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Schistosoma mansoni
cluster # 6242 cluster # 6242       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6242#0 length = 1239 sequences # 3  
consensus_6242#1 length = 545 sequences # 1  

consensusID : consensus_6242#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1239
fasta sequence
                              [AAATACAACCTCCACTTCGACCAAATGTAACTGAGTTATTAGATACAAAAACTGTGAAGGAGGTTCAGAATAATGGGACTGATGGTGCCGGTGATAGTTTCCTTTTGGATGATGTTGCTATAACTAATAATCATTGTCGGTCAGATATTGCGCAAATCAGTAACAACAGTCTTAGTAACAATTCTGAAAATGAAATTCAACACGAAAAACTCATTAAAACTGTGCATCGTTTAGCGACTACAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTGGTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTAATGTTGCTACTAAACTGGTTGCTGGTTCATCAAAGTCGTCTATACCAATCATTCATTCCACTGCTGGTTCACCAGATTTATCAACTAATAGTACTAGTAGTACTACTAGTAGTTCACATTTTCTTGGTCAAGATGAAGAACTTTTATTGGATATACTTGAAGAGGGTGTGGAATTACACTTTGTCACAAGGCATCTATTCCTATACGATCATGCTTTGATTATCGCCGATGCAGCTATGGAATTAACCACCACCACTACACTACTTGAAAATAGCAGTAGCTTGAATGGAAACAAATCGCTGAATGATAATAGTGATAATCATAAACCTAAATTACAGTGTCGATTTCGACACGCATTACCTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTGACCAATTGTTATGGTTCTGTCTATCAGAAAGAACACGCTATTTAGGTTCTCCATTTGAATCGTCAGTTGCTGCTGCATCACCGCCTCAATCACATTTATGTTATATTATAGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTAGACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTTGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTAACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAATTATCTTCTGGTATTGGCAATTTAACAATGAATC]

[+] EMBL CD184535             [AAATACAACCTCCACTTCGACCAAATGTAACTGAGTTATTAGATACAAAAACTGTGAAGGAGGTTCAGAATAATGGGACTGATGGTGCCGGTGATAGTTTCCTTTTGGATGATGTTGCTATAACTAATAATCATTGTCGGTCAGATATTGCGCAAATCAGTAACAACAGTCTTAGTAACAATTCTGAAAATGAAATTCAACACGAAAAACTCATTAAAACTGTGCATCGTTTAGCGACTACAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTGGTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTAATGTTGCTACTAAACTGGTTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD121073             [                                                                                                                                                                                                                    ATTAAAACTGTGCATCGTTTAGCGACTACAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTGGTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTAATGTTGCTACTAAACTGGTTGCTGGTTCATCAAAGTCGTCTATACCAATCATTCATTCCACTGCTGGTTCACCAGATTTATCAACTAATAGTACTAGTAGTACTACTAGTAGTTCACATTTTCTTGGTCAAGATGAAGAACTTTTATTGGATATACTTGAAGAGGGTGTGGAATTACACTTTGTCACAAGGCATCTATTCCTATACGATCATGCTTTGATTATCGCCGATGCAGCTATGGAATTAACCACCACCACTACACTACTTGAAAATAGCAGTAGCTTGAATGGAAACAAATCGCTGAATGATAATAGTGATAATCATAAACCTAAATTACAGTGTCGATTTCGACACGCATTACCTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTGACCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD127627             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AATT CAGTGTCGATTTCGACACGCATTACCTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTGACCAATTGTTATGGTTCTGTCTATCAGAAAGAACACGCTATTTAGGTTCTCCATTTGAATCGTCAGTTGCTGCTGCATCACCGCCTCAATCACATTTATGTTATATTATAGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTAGACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTTGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTAACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAATTATCTTCTGGTATTGGCAATTTAACAATGAATC]


