cluster # 6208

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Schistosoma mansoni
cluster # 6208 cluster # 6208 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6208#0 length = 534 sequences # 2

consensus_6208#1 length = 534 sequences # 2

consensusID : consensus_6208#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 534
fasta sequence

                              [CGAAATGCAACTATTCNTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTTGTTCTATGAGGAGACCGCTGATAAGATCATCTTCGTCTGAAGTTAATCGAATTAGTGCCACAGCAGCTTCATTATAGAGACCACGACTACATAATGCTTCAAAATTTAACAGAGTTGATCGCAAAGCAAGTTCTGGTGATAAATGTGATTGAAGGTAAGTAGCTACAGCTGAATCCATGAGATGATATGGGTATTGACGTTGGCTTGTCGCACCTTGAAGATAAACAGATAAGGCAGACATTTCCTGAGCTCCAGCATGGTGTAACCAAGCTGAATCATTTTGAAAATCACGTTTTAATACATTATACGTCTGATAGGCTACTTCATATTGCTGGAACAGAAATGCTAAATCAGCTAGACGACGCATTTGTGATTCAGGTGAATCTTGGCTATACACAATTGTGGAGTGATTGACTGGGCCTGCATATCAGAGAACTCATGAGTAGTCAATGTAGTGTTGGTAGATAAATTGTCC]

[-] EMBL CD115472             [CGAAATGCAACTATTCNTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTTGTTCTATGAGGAGACCGCTGATAAGATCATCTTCGTCTGAAGTTAATCGAATTAGTGCCACAGCAGCTTCATTATAGAGACCACGACTACATAATGCTTCAAAATTTAACAGAGTTGATCGCAAAGCAAGTTCTGGTGATAAATGTGATTGAAGGTAAGTAGCTACAGCTGAATCCATGAGATGATATGGGTATTGACGTTGGCTTGTCGCACCTTGAAGATAAACAGATAAGGCAGACATTTCCTGAGCTCCAGCATGGTGTAACCAAGCTGAATCATTTTGAAAATCACGTTTTAATACATTATACGTCTGATAGGCTACTTCATATTGCTGGAACAGAAATGCTAAATCAGCTAGACGACGCATTTGTGATTCAGGTGAATCTTGGCTATACACAATTGTGGAGTGATTGACTGGGCCTGCATATCAGAGAACTCATGAGT                               ]
[-] EMBL CD115499             [                          GACGTTTCAGTGATAGGACACAATGAGCTACTTGTTCTATGAGGAGACCGCTGATAAGATCATCTTCGTCTGAAGTTAATCGTATTAGTGCCACAGCAGCTTCATTATAGAGACCACGACTACATAATGCTTCAAAATTTAACAGAGTTGATCGCAAAGCAAGTTCTGGTGATAAATGTGATTGAAGGTAAGTAGCTACAGCTGAATCCATGAGATGATATGGGTATTGACGTTGGCTTGTCGCACCTTGAAGATAAACAGATAAGGCAGACATTTCCTGAGCTCCAGCATGGTGTAACCAAGCTGAATCATTTTGAAAATCACGTTTTAATACATTATACGTCTGATAGGCTACTTCATATTGCTGAAACAGAAATGCTAAATCAGCTAGACGACGCATTTGTGATTCAGGTGAATCTTGGCTATACACAATTGTGGAGTGATTGACTGGGCCTGCATATGA AATACT TTGAGGAGTCAATGTAGTGTTGGTAGATAAATTGTCC]




>consensus_6208#0
CGAAATGCAACTATTCNTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTTG
TTCTATGAGGAGACCGCTGATAAGATCATCTTCGTCTGAAGTTAATCGAATTAGTGCCAC
AGCAGCTTCATTATAGAGACCACGACTACATAATGCTTCAAAATTTAACAGAGTTGATCG
CAAAGCAAGTTCTGGTGATAAATGTGATTGAAGGTAAGTAGCTACAGCTGAATCCATGAG
ATGATATGGGTATTGACGTTGGCTTGTCGCACCTTGAAGATAAACAGATAAGGCAGACAT
TTCCTGAGCTCCAGCATGGTGTAACCAAGCTGAATCATTTTGAAAATCACGTTTTAATAC
ATTATACGTCTGATAGGCTACTTCATATTGCTGGAACAGAAATGCTAAATCAGCTAGACG
ACGCATTTGTGATTCAGGTGAATCTTGGCTATACACAATTGTGGAGTGATTGACTGGGCC
TGCATATCAGAGAACTCATGAGTAGTCAATGTAGTGTTGGTAGATAAATTGTCC

consensusID : consensus_6208#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 534
fasta sequence

                              [ACGAAATGCAAACTTTCTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTTGTTCTATGAGGAGACCGCTGATAAGATCATCTTCGTCTGAAGTTAATCGAATTAGTGCCACAGCAGCTTCATTATAGAGACCACGACTACATAATGCTTCAAAATTTAACAGAGTTGATCGCAAAGCAAGTTCTGGTGATAAATGTGATTGAAGGTAAGTAGCTACAGCTGAATCCATGAGATGATATGGGTATTGACGTTGGCTTGTCGCACCTTGAAGATAAACAGATAAGGCAGACATTTCCTCTAATAAACTCCATCCATGACCCATAACAATTGGCATAGTTGATTTGTAACTTCGTATTGCCAAAATCGGCTGTTTGGCCCGGGCATATCGATGTGCTGCTAATGCCATACGAAATGCANACTTTCTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTTGTTCTATGAGGAGACCGCTGATAAGATCATCTTCGCCTGAAGTTAATCGAATTAGTGCCAC]

