cluster # 6195

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Schistosoma mansoni
cluster # 6195 cluster # 6195 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6195#0 length = 519 sequences # 2

consensus_6195#1 length = 468 sequences # 2

consensusID : consensus_6195#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 519
fasta sequence

                              [GTATTATTTTATTTGTAAGATTTGTTTGAATTTTCTTCTTGTTAGTGTTAAGGACTGAATTTTGATCAGTGAACGAAATAGCTCGATTCTACTATTGAGTCATAAGTATTTTAAATGAAGATGAAGAATGATAAGCAATAGAATCTATAACGAATATTTTATACCATTTGGGACCGATTGAAATTCACTTCTTGACATCAACAATAGAAAGATAATAAATAATTTCAATTTCGCCGTCATTCTTGTTTAGAACTGTTTATAGAATATTTGAGTACAAAGAAAGCAAAAGTAAACTAAATCCATTTATACTAATTGGTCAATAGAAAGTAATAAGTGTTGTTCGTTTTAGGTTTGATAGAATTCCAATAGTAAATTTCACATTGGGGTTACTAAGTTAAATGAATTGATAGGGTATTTGGATAATAATCAGTGTTTAATCAGAAGGGGATTTGTGGAGATTTCAGTATTTTTCACAGTTGAAATCATGAGTCAATTGAAGCTAGACCACGATCGANAACC]

[+] EMBL CD129886             [GTATTATTTTATTTGTAAGATTTGTTTGAATTTTCTTCTTGTTAGTGTTAAGGACTGAATTTTGATCAGTGAACGAAATAGCTCGATTCTACTATTGAGTCATAAGTATTTTAAATGAAGATGAAGAATGATAAGCAATAGAATCTATAACGAATATTTTATACCATTTGGGACCGATTGAAATTCACTTCTTGACATCAACAATAGAAAGATAATAAATAATTTCAATTTCGCCGTCATTCTTGTTTAGAACTGTTTATAGAATATTTGAGTACAAAGAAAGCAAAAGTAAACTAAATCCATTTATACTAATTGGTCAATAGAAAGTAATAAGTGTTGTTCGTTTTAGGTTTGATAGAATTCCAATAGTAAATTTCACATTGGGGTTACTAAGTTAAATGAATTGATAGGGTATTTGGATAATAATCAGTGTTTAATCAGAAGGGGATTTGTGGAGATTTCAGTATTTTTCACAGTTGAAATCATGAGTCAATTGAAGCTAGACCACGATCGANAACC]
[+] EMBL CD129875             [GTATTATTTTATTTGTAAGATTTGTTTGAATTTTCTTCTTGTTAGTGTTAAGGACTGAATTTTGATCAGTGAACGAAATAGCTCGATTCTACTATTGAGTCATAAGTATTTTAAATGAAGATGAAGAATGATAAGCAATAGAATCTATAACGAATATTTTATACCATTTGGGACCGATTGAAATTCACTTCTTGACATCAACAATAGAAAGATAATAAATAATTTCAATTTCGCCGTCATTCTTGTTTAGAACTGTTTATAGAATATTTGAGTACAAAGAAAGCAAAAGTAAACTAAATCCATTTATACTAATTGGTCAATAGAAAGTAATAAGTGTTGTTCGTTTTAGGTTTGATAGAATTCCAATAGTAAATTTCACATTGGGGTTACTAAGTTAAATGAATTGATAGGGTATTTGGATAATAATCAGTGTTTAATCAGAAGGGGATTTGTGGAGATTTCAGTATTTTTCAAAGCTGAAATCATGAGTCAA                          ]




