cluster # 6240

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6240 cluster # 6240 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6240#0 length = 631 sequences # 3

consensus_6240#1 length = 255 sequences # 1

consensusID : consensus_6240#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 631
fasta sequence

                              [ATCAACCCCGGCGGGCTTTGGAACTTCGCTGAGATGATATATGCTCTCAATTTACTTCACTCTATGCTTCTATATACTTGCACATAATGGATGGCAATTTGTCAATTTTGTATCCAGATTGTAATATACTCCCATTTGACTCCGTTAATGGTAATCTGATGAACTATTCTAGGCTGTATTCCAATAGTTGTGGTCTAACATCAAGCGCATATCTGGACGAATTCCAAAACATGAAGGAAGATTCACAAGATTTTACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGTGCAACAGTTTTTATTCTGAGGGCAGCAACTGGTGCTCTAGCTGCGGGGAGCTACTAATTGGTGCGGACGTATGTTCTCCAGGTGAACCAAAATTCATCGCAAATGAAGTTTCAAAGACACAAACCAATATGATGGATTCAAGTAAACCTTTATCTAATTTGTCTTCAAGTGTACCCGTTGGTTTCAATATGTCTTGTGAGAATGCTACACGCTCGCCCAATTTAGTTGCTTATCCACGTCATCCAATATTACCAGTCGCTACAGATGCAGCGTTTTCTTTACCGTCTTGTATAGCGTCAAAATTCTCACAAGGAAATCTAAATGCACAACA]

[+] EMBL CD122583             [ATCAACCCCGGCGGGCTTTGGAACTTCGCTGAGATGATATATGCTCTCAATTTACTTCACTCTATGCTTCTATATACTTGCACATAATGGATGGCAATTTGTCAATTTTGTATCCAGATTGTAATATACTCCCATTTGACTCCGTTAATGGTAATCTGATGAACTATTCTAGGCTGTATTCCAATAGTTGTGGTCTAACATCAAGCGCATATCTGGACGAATTCCAAAACATGAAGGAAGATTCACAAGATTTTACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGTGCAAC                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD163411             [                                                                                                                                                                                                                                                             TACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGTGCAACAGTTTTTATTCTGAGGGCAGCAACTGGTGCTCTAGCTGCGGGGAGCTACTAATTGGTGCGGACGTATGTTCTCCAGGTGAACCAAAATTCATCGCAAATGAAGTTTCAAAGACACAAACCAATATGATGGATTCAAGTAAACCTTTATCTAATTTGTCTTCAAGTGTACCCGTTGGTTTCAATATGTCTTGTGAGAATGCTACACGCTCGCCCAATTTAGTTGCTTATCCACGTCATCCAATATTACCAGTCGCTACAGATGCAGCGTTTTCTTTACCGTCTTGTATAGCGTCAAAATTCTCACAAGGAAATCTAAATGCACAAC ]
[-] EMBL CD163477             [                                                                                                                                                                                                                                                              ACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGTGCAACAGTTTTTATTCTGAGGGCAGCAACTGGTGCTCTAGCTGCGGGGAGCTACTAATTGGTGCGGACGTATGTTCTCCAGGTGAACCAAAATTCATCGCAAATGAAGTTTCAAAGACACAAACCAATATGATGGATTCAAGTAAACCTTTATCTAATTTGTCTTCAAGTGTACCCGTTGGTTTCAATATGTCTTGTGAGAATGCTACACGCTCGCCCAATTTAGTTGCTTATCCACGTCATCCAATATTACCAGTCGCTACAGATGCAGCGTTTTCTTTACCGTCTTGTATAGCGTCAAAATTCTCACAAGGAAATCTAAATGCACAACA]




>consensus_6240#0
ATCAACCCCGGCGGGCTTTGGAACTTCGCTGAGATGATATATGCTCTCAATTTACTTCAC
TCTATGCTTCTATATACTTGCACATAATGGATGGCAATTTGTCAATTTTGTATCCAGATT
GTAATATACTCCCATTTGACTCCGTTAATGGTAATCTGATGAACTATTCTAGGCTGTATT
CCAATAGTTGTGGTCTAACATCAAGCGCATATCTGGACGAATTCCAAAACATGAAGGAAG
ATTCACAAGATTTTACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGT
GCAACAGTTTTTATTCTGAGGGCAGCAACTGGTGCTCTAGCTGCGGGGAGCTACTAATTG
GTGCGGACGTATGTTCTCCAGGTGAACCAAAATTCATCGCAAATGAAGTTTCAAAGACAC
AAACCAATATGATGGATTCAAGTAAACCTTTATCTAATTTGTCTTCAAGTGTACCCGTTG
GTTTCAATATGTCTTGTGAGAATGCTACACGCTCGCCCAATTTAGTTGCTTATCCACGTC
ATCCAATATTACCAGTCGCTACAGATGCAGCGTTTTCTTTACCGTCTTGTATAGCGTCAA
AATTCTCACAAGGAAATCTAAATGCACAACA

consensusID : consensus_6240#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [CGGACGCATCATCCACCATTATGTGCAAGTATATAGAAGCATAGAGTGAAGTAAATTGAGAGCATATATCTGACAAACAAGTAAAACAATAGGACATTAAAAAATCAATGTGAACATATTCTTGTTTATTGAATATACATTAGAGAGTAGGAGTTTTAACTGACAGCAAAACATCCGTTAAAAGAAAACTAATTTAGTCTGTTAAAAATCTGCATTCATTTTAATACGTCAAGTTAATAGACTTACAATAGTAGA]

[+] EMBL CD064029             [CGGACGCATCATCCACCATTATGTGCAAGTATATAGAAGCATAGAGTGAAGTAAATTGAGAGCATATATCTGACAAACAAGTAAAACAATAGGACATTAAAAAATCAATGTGAACATATTCTTGTTTATTGAATATACATTAGAGAGTAGGAGTTTTAACTGACAGCAAAACATCCGTTAAAAGAAAACTAATTTAGTCTGTTAAAAATCTGCATTCATTTTAATACGTCAAGTTAATAGACTTACAATAGTAGA]




>consensus_6240#1
CGGACGCATCATCCACCATTATGTGCAAGTATATAGAAGCATAGAGTGAAGTAAATTGAG
AGCATATATCTGACAAACAAGTAAAACAATAGGACATTAAAAAATCAATGTGAACATATT
CTTGTTTATTGAATATACATTAGAGAGTAGGAGTTTTAACTGACAGCAAAACATCCGTTA
AAAGAAAACTAATTTAGTCTGTTAAAAATCTGCATTCATTTTAATACGTCAAGTTAATAG
ACTTACAATAGTAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6240#0      ATCAACCCCGGCGGGCTTTGGAACTTCGCTGAGATGATATATGCTCTCAATTTACTTCAC 60
consensus_6240#1      ------------------------------------------------------------
                                                                                  

consensus_6240#0      TCTATGCTTCTATATACTTGCACATAATGGATGGCAATTTGTCAATTTTGTATCCAGATT 120
consensus_6240#1      ------------------------------------------------------------
                                                                                  

consensus_6240#0      GTAATATACTCCCATTTGACTCCGTTAATGGTAATCTGATGAACTATTCTAGGCTGTATT 180
consensus_6240#1      ------------------------------------------------------------
                                                                                  

consensus_6240#0      CCAATAGTTGTGGTCTAACATCAAGCGCATATCTGGACGAATTCCAAAACATGAAGGAAG 240
consensus_6240#1      ------------------------------------------------------CGGACG 6
                                                                             *** *

consensus_6240#0      ATTCACAAGATTTTACACAGAAGCACATGTCCGGTAGAAAAACGTTTATGTGTCCCAAGT 300
consensus_6240#1      CATCATCCACCATTATGTGCAAGTATAT---------AGAAGCATAGA-GTGAAGTAAAT 56
                        ***       ***     *** * **         * ** * *  * ***    ** *

consensus_6240#0      GCAACAGTTTTTATTCTGAGGGCAGCAACTGGTGCTCTAGCTGCGGGGAGCTACTAATTG 360
consensus_6240#1      -TGAGAGCATATAT-CTGACA--AACAAGTAAAACAATA-----GGACATTAAAAAATCA 107
                         * **  * *** ****    * *** *    *  **     **  *   *  ***  

consensus_6240#0      GTGCGGACGTATGTTCTCCAGGTGAACCAAAATTCATCGCAAATGAAGTTTCAAAGACAC 420
consensus_6240#1      ATGTGAACATATTCTTGTTTATTGAATATACATTAG--AGAGTAGGAGTTTTAA---CTG 162
                       ** * ** ***  *       ****   * ***      *   * ***** **   *  

consensus_6240#0      AAACCAATATGATGGATTCAAGTAAACCTTTATCTAATTTGTCTTCAAGTGTACCCGTTG 480
consensus_6240#1      ACAGCAAAACATCCGTTAAAAGAAAAC--TAATTTAGTCTGTT---AAAAATCTGCATTC 217
                      * * *** *     * *  *** ****  * ** ** * ***    **   *   * ** 

consensus_6240#0      GTTTCAATATGTCTTGTGAGAATGCTACACGCTCGCCCAATTTAGTTGCTTATCCACGTC 540
consensus_6240#1      ATTTTAATACGTCAAGTTAATAGACT-TACAATAGTAGA--------------------- 255
                       *** **** ***  ** *  *  **  **  * *   *                     

consensus_6240#0      ATCCAATATTACCAGTCGCTACAGATGCAGCGTTTTCTTTACCGTCTTGTATAGCGTCAA 600
consensus_6240#1      ------------------------------------------------------------
                                                                                  

consensus_6240#0      AATTCTCACAAGGAAATCTAAATGCACAACA 631
consensus_6240#1      -------------------------------