187#0 TTTCCTATCTTTGAATGTTTTCAAAAATTTCAGTCTTT-CACCACTGGCTGCACTAAGTC 356 consensus_6187#1 TTTCCTATCTTTGAATGTTTTCAGAAATTTCAGTCTTTGCACCACTGGCTGCACTAAGTC 236 *********************** ************** ********************* consensus_6187#0 AAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTC 416 consensus_6187#1 AAGGCAAATTCCATCAGCTTCAAATGAGTCATTATTGTGGGTAGACAAGTACATGCCGTC 296 ************************************************************ consensus_6187#0 -AAGTTGCTCTTCCTT-TTTAAACA-CTTGTC-CTAGTA-TAATAAAACTTCTTAT--GT 469 consensus_6187#1 TAAGTTGCTCTTCCTTATTTAAACAGCTTGTCTCTAGTAGTAATAAAACTTCTTACTAGT 356 *************** ******** ****** ****** *************** ** consensus_6187#0 GGT-TAAAGA-AATGGA-AATA-TAAAAATTTCT---------- 499 consensus_6187#1 GGTATAAAGATAATGGATAATAGTACAAAATTCTAAAGTAGAAA 400 *** ****** ****** **** ** *** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||