>consensus_6195#0
GTATTATTTTATTTGTAAGATTTGTTTGAATTTTCTTCTTGTTAGTGTTAAGGACTGAAT
TTTGATCAGTGAACGAAATAGCTCGATTCTACTATTGAGTCATAAGTATTTTAAATGAAG
ATGAAGAATGATAAGCAATAGAATCTATAACGAATATTTTATACCATTTGGGACCGATTG
AAATTCACTTCTTGACATCAACAATAGAAAGATAATAAATAATTTCAATTTCGCCGTCAT
TCTTGTTTAGAACTGTTTATAGAATATTTGAGTACAAAGAAAGCAAAAGTAAACTAAATC
CATTTATACTAATTGGTCAATAGAAAGTAATAAGTGTTGTTCGTTTTAGGTTTGATAGAA
TTCCAATAGTAAATTTCACATTGGGGTTACTAAGTTAAATGAATTGATAGGGTATTTGGA
TAATAATCAGTGTTTAATCAGAAGGGGATTTGTGGAGATTTCAGTATTTTTCACAGTTGA
AATCATGAGTCAATTGAAGCTAGACCACGATCGANAACC

consensusID : consensus_6195#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 468
fasta sequence

                              [GAGATTTTATTATTTTTCATAGTTGAAATCATGAGTCAATTGAAGCTAGACCACCATTTTTGAAGTAATAGACCCATCCTTAGGCATTCATTGATAAAGAAATGTAGTATTCAATACGAGTAATAATAGAGATTAGAAAAACCAGAAAAGAAACGTATATTTATCACGTTTTCATTTAAATGTGACTAAATCATACATCATGCTAATCAAAGATAACTCTAACAAGTATTTGTTATCCTGCTACAAACTTGTTCTCACCACATATGACAGTTTTTTTTAATAACACGAACGGTGTAAAACGATCTCCGTCTGTTTATATCAATGCATATATACATTGTTTGATTAAACGATGGACATCTACAGGCTTTACTTCGATAGCCCAATGACTGAGAAAGAGTATCAAGTGAATTTAAGTAAGTGTATTTAAACTAACAAACAAAACAACCTAATTCTAGATTATTCAAATTT]

[+] EMBL CD069721             [GAGATTTTATTATTTTTCATAGTTGAAATCATGAGTCAATTGAAGCTAGACCACCATTTTTGAAGTAATAGACCCATCCTTAGGCATTCATTGATAAAGAAATGTAGTATTCAATACGAGTAATAATAGAGATTAGAAAAACCAGAAAAGAAACGTATATTTATCACGTTTTCATTTAAATGTGACTAAATCATACATCATGCTAATCAAAGATAACTCTAACAAGTATTTGTTATCCTGCTACAAACTTGTTCTCACCACATATGACAGTTTTTTTTAATAACACGAACGGTGTAAAACGATCTCCGTCTGTTTATATCAATGCATATATACATTGTTTGATTAAACGATGGACATCTACAGGCTTTACTTCGATAGCCCAATGACTGAGAAAGAGTATCAAGTGAATTTAAGTAAGTGTATTTAAACTAACAAACAAAACAACCTAATT                 ]
[+] EMBL CD069718             [ AGATTTTATTATTTTTCATAGTTGAAATCATGAGTCAATTGAAGCTAGACCACCATTTTTGAAGTAATAGACCCATCCTTAGGCATTCATTGATAAAGAAATGTAGTATTCAATACGAGTGATAATAGAGATTAGAAAAACCAGAAAAGAAACGTATATTTATCACGTTTTCATTTAAATGTGACTAAATCATACATCATGCTAATCAAAGATAACTCTAACAAGTATTTGTTTTCCCGCTACAAACTTGTTCTCACCACATATGACAGTTTTTTTTAATAACACGAACGGTGTAAAACGATCTCCGTCTGTTTATATCAATGCATATATACATTGTTTGATTAAACGATGGACATCTACAGGCTTTACTTCGATAGCCCAATGACTGAGAAAGAGTATAAAGTGAATTTAAGTAAGTGTATTTAAACTAACAAAGAAAACAAACTAATTCTAGATTATTCAAATTT]




