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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 799 fasta sequence
[AGCAAGCACAACTGATGAAGTAACTGGATTACATAAGAAAAATATCAAGACAATGAAACAAAATGAAGCCATAAAAATGAAACCAACTGATAAATTAAAATCAAAAGAAAAACAGAAGGTTAGAAGAATTACACAATTAAACTATTCATCAATTCAATTTCTTATTTAGAGAAAAAAAATTTAAATCAATATAGAGTTAATAAATTCTTGTGTGTGACTGCAGTTCATGGACGAACCAATCAGATCTAAGATAATAGGTCTTGGATTTTTGGCGCAAACTTCATTCATCCATTTAGCTAAATAGCATCTTGGTATTTTAGCTGATGTTAGTTTGCGATGTAAACCCTAACCCTAACCATCAACTGTAAATCACAATCCTAATTCCTCACATTACTTTATAACCCCCATTTAGTCCTAGTTATTAGTTGGACATTGTCAAGGTCACTCTAGTGTTGCTCAATGGTCGTCCACAAGTTATAGTCTCACCAATTCTGTTTTGCTTGTTTTATTATTGAAACTTGAAACAAGTATTGCCTTGAAACTTATCATCTTACATAGTTTATATACTTCTGAATAGATTCAAACAAATAAAGAATGAAACAGTTGTTCAATTGTGTAAATTAGTTTCTAGCAGTTATATTCTGCTATAATTCATTTATCAATTCCTTTTATAGAGCAAATGTTTCTTAATTTAGTCTTATCTGATTCTTGTATGCTGATGATAATGTTGACTGATTTCAAAAACATACACACAAACTATTATGTGTCAAATCTAAACATTTCAATAATACAATAAATA]
[+] EMBL AW017394 [AGCAAGCACAACTGATGAAGTAACTGGATTACATAAGAAAAATATCAAGACAATGAAACAAAATGAAGCCATAAAAATGAAACCAACTGATAAATTAAAATCAAAAGAAAAACAGAAGGTTAGAAGAATTACACAATTAAACTATTCATCAATTCAATTTCTTATTTAGAGAAAAAAAATTTAAATCAATATAGAGTTAATAAATTCTTGTGTGTGACTGCAGTTCATGGACGAACCAATCAGATCTAAGATAATAGGTCTTGGATTTTTGGCGCAAACTTCATTCATGCATTTAGCTAAATAGCATCTTGGTATTTTAGCTGATGTTAGTTTGCGATGTAAACCCTAACCCTAACCATCAACTGTAAATCACAATCCTAATTCCTCACATTACTTTATAACCCTCATTTAGTCCTAGTTATTAGATGG ]
[-] EMBL CD075564 [ TAATAGGTCTTGGATTTTTGGCGCAAACTTCATTCATCCATTTAGCTAAATAGCATCTTGGTATTTTAGCTGATGTTAGTTTGCGATGTAAACCCTAACCCTAACCATCAACTGTAAATCACAATCCTAATTCCTCACATTACTTTATAACCCCCATTTAGTCCTAGTTATTAGTTGGACATTGTCAAGGTCACTCTAGTGTTGCTCAATGGTCGTCCACAAGTTATAGTCTCACCAATTCTGTTTTGCTTGTTTTATTATTGAAACTTGAAACAAGTATTGCCTTGAAACTTATCATCTTACATAGTTTATATACTTCTGAATAGATTCAAACAAATAAAGAATGAAACAGTTGTTCAATTGTGTAAATTAGTTTCTAGCAGTTATATTCTGCTATAATTCATTTATCAATTCCTTTTATAGAGCAAATGTTTCTTAATTTAGTCTTATCTGATTCTTGTATGCTGATGATAATGTTGACTGATTTCAAAAACATACACACAAACTATTATGTGTCAAATCTAAACATTTCAATAATACAATAAATA]
[+] EMBL CD081849 [ ATAGGTCTTGGATTTTTGGCGCAAACTTCATTCATCCATTTAGCTAAATAGCATCTTGGTATTTTAGCTGATGTTAGTTTGCGATGTAAACCCTAACCCTAACCATCAACTGTAAATCACAATCCTAATTCCTCACATTACTTTATAACCCCCATTTAGTCCTAGTTATTAGTTGGACATTGTCAAGGTCACTCTAGTGTTGCTCAATGGTCGTCCACAAGTTATAGTCTCACCAATTCTGTTTTGCTTGTTTTATTATTGAAACTTGAAACAAGTATTGCCTTGAAACTTATCATCTTACATAGTTTATATACTTCTGAATAGATTCAAACAAATAAAGAATGAAACAGTTGTTCAATTGTGTAAATTAGTTTCTAGCAGTTATATTCTGCTATAATTCATTTATCAATTCCTTTTATAGAGCAAATGTTTCTTAATTTAGTCTTATCTGATTCTTGTATGCTGATGATAATGTTGACTGATTTCAAAAACATACACACAAACTATTATGTGTCAAATCTAAACATTTCAATAATACAATAAAT ]
