These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 883 fasta sequence [AGTACGGAAGCCAACCAGCAGTGACCAGATTTTTCCACGGGATATGTCACGTCTAAATGTAAAATGGCGCTAAATACACTTAAAGCATTGGCGTGATATGTTCGTGCAACACGATATAGTTGGGTACGTGGAATCCCAATAAGCATATCTAAACCAAGAGGCCATGCGATTTCTTCCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTCTACTTTGCGCACGATTGCATCAGACAAAAAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGGACAGGAGGTATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATATCTCCATTTAGCTAGGGATGCGTGACCTACAAAGTATGGAAAACCGGACTGATGCGTGAGTAAATCAGATACAGTAACATTGGCAACCACGAATTGAGGAAGATAATGTTGTATCGAAGATTCAATATCCAGAAGTTCGTCTTGGTACAACTTAGCGAATGAGAAAGGAACAACAACCATAGACACAGTGAACAGTTGGCTAATAGTTGAAGTTACCCATGGCAGTCGAAATCGTTTATCTACATAACCTCCAATCGTATCGACAACATGTTCCCCACGATAGTAGACAGAAAAAGAAGAACCAAGTTCATTGTTTTTCTGTATTTGGTCTCTAAAATATACACGTTATATTAACTTACTTATAAACGTGGATTGCGTGTTTAAATTGAGTAGAACTTGACCCACTCATTTGTGGTTGCAAATAATTAAAAAGTGAATATAAATATCCCAATACAAAGCATGATATACCCAGAATAATACCAAGCCAGGCTGAGAAATGGATCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCG] [-] EMBL CD084262 [AGTACGGAAGCCAACCAGCAGTGACCAGATTTTTCCACGGGATATGTCACGTCTAAATGTAAAATGGCGCTAAATACACTTAAAGCATTGGCGTGATATGTTCGTGCAACACGATATAGTTGGGTACGTGGAATCCCAATAAGCATATCTAAACCAAGAGGCCATGCGATTTCTTCCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTCTACTTTGCGCACGATTGCATCAGACAAAAAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGGACAGGAGGTATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATATCTCCATTTAGCTAGGGATGCGTGACCTACAAAGTATGG ] [+] EMBL CD097416 [ GATGAAACACTTGAGTTCGTGGTAGGACAGGAGGTATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATCTCTCCATTTAGCTAGGGATGCGTGACCTACAAAGTATGGAAAACCGGACTGATGCGTGAGTAAATCAGATACAGTAACATTGGCAACCACGAATTGAGGAAGATAATGTTGTATCGAAGATTCAATATCCAGAAGTTCGTCTTGGTACAACTTAGCGAATGAGAAAGGAACAACAACCATAGACACAGTGAACAGTTGGCTAATAGTTGAAGTTACCCATGGCAGTCGAAATCGTTTATCTACATAACCTCCAATCGTATCGACAACATGTTCCCCACGATAGTAGACAGAAAAAGAAGAACCAAGTTCATTGTTTTTCTGTATTTGGTCTCTAAAATATACACGTTATATTAACTTACTTATAAACGTGGATTGCGTGTTTAAATTGAGTAGAACTTGACCCACT ] [-] EMBL CD133668 [ CATAACCTCCAATCGTATCGACAACATGTTCCCCACGATAGTAGACAGAAAAAGAAGAACCAAGTTCATTGTTTTTCTGTATTTGATCTCTAAAATATACACGTTATATTAACTTACTTATAAACATGGATTGCGTGTTTAAATTGAGTAGAACTTGACCCACTCATTTGTGGTTGCAAATAATTAAAAAGTGAATATAAATATCCCAATACAAAGCATGATATACCCAGAATAATACCAAGCCAGGCTGAGAAATGGATCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCG] consensusID : consensus_6241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CAGTTTACAAGAATATCTTGAACAATAGAATTTCCATGTATTAAATTTTGCACACAAACTAATGCTGAATAATGATCGGAAATGAGAATCACCGTGTAGCAATCAAGAGGCCATGCGATTTCTTCCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTGTACTTTGCGCACGATTGCATCAGACAATAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGAGACAGGAGGTATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATCTCTCCATTTAGCTAGGGATGCGTGACCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCGTTTCGTTTCCTCAGGTTCTGGG] [-] EMBL CD179693 [CAGTTTACAAGAATATCTTGAACAATAGAATTTCCATGTATTAAATTTTGCACACAAACTAATGCTGAATAATGATCGGAAATGAGAATCACCGTGTAGCAATCAAGAGGCCATGCGATTTCTTCCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTGTACTTTGCGCACGATTGCATCAGACAATAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGAGACAGGAGGTATCTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATCTCTCCATTTAGCTAGGGATGCGTGACCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCGTTTCGTTTCCTCAGGTTCTGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6241#0 AGTACGGAAGCCAACCAGCAGTGACCAGATTTTTCCACGGGATATGTCACGTCTAAATGT 60 consensus_6241#1 ------------------------------------------------------CAGTTT 6 * * * consensus_6241#0 AAAATGGCGCTAAATACACTTAAAGCATTGGCGTGATATGTTCGTGCA-ACACGATATAG 119 consensus_6241#1 ACAAGAATATCTTGAACAAT-AGAATTTCCATGTATTAAATTT-TGCACACAAACTAATG 64 * ** *** * * * * ** ** ** **** *** ** * consensus_6241#0 TTGGGTA----CGTGGAATCCCAATAAGCATATCTAAACCAAGAGGCCATGCGATTTCTT 175 consensus_6241#1 CTGAATAATGATCGGAAATGAGAATCACCGTGTAGCAATCAAGAGGCCATGCGATTTCTT 124 ** ** * *** *** * * * * ** ********************* consensus_6241#0 CCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTCTACTTTGCGCACGATTGCATCAG 235 consensus_6241#1 CCATGAAATAACGTGCCAGTGTCCGTTTCTTGTGGTGTACTTTGCGCACGATTGCATCAG 184 ************************************ *********************** consensus_6241#0 ACAAAAAAGGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAG-GACAGGAGGTAT 294 consensus_6241#1 ACAATAA-GGCCATTGAGTGTAGATGAAACACTTGAGTTCGTGGTAGAGACAGGAGGTAT 243 **** ** *************************************** ************ consensus_6241#0 CTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATATCTCCATTTAGCTAGGGATGC 354 consensus_6241#1 CTGATTAATGATGTCATTCAGCGCATTCCTGTGGTCATCTCTCCATTTAGCTAGGGATGC 303 ************************************** ********************* consensus_6241#0 GTGACCTACA---AAGTATGGAAAACCGGACTGATGCGTGAGTAAATCAGATACAGTAAC 411 consensus_6241#1 GTGACCGACATCAAGGCGCGGTAAA--AATCAGATCCTTTCA-AAGTCGCCCGCCGTTTC 360 ****** *** * * ** *** * *** * * ** ** * ** * consensus_6241#0 ATTGGCAACCACGAATTGAGGAAGATAATGTTGTATCGAAGATTCAATATCCAGAAGTTC 471 consensus_6241#1 GTTTCC--TCAGGTTCTGGG---------------------------------------- 378 ** * ** * ** * consensus_6241#0 GTCTTGGTACAACTTAGCGAATGAGAAAGGAACAACAACCATAGACACAGTGAACAGTTG 531 consensus_6241#1 ------------------------------------------------------------ consensus_6241#0 GCTAATAGTTGAAGTTACCCATGGCAGTCGAAATCGTTTATCTACATAACCTCCAATCGT 591 consensus_6241#1 ------------------------------------------------------------ consensus_6241#0 ATCGACAACATGTTCCCCACGATAGTAGACAGAAAAAGAAGAACCAAGTTCATTGTTTTT 651 consensus_6241#1 ------------------------------------------------------------ consensus_6241#0 CTGTATTTGGTCTCTAAAATATACACGTTATATTAACTTACTTATAAACGTGGATTGCGT 711 consensus_6241#1 ------------------------------------------------------------ consensus_6241#0 GTTTAAATTGAGTAGAACTTGACCCACTCATTTGTGGTTGCAAATAATTAAAAAGTGAAT 771 consensus_6241#1 ------------------------------------------------------------ consensus_6241#0 ATAAATATCCCAATACAAAGCATGATATACCCAGAATAATACCAAGCCAGGCTGAGAAAT 831 consensus_6241#1 ------------------------------------------------------------ consensus_6241#0 GGATCGACATCAAGGCGCGGTAAAAATCAGATCCTTTCAAAGTCGCCCGCCG 883 consensus_6241#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||