>consensus_6195#1
GAGATTTTATTATTTTTCATAGTTGAAATCATGAGTCAATTGAAGCTAGACCACCATTTT
TGAAGTAATAGACCCATCCTTAGGCATTCATTGATAAAGAAATGTAGTATTCAATACGAG
TAATAATAGAGATTAGAAAAACCAGAAAAGAAACGTATATTTATCACGTTTTCATTTAAA
TGTGACTAAATCATACATCATGCTAATCAAAGATAACTCTAACAAGTATTTGTTATCCTG
CTACAAACTTGTTCTCACCACATATGACAGTTTTTTTTAATAACACGAACGGTGTAAAAC
GATCTCCGTCTGTTTATATCAATGCATATATACATTGTTTGATTAAACGATGGACATCTA
CAGGCTTTACTTCGATAGCCCAATGACTGAGAAAGAGTATCAAGTGAATTTAAGTAAGTG
TATTTAAACTAACAAACAAAACAACCTAATTCTAGATTATTCAAATTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6195#0      -GTATTATTTTATTTGTAAGATTTGTTTGAATTTTCTTCTTGTTAGTGTTAAGGACTGAA 59
consensus_6195#1      GAGATTTTATTATTTTTCATAGTTG---AAATCATGAGTCAATTGAAGCTAGACCACCAT 57
                         *** * ****** * * * ***    ***  *       **   * **       * 

consensus_6195#0      TTTTGAT-CAGTGAACGAAATAGCTCGATTCTACT-ATTGAGTCATA-AGTATTTTAAAT 116
consensus_6195#1      TTTTGAAGTAATAGACCCATCCTTAGGCATTCATTGATAAAGAAATGTAGTATTCAATAC 117
                      ******   * *  **  *       *  *  * * **  **  **  ******  * * 

consensus_6195#0      GAAGATGAAGAATGATAAGCAATA--GAATCTATAACGAATATTTTATAC-----CATTT 169
consensus_6195#1      GAGTAATAATAGAGATTAGAAAAACCAGAAAAGAAACGTATATTTATCACGTTTTCATTT 177
                      **  *  ** *  *** ** ** *    *     **** ******   **     *****

consensus_6195#0      GGGACCGATTGAAATTCACTTCTTGACATCAACAATAGAAAGATAATAAATAATTTCAAT 229
consensus_6195#1      AAATGTGACTAAATCATACATCATGCTAATCA-AAGATAACTCTAACAAGTATTTGTTAT 236
                            ** * **    ** ** **  *   * ** * **   *** ** ** **   **

consensus_6195#0      TTCGCCGTCATTCT-TGTTTAGAACTGTTTATAGAATATTTGAGTACAAAGAAAGCA--A 286
consensus_6195#1      CCTGCTACAAACTTGTTCTCACCACATATGACAGTTTTTTTTAATAACACGAACGGTGTA 296
                         **    *   * *  * *  **   * * **  * *** * **  * *** *    *

consensus_6195#0      AAGTAAACTAAATCCATTTATACTAATTGGTCAATAGAAAGT---AATAAGTGTTGTTCG 343
consensus_6195#1      AAACGATCTCCGTCTGTTTATATCAATGCATATATACATTGTTTGATTAAACGATGGACA 356
                      **   * **   **  ******  ***   *  *** *  **   * ***  * **  * 

consensus_6195#0      TTT-TAGGTTTGATAGAATTCCAATAGTA-AATTTCACATTGGGGTTACTAAGTTAAATG 401
consensus_6195#1      TCTACAGGCTTTAC-----TTCGATAGCCCAATGACTGAGAAAGAGTATCAAGTGAATTT 411
                      * *  *** ** *      * * ****   ***  *  *    *  **  **** ** * 

consensus_6195#0      AATTGATAGGGTATTTGGA-TAATAATCAGTGTTTAATCAGAAGGGGATTTGTGGAGATT 460
consensus_6195#1      AAGTAA--GTGTATTTAAACTAACAAACAAAAC--AACCTAATTCTAGATTATTCAAATT 467
                      ** * *  * ******  * *** ** **      ** *  *       ** *  * ***

consensus_6195#0      TCAGTATTTTTCACAGTTGAAATCATGAGTCAATTGAAGCTAGACCACGATCGANAACC 519
consensus_6195#1      T---------------------------------------------------------- 468
                      *