>consensus_6242#0 AAATACAACCTCCACTTCGACCAAATGTAACTGAGTTATTAGATACAAAAACTGTGAAGG AGGTTCAGAATAATGGGACTGATGGTGCCGGTGATAGTTTCCTTTTGGATGATGTTGCTA TAACTAATAATCATTGTCGGTCAGATATTGCGCAAATCAGTAACAACAGTCTTAGTAACA ATTCTGAAAATGAAATTCAACACGAAAAACTCATTAAAACTGTGCATCGTTTAGCGACTA CAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTG GTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTA ATGTTGCTACTAAACTGGTTGCTGGTTCATCAAAGTCGTCTATACCAATCATTCATTCCA CTGCTGGTTCACCAGATTTATCAACTAATAGTACTAGTAGTACTACTAGTAGTTCACATT TTCTTGGTCAAGATGAAGAACTTTTATTGGATATACTTGAAGAGGGTGTGGAATTACACT TTGTCACAAGGCATCTATTCCTATACGATCATGCTTTGATTATCGCCGATGCAGCTATGG AATTAACCACCACCACTACACTACTTGAAAATAGCAGTAGCTTGAATGGAAACAAATCGC TGAATGATAATAGTGATAATCATAAACCTAAATTACAGTGTCGATTTCGACACGCATTAC CTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTG ACCAATTGTTATGGTTCTGTCTATCAGAAAGAACACGCTATTTAGGTTCTCCATTTGAAT CGTCAGTTGCTGCTGCATCACCGCCTCAATCACATTTATGTTATATTATAGCGCCAAAAT CTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTAGAC GTTTATCTCAAGCATATCTTATGAATAATGTATCTTTTGGTTCTGGTGACCCTAATAGCG GATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTT ATCCTAGTGGTGTGTTATTTAACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATA AAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAG ATCAATTATCTTCTGGTATTGGCAATTTAACAATGAATC



consensusID : consensus_6242#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 545
fasta sequence
                              [ACTAGTGATTGGCCGGCCCGGTCTGGGCGCCTCAATCACATTTATGTTATATTATCGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTACACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTGGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTGACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAACTATCTTCTGGTATTGGCAATTTAACAATGAATCAATCAATGCTGCCTACATGTTCCACATCATCGTTACAACAATCAAGCACATTGTTACAATCCACAAATTCACATATTGTATGATGTAAATTTTTTTCTCCAAAGTCATAAGTCTTCCGTTTTCTCCTGTCTGTATAAATA]

[+] EMBL CD200890             [ACTAGTGATTGGCCGGCCCGGTCTGGGCGCCTCAATCACATTTATGTTATATTATCGCGCCAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTACACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTGGGTTCTGGTGACCCTAATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTTATCCTAGTGGTGTGTTATTTGACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAGATCAACTATCTTCTGGTATTGGCAATTTAACAATGAATCAATCAATGCTGCCTACATGTTCCACATCATCGTTACAACAATCAAGCACATTGTTACAATCCACAAATTCACATATTGTATGATGTAAATTTTTTTCTCCAAAGTCATAAGTCTTCCGTTTTCTCCTGTCTGTATAAATA]


>consensus_6242#1 ACTAGTGATTGGCCGGCCCGGTCTGGGCGCCTCAATCACATTTATGTTATATTATCGCGC CAAAATCTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAG CTACACGTTTATCTCAAGCATATCTTATGAATAATGTATCTTTGGGTTCTGGTGACCCTA ATAGCGGATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAA CACTTTATCCTAGTGGTGTGTTATTTGACACAGGTTCTCTAGAACTGCCTAAATCAGGTC GATATAAAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTAT CAGTAGATCAACTATCTTCTGGTATTGGCAATTTAACAATGAATCAATCAATGCTGCCTA CATGTTCCACATCATCGTTACAACAATCAAGCACATTGTTACAATCCACAAATTCACATA TTGTATGATGTAAATTTTTTTCTCCAAAGTCATAAGTCTTCCGTTTTCTCCTGTCTGTAT AAATA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6242#0      AAATACAACCTCCACTTCGACCAAATGTAACTGAGTTATTAGATACAAAAACTGTGAAGG 60
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      AGGTTCAGAATAATGGGACTGATGGTGCCGGTGATAGTTTCCTTTTGGATGATGTTGCTA 120
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      TAACTAATAATCATTGTCGGTCAGATATTGCGCAAATCAGTAACAACAGTCTTAGTAACA 180
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      ATTCTGAAAATGAAATTCAACACGAