These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6242#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1239 fasta sequence [AAATACAACCTCCACTTCGACCAAATGTAACTGAGTTATTAGATACAAAAACTGTGAAGGAGGTTCAGAATAATGGGACTGATGGTGCCGGTGATAGTTTCCTTTTGGATGATGTTGCTATAACTAATAATCATTGTCGGTCAGATATTGCGCAAATCAGTAACAACAGTCTTAGTAACAATTCTGAAAATGAAATTCAACACGAAAAACTCATTAAAACTGTGCATCGTTTAGCGACTACAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTGGTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTAATGTTGCTACTAAACTGGTTGCTGGTTCATCAAAGTCGTCTATACCAATCATTCATTCCACTGCTGGTTCACCAGATTTATCAACTAATAGTACTAGTAGTACTACTAGTAGTTCACATTTTCTTGGTCAAGATGAAGAACTTTTATTGGATATACTTGAAGAGGGTGTGGAATTACACTTTGTCACAAGGCATCTATTCCTATACGATCATGCTTTGATTATCGCCGATGCAGCTATGGAATTAACCACCACCACTACACTACTTGAAAATAGCAGTAGCTTGAATGGAAACAAATCGCTGAATGATAATAGTGATAATCATAAACCTAAATTACAGTGTCGATTTCGACACGCATTACCTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTGACCAATTGTTATGGTTCTGTCTATCAGAAAGAACACGCTATTTAGGTTCTCCATTTGAATCGTCAGTTGCTGCTGCATCACCGCCTCAATCACATTTATGTTATATTATAGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTAGACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTTGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTAACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAATTATCTTCTGGTATTGGCAATTTAACAATGAATC] [+] EMBL CD184535 [AAATACAACCTCCACTTCGACCAAATGTAACTGAGTTATTAGATACAAAAACTGTGAAGGAGGTTCAGAATAATGGGACTGATGGTGCCGGTGATAGTTTCCTTTTGGATGATGTTGCTATAACTAATAATCATTGTCGGTCAGATATTGCGCAAATCAGTAACAACAGTCTTAGTAACAATTCTGAAAATGAAATTCAACACGAAAAACTCATTAAAACTGTGCATCGTTTAGCGACTACAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTGGTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTAATGTTGCTACTAAACTGGTTGC ] [+] EMBL CD121073 [ ATTAAAACTGTGCATCGTTTAGCGACTACAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTGGTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTAATGTTGCTACTAAACTGGTTGCTGGTTCATCAAAGTCGTCTATACCAATCATTCATTCCACTGCTGGTTCACCAGATTTATCAACTAATAGTACTAGTAGTACTACTAGTAGTTCACATTTTCTTGGTCAAGATGAAGAACTTTTATTGGATATACTTGAAGAGGGTGTGGAATTACACTTTGTCACAAGGCATCTATTCCTATACGATCATGCTTTGATTATCGCCGATGCAGCTATGGAATTAACCACCACCACTACACTACTTGAAAATAGCAGTAGCTTGAATGGAAACAAATCGCTGAATGATAATAGTGATAATCATAAACCTAAATTACAGTGTCGATTTCGACACGCATTACCTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTGACCAA ] [+] EMBL CD127627 [ AATT CAGTGTCGATTTCGACACGCATTACCTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTGACCAATTGTTATGGTTCTGTCTATCAGAAAGAACACGCTATTTAGGTTCTCCATTTGAATCGTCAGTTGCTGCTGCATCACCGCCTCAATCACATTTATGTTATATTATAGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTAGACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTTGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTAACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAATTATCTTCTGGTATTGGCAATTTAACAATGAATC] consensusID : consensus_6242#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [ACTAGTGATTGGCCGGCCCGGTCTGGGCGCCTCAATCACATTTATGTTATATTATCGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTACACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTGGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTGACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAACTATCTTCTGGTATTGGCAATTTAACAATGAATCAATCAATGCTGCCTACATGTTCCACATCATCGTTACAACAATCAAGCACATTGTTACAATCCACAAATTCACATATTGTATGATGTAAATTTTTTTCTCCAAAGTCATAAGTCTTCCGTTTTCTCCTGTCTGTATAAATA] [+] EMBL CD200890 [ACTAGTGATTGGCCGGCCCGGTCTGGGCGCCTCAATCACATTTATGTTATATTATCGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTACACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTGGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTGACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAACTATCTTCTGGTATTGGCAATTTAACAATGAATCAATCAATGCTGCCTACATGTTCCACATCATCGTTACAACAATCAAGCACATTGTTACAATCCACAAATTCACATATTGTATGATGTAAATTTTTTTCTCCAAAGTCATAAGTCTTCCGTTTTCTCCTGTCTGTATAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6242#0 