[+] EMBL CD091038             [ACGAAATGCAAACTTTCTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTTGTTCTATGAGGAGACCGCTGATAAGATCATCTTCGTCTGAAGTTAATCGAATTAGTGCCACAGCAGCTTCATTATAGAGACCACGACTACATAATGCTTCAAAATTTAACAGAGTTGATCGCAAAGCAAGTTCTGGTGATAAATGTGATTGAAGGTAAGTAGCTACAGCTGAATCCATGAGATGATATGGGTATTGACGTTGGCTTGTCGCACCTTGAAGATAAACAGATAAGGCAGACATTTCCTCTAATAAACTCCATCCATGACCCATAACAATTGGCATAGTTGATTTGTAACTTCGTATTGCCAAAATCGGCTGTTTGGCCCGGGCATATCGATGTGCTGCTAATGCCATACGAAATGCANACTTTCTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTTGTTCTATGAGGAGACCGCTGATAAGATCATCTTCGCCTGAAGTTAATCGAATTAGTGCCAC]
[+] EMBL CD092153             [                                                                                                                                                                                         CAAGTTCTGGTGATAAATGTGATTGAGGGTAAGTAGCTACAGCTGAATCCATGAGATGATATGGGTATTGACGTTGGCTTGTCGCACCTTGAAGATAAACAGATAAGGCAGACATTTCCTCTAATAAACTCCATCCATGACCCATAACAATTGGCATAGTTGATTTGTAAC                                                                                                                                                                                  ]




>consensus_6208#1
ACGAAATGCAAACTTTCTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTTG
TTCTATGAGGAGACCGCTGATAAGATCATCTTCGTCTGAAGTTAATCGAATTAGTGCCAC
AGCAGCTTCATTATAGAGACCACGACTACATAATGCTTCAAAATTTAACAGAGTTGATCG
CAAAGCAAGTTCTGGTGATAAATGTGATTGAAGGTAAGTAGCTACAGCTGAATCCATGAG
ATGATATGGGTATTGACGTTGGCTTGTCGCACCTTGAAGATAAACAGATAAGGCAGACAT
TTCCTCTAATAAACTCCATCCATGACCCATAACAATTGGCATAGTTGATTTGTAACTTCG
TATTGCCAAAATCGGCTGTTTGGCCCGGGCATATCGATGTGCTGCTAATGCCATACGAAA
TGCANACTTTCTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTTGTTCTAT
GAGGAGACCGCTGATAAGATCATCTTCGCCTGAAGTTAATCGAATTAGTGCCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6208#0      -CGAAATGCAACTATTCNTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTT 59
consensus_6208#1      ACGAAATGCAAAC-TTTCTTAACATTGGACGTTTCAGTGATAGGACACAATGAGCTACTT 59
                       **********   **  ******************************************

consensus_6208#0      GTTCTATGAGGAGACCGCTGATAAGATCATCTTCGTCTGAAGTTAATCGAATTAGTGCCA 119
consensus_6208#1      GTTCTATGAGGAGACCGCTGATAAGATCATCTTCGTCTGAAGTTAATCGAATTAGTGCCA 119
                      ************************************************************

consensus_6208#0      CAGCAGCTTCATTATAGAGACCACGACTACATAATGCTTCAAAATTTAACAGAGTTGATC 179
consensus_6208#1      CAGCAGCTTCATTATAGAGACCACGACTACATAATGCTTCAAAATTTAACAGAGTTGATC 179
                      ************************************************************

consensus_6208#0      GCAAAGCAAGTTCTGGTGATAAATGTGATTGAAGGTAAGTAGCTACAGCTGAATCCATGA 239
consensus_6208#1      GCAAAGCAAGTTCTGGTGATAAATGTGATTGAAGGTAAGTAGCTACAGCTGAATCCATGA 239
                      ************************************************************

consensus_6208#0      GATGATATGGGTATTGACGTTGGCTTGTCGCACCTTGAAGATAAACAGATAAGGCAGACA 299
consensus_6208#1      GATGATATGGGTATTGACGTTGGCTTGTCGCACCTTGAAGATAAACAGATAAGGCAGACA 299
                      ************************************************************

consensus_6208#0      TTTCCT-----GAGCTCCAGC-ATGGTGTAACCAAGCTGAATCATTTTGAAAATCACGTT 353
consensus_6208#1      TTTCCTCTAATAAACTCCATCCATGACCCATAACAATTGGCATAGTTGATTTGTAACTTC 359
                      ******      * ***** * ***    *    *  **    * **      * ** * 

consensus_6208#0      TTAATACATTATACGTCTGATAGGCTACTTCATATTGCTGGAACAGAAATGCTAAATCAG 413
consensus_6208#1      GTATTGCCAAAATCGGCTGTTTGGCCCGGGCATATCGATGTGCTGCTAATGCCATACGAA 419
                       ** * *   *  ** *** * ***     ***** * **       ***** * *  * 

consensus_6208#0      CTAGACGACGCATTTGTGATTCAGGTGAATCTTGGCTATACACAATTGTGGAGTGATTGA 473
consensus_6208#1      ATGCANA---CTTTCTTAACATTGG-ACGTTTCAGTGATAGGACAC-----AATGAGCTA 470
                       *  *     * **  * *    **    * *  *  ***    *      * ***   *

consensus_6208#0      CTGGGCCTGCATATCAGAGAACTCATGAG-TAGTCAATG--TAGTGTTGGTAGATAAATT 530
consensus_6208#1      CTTGTTCTATG-AGGAGACCGCTGATAAGATCATCTTCGCCTGAAGTTAATCGAATTAGT 529
                      ** *  **    *  ***   ** ** ** *  **   *  *   ***  * **   * *

consensus_6208#0      GTCC- 534
consensus_6208#1      GCCAC 534
                      * *