consensusID : consensus_6232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence
[AAAGGAAAAAGCAATATCCTCAAATGCAACACGGAGAACGCCAAATCAATCACACTTGATGGCGAAACTTTAAAAGAGATGGAAACTCTCACGTACGTGGACAGCATCATTGATGGAAGTGGAGGATGTAATGCAGACGAATACACAAGGACTGTCAATGTGAGGGCAGCATTCCTACACTTGAATAACATATGGAAGTCAAAACAACTGCCAACCAACATCAAAGTCACAATCTTCAATACAAACTTGGAGAACTACTACAACTATCATCAAAATGGTACAAGTATTTATAAACAGTTGTCTACGCAACATATTCAATGTCCGTTTGTCGGATACCATCAGCAACAGCATACTGTGGGAGAGAGCAAATCAGCATCCATCTGAACAGGAAATTAGTAAAAGACGTTGGAAGTGGATAGGTTGCACATTGAGGAAATCACCAAACTGCATCACTAGGTAAAAGTTAACTTGTAATCCTGAAGGGGAACAGANNAGAGGAAGGCCAAAGAATACATTACACCGGGAAATAGAAGCAGATATGAATAGGAACTGGAACGGATGATTGAGGACAGAGTTAGATGGATAATGTTGGNTGGGTTGACCTATGCTCCTNCACGAGATGTACCANGGTGTAGTAAGTATATTGGTTATTATCTATTTGAG]
[+] EMBL CD094346 [AAAGGAAAAAGCAATATCCTCAAATGCAACACGGAGAACGCCAAATCAATCACACTTGATGGCGAAACTTTAAAAGAGATGGAAACTCTCACGTACGTGGACAGCATCATTGATGGAAGTGGAGGATGTAATGCAGACGAATACACAAGGACTGTCAATGTGAGGGCAGCATTCCTACACTTGAATAACATATGGAAGTCAAAACAACTGCCAACCAACATCAAAGTCACAATCTTCAATACAAACTTGGAGAACTACTACAACTATCATCAAAATGGTACAAGTATTTATAAACAGTTGTCTACGCAACATATTCAATGTCCGTTTGTCGGATACCATCAGCAACAGCATACTGTGGGAGAGAGCAAATCAGCATCCATCTGAACAGGAAATTAGTAAAAGACGTTGGAAGTGGATAGGTTGCACATTGAGGAAATCACCAAACTGCATCACTAGGTAAAAGTTAACTTGTAATCCTGAAGGGGAACAGANNAGAGGAAGGCCAAAGAATACATTACACCGGGAAATAGAAGCAGATATGAATAGGAACTGGAACGGATGATTGAGGACAGAGTTAGATGGATAATGTTGGNTGGGTTGACCTATGCTCCTNCACGAGATGTACCANGGTGTAGTAAGTATATTGGTTATTATCTATTTGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6232#0 AGCAAGCACAACTGATGAAGTAACTGGATTACATAAGAAAAATATCAAGACAATGAAACA 60
consensus_6232#1 ----------------------------AAAGGAAAAAGCAATATCCTCA-AATGCAACA 31
* ** * ****** * **** ****
consensus_6232#0 AAATGAA-GCCATAAAAATGAAACCAACTGAT-AAATTAAAATCAAAAGAAAAACAGAAG 118
consensus_6232#1 CGGAGAACGCCAAATCAATCACACTTGATGGCGAAACTTTAAAAGAGATGGAAACTCTCA 91
*** **** * *** * ** ** *** * ** * * ****
consensus_6232#0 GTTAGAAGAATTACACAATTAAACTATTCATCAATTCAATTTCTTATTTAGAGAAAAAAA 178
consensus_6232#1 CGTACGTGGACAGCATCATTGATGGAAGTGGAGGATGTAATGCAGACGAATACACAAGGA 151
** * * ** *** * * * * * * * * * * ** *
consensus_6232#0 ATTTAAATCAATATAGAGTTAATAAATTCTTGTGTGTGACTG-CAGTTCATGGACGAACC 237
consensus_6232#1 CT----GTCAATGTGAGGGCAGCA--TTCCTACACTTGAATAACATATGGAAGTCAAAAC 205
* ***** * * * * *** * *** * ** * * * ** *
consensus_6232#0 AATCAG-ATCTAAGATAATAGGTCTTGGATTTTTGGCGCAAACTTCATTCATCCATTTAG 296
consensus_6232#1 AACTGCCAACCAACATCA-AAGTCACA-ATCTTCAATACAAACTTGGAGAACTACTACAA 263
** * * ** ** * * *** ** ** ******* * * *
consensus_6232#0 CTAAATAGCATCTTGGTA----TTTTAGCTGATGTTAGTTTGCGATGTAAACCCTAACCC 352
consensus_6232#1 CTAT-CATCAAAATGGTACAAGTATTTATAAACAGTTGTCTACGCAACATATTCAATGTC 322
*** * ** ***** * ** * * ** * ** * * * * *
consensus_6232#0 TAACCATCAACTGTAAATCACAAT--CCTAATTCCTCACATTACTTTATAACCCCCATTT 410
consensus_6232#1 CGTTTGTCGGATACCATCAGCAACAGCATACTGTGGGAGAGAGCAAATCAGCATCCATCT 382
** * * *** * ** * * * * * * **** *
consensus_6232#0 AGTCCTAGTTATTAGTTGGACATTGTCAAGGTCACTCTAGTGTTGCTCAATGGTCGTCCA 470
consensus_6232#1 -GAACAGGAAATTAGTAAAAGACGTTGGAAGTGGATAGGTTGCACATTGA-GGAAATCAC 440
* * * ****** * * * * ** * ** * * ** **
consensus_6232#0 CAAGTTATAGTCTCACCAATTCTGTTTTG-CTTGTTTTATT-ATTGAAACTTGAAACAAG 528
consensus_6232#1 CAAACTGCA---TCACTAGGTAAAAGTTAACTTGTAATCCTGAAGGGGAACAGANNAGAG 497
*** * * **** * * ** ***** * * * * * ** **
consensus_6232#0 TATTGCCTTGAAACTTATCATCTTACATAGTTTATATACTTCTGAATAG--ATTCAAACA 586
consensus_6232#1 GAAGGCCAAAGAATACATTACACCGGGAAATAGAAGCAGATATGAATAGGAACTGGAACG 557
* *** ** ** * * * * * * ******* * * ***
consensus_6232#0 AATAAAGAATGAAACAGTT-GTTCAATTGTGTAAATTAGTTTCTAGCAGTTATATTCTGC 645
consensus_6232#1 GATGATTGAGGACAGAGTTAGATGGATAATGTTGGNTGGGTTG----ACCTATGCTCCTN 613
** * * ** * **** * * ** *** * * ** * *** **
consensus_6232#0 TATAATTCATTTATCAATTCCTTTTATAGAGCAAATGTTTCTTAATTTAGTCTTATCTGA 705
consensus_6232#1 CACGAGATGTACCANGGTGTAGTAAGTATATTGGTTATTATCTATTTGAG---------- 663
* * * * * ** * * ** ** ** **
consensus_6232#0 TTCTTGTATGCTGATGATAATGTTGACTGATTTCAAAAACATACACACAAACTATTATGT 765
consensus_6232#1 ------------------------------------------------------------
consensus_6232#0 GTCAAATCTAAACATTTCAATAATACAATAAATA 799
consensus_6232#1 ----------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||