AAATACAACCTCCACTTCGACCAAATGTAACTGAGTTATTAGATACAAAAACTGTGAAGG 60 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 AGGTTCAGAATAATGGGACTGATGGTGCCGGTGATAGTTTCCTTTTGGATGATGTTGCTA 120 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 TAACTAATAATCATTGTCGGTCAGATATTGCGCAAATCAGTAACAACAGTCTTAGTAACA 180 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 ATTCTGAAAATGAAATTCAACACGAAAAACTCATTAAAACTGTGCATCGTTTAGCGACTA 240 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 CAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTG 300 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 GTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTA 360 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 ATGTTGCTACTAAACTGGTTGCTGGTTCATCAAAGTCGTCTATACCAATCATTCATTCCA 420 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 CTGCTGGTTCACCAGATTTATCAACTAATAGTACTAGTAGTACTACTAGTAGTTCACATT 480 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 TTCTTGGTCAAGATGAAGAACTTTTATTGGATATACTTGAAGAGGGTGTGGAATTACACT 540 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 TTGTCACAAGGCATCTATTCCTATACGATCATGCTTTGATTATCGCCGATGCAGCTATGG 600 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 AATTAACCACCACCACTACACTACTTGAAAATAGCAGTAGCTTGAATGGAAACAAATCGC 660 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 TGAATGATAATAGTGATAATCATAAACCTAAATTACAGTGTCGATTTCGACACGCATTAC 720 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 CTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTG 780 consensus_6242#1 ------------------------------------------------------------ consensus_6242#0 ACCAATTGTTATGGTTCTGTCTATCAGAAAGAACACGCTATTTAGGTTCTCCATTTGAAT 840 consensus_6242#1 ------------------------------------------------------ACTAGT 6 * * consensus_6242#0 CGTCAGTTGCTGCTGCATCACCGCCTCAATCACATTTATGTTATATTATAGCGCCAAAAT 900 consensus_6242#1 GATTGGCCGGCCCGGTCTGGGCGCCTCAATCACATTTATGTTATATTATCGCGCCAAAAT 66 * * * * * * **************************** ********** consensus_6242#0 CTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTAGAC 960 consensus_6242#1 CTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTACAC 126 ********************************************************* ** consensus_6242#0 GTTTATCTCAAGCATATCTTATGAATAATGTATCTTTTGGTTCTGGTGACCCTAATAGCG 1020 consensus_6242#1 GTTTATCTCAAGCATATCTTATGAATAATGTATCTTTGGGTTCTGGTGACCCTAATAGCG 186 ************************************* ********************** consensus_6242#0 GATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTT 1080 consensus_6242#1 GATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTT 246 ************************************************************ consensus_6242#0 ATCCTAGTGGTGTGTTATTTAACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATA 1140 consensus_6242#1 ATCCTAGTGGTGTGTTATTTGACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATA 306 ******************** *************************************** consensus_6242#0 AAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAG 1200 consensus_6242#1 AAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAG 366 ************************************************************ consensus_6242#0 ATCAATTATCTTCTGGTATTGGCAATTTAACAATGAATC--------------------- 1239 consensus_6242#1 ATCAACTATCTTCTGGTATTGGCAATTTAACAATGAATCAATCAATGCTGCCTACATGTT 426 ***** ********************************* consensus_6242#0 ------------------------------------------------------------ consensus_6242#1 CCACATCATCGTTACAACAATCAAGCACATTGTTACAATCCACAAATTCACATATTGTAT 486 consensus_6242#0 ----------------------------------------------------------- consensus_6242#1 GATGTAAATTTTTTTCTCCAAAGTCATAAGTCTTCCGTTTTCTCCTGTCTGTATAAATA 545 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||