These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6228#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 626 fasta sequence [TTGTTCTTTGTACTTAAAGTAATTTCATCTAATCCAAATATGCAGTCTTGAATTAGAAGATAAATTGAAGGTGTACTGAGTTTTGCATGATGCACAATGTTGACCATTTTCCACGGGAAGTAATAATCGCATAACTCAGAAATCACCATCAAATCATTCATTGAGAGTTACAGGTTTTGTATTCTTCTTTTCTTTTGTTTGATTATCTCATATGAAATCAACTTATTCATTTCAAAGAAATTTGTTCGCAGAAGTATACAAGTGAAACATGCCAAAGAGCGACCACATCGACTATGACATGTTTTTGGTGTGAAAAAGGGAAGGCGTGTATAGAAAGTAACGATCAGAACACTCATGGCTTGAAAATGAATGACTGCCGTGTTGAGGTTGGTACTTGTTAAACTTCATAGGTCGTTTGCAATAACCTCAAATCACACATTGTGAGCANATGTTTTCACTAGAAAAAATACTTTTATTGCTATCAGTAAGAAATAGCATGTTAGCCATCCTCAGTGACTAAATAAAAGCCTTGTATATGTTGACGACATATGAGTACATGCTTCCTTTTCGTGAAAACAGCAAACAAGGAATCAAAGCGTCGCTCACTATCATCGTTTCAAAGCGAA] [+] EMBL CD162349 [TTGTTCTTTGTACTTAAAGTAATTTCATCTAATCCAAATATGCAGTCTTGAATTAGAAGATAAATTGAAGGTGTACTGAGTTTTGCATGATGCACAATGTTGACCATTTTCCACGGGAAGTAATAATCGCATAACTCAGAAATCACCATCAAATCATTCATTGAGAGTTACAGGTTTTGTATTCTTCTTTTCTTTTGTTTGATTATCTCATATGAAATCAACTTATTCATTTCAAAGAAATTTGTTCGCAGAAGTATACAAGTGAAACATGCCAAAGAGCGACCACATCGACTATGACATGTTTTTGGTGTGAAAAAGGGAAGGCGTGTATAGAAAGTAACGATCAGAACACTCATGGCTTGAAAATGAATGACTGCCGTGTTGAGGTTGGTACTTGTTAAACTTCATAGGTCGTTTGCAATAACCTCAAATCACACATTGTGAGCANAT ] [-] EMBL CD162373 [ cGTNTGATATTCTCATATGAAATCAACTTATTCATTTCAAAGAAATTTGTTCGCAGAAGTATACAAGTGAAACATGCCAAAGAGCGACCACATCGACTATGACATGTTTTTGGTGTGAAAAAGGGAAGGCGTGTATAGAAAGTAACGATCAGAACACTCATGGCTTGAAAATGAATGACTGCCGTGTTGAGGTTGGTACTTGTTAAACTTCATAGGTCGTTTGCAATAACCTCAAATCTCACATTGTGAGCAAATGTTTTCACTAGAAAAAATACTTTTATTGCTATCAGTAAGAAATAGCATGTTAGCCATCCTCAGTGACTAAATAAAAGCCTTGTATATGTTGACGACATATGAGTACATGCTTCCTTTTCGTGAAAACAGCAAACAAGGAATCAAAGCGTCGCTCACTATCATCGTTTCAAAGCGAA] consensusID : consensus_6228#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [TTCACATACTGGATACTAATTGAACTCCATTGATCAGCAATTTATGTAAACCAAACGATGGGTTGACTGAAAGTTAGATAATTTTATAAGTTGACTAAGCTTAGTTAGAAAAATTTTAAAATACTCTGAATAAAGATAATTTTACTAGTCGTAACTCTTTACATAATTTTACATTCACTAATTTGGATAATGAACTCCGCCTGTTGCCAGCAGCATATTTACAATTGAAGAACATCTGAAACTCAAAACAACTGTCAACCAACACAAAGATCATCGTATACGGATTACCTCGATATTGCCTTAAGTTACAAGCTTTAT] [+] EMBL CD159924 [TTCACATACTGGATACTAATTGAACTCCATTGATCAGCAATTTATGTAAACCAAACGATGGGTTGACTGAAAGTTAGATAATTTTATAAGTTGACTAAGCTTAGTTAGAAAAATTTTAAAATACTCTGAATAAAGATAATTTTACTAGTCGTAACTCTTTACATAATTTTACATTCACTAATTTGGATAATGAACTCCGCCTGTTGCCAGCAGCATATTTACAATTGAAGAACATCTGAAACTCAAAACAACTGTCAACCAACACAAAGATCATCGTATACGGATTACCTCGATATTGCCTTAAGTTACAAGCTTTAT] consensusID : consensus_6228#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [GTATTGAAACCAAATGAATTGGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGCGTGGAACCGTTCGAGTGCTCTGGCCTACTTTGCACACTGAGTCTTTCTAATATGTTGACCCAAGCCCCGATTGCTAAACTAACAATGGCACAGCTTGTAGGGGAATATATGTATTCCGTAAGCCGTCGAGTACAAGCTATCAAATGATGGAAAAAGTCAAGCGCATTTATACAGCAACAAATTGTCCTTGAGCATCATAAATA] [+] EMBL CD162280 [GTATTGAAACCAAATGAATTGGTGATCTGCTTTAATGATTTTTATAGCTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGAATAGCGTGGAACCGTTCGAGTGCTCTGGCCTACTTTGCACACTGAGTCTTTCTAATATGTTGACCCAAGCCCCGATTGCTAAACTAACAATGGCACAGCTTGTAGGGGAATATATGTATTCCGTAAGCCGTCGAGTACAAGCTATCAAATGATGGAAAAAGTCAAGCGCATTTATACAGCAACAAATTGTCCTTGAGCATCATAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6228#1 --------TTCACATACTGGATACTAATTGAACTCCATTGATCAGCAATTTAT-GTAAAC 51 consensus_6228#0 TTGTTCTTTGTACTTAAAGTAATTTCATCTAATCCAAATATGCAGTCTTGAATTAGAAGA 60 consensus_6228#2 -------------GTATTGAAACCAAATGAATTGGTGATCTGCTTTAATGATTTTTATAG 47 ** * * ** * * * * * * consensus_6228#1 CAAACGATGGGTTGACTGAAAGTTAGATAATTTTATAAGTTGACTAAGCTTAGTTAGAAA 111 consensus_6228#0 TAAATTGAAGGTGTACTGAGTTTTGCATGATGCACAATGTTGACCATTTTCCACGGGAAG 120 consensus_6228#2 CTATACAAGATTTGCGGGGAAATTACGAGAAACAGTTTCGTAAGTCATTCTAATAACCGA 107 * * * ** * * * consensus_6228#1 -AATTTTAAAATACTCTGAATAAAGATAATTTTACTAGTCGTAACTCTTTACATAATTTT 170 consensus_6228#0 TAATAATCGCATAA-CTCAGAAATCACCATCAAATCATTCATTGAGAGTTACA-GGTTTT 178 consensus_6228#2 ATAGCGTGGAACCGTTCGAGTGCTCTGGCCTACTTTGCACACTGAGTCTTTCT-AATATG 166 * * * * * ** * * * consensus_6228#1 ACATTCACTAATTTGGATAATGAACTCCGCCTGTTGCCAGCAGCATATTTACAATTGAAG 230 consensus_6228#0 GTATTCTTCTTTTCTTTTGTTTGATTATCTCATATGAAATCAACTTATTCATTTCAAAGA 238 consensus_6228#2 TTGACCCAAGCCCCGATTGCTAAACTAACAATGGCACAGCTTGTAGGGGAATATATGTAT 226 * * * * * * consensus_6228#1 AACATCTGAAACTCAAAACAA-CTGTCAACCAACACAAAGATCATCGTATACGGATTAC- 288 consensus_6228#0 AATTTGTTCGCAGAAGTATAC-AAGTGAAACATGCCAAAGAGCGAC-CACATCGACTATG 296 consensus_6228#2 TCCGTAAGCCGTCGAGTACAAGCTATCAAATGATGGAAAAAGTCAAGCGCATTTA-TACA 285 * * * * * ** *** * * * ** consensus_6228#1 -CTCGATATTGCCTTAAGTTAC--AAGCTTTAT--------------------------- 318 consensus_6228#0 ACATGTTTTTGGTGTGAAAAAGGGAAGGCGTGTATAGAAAGTAACGATCAGAACACTCAT 356 consensus_6228#2 GCAACAAATTGTCCTTGAGCATCATAAATA------------------------------ 315 * *** * * * consensus_6228#1 ------------------------------------------------------------ consensus_6228#0 GGCTTGAAAATGAATGACTGCCGTGTTGAGGTTGGTACTTGTTAAACTTCATAGGTCGTT 416 consensus_6228#2 ------------------------------------------------------------ consensus_6228#1 ------------------------------------------------------------ consensus_6228#0 TGCAATAACCTCAAATCACACATTGTGAGCANATGTTTTCACTAGAAAAAATACTTTTAT 476 consensus_6228#2 ------------------------------------------------------------ consensus_6228#1 ------------------------------------------------------------ consensus_6228#0 TGCTATCAGTAAGAAATAGCATGTTAGCCATCCTCAGTGACTAAATAAAAGCCTTGTATA 536 consensus_6228#2 ------------------------------------------------------------ consensus_6228#1 ------------------------------------------------------------ consensus_6228#0 TGTTGACGACATATGAGTACATGCTTCCTTTTCGTGAAAACAGCAAACAAGGAATCAAAG 596 consensus_6228#2 ------------------------------------------------------------ consensus_6228#1 ------------------------------ consensus_6228#0 CGTCGCTCACTATCATCGTTTCAAAGCGAA 626 consensus_6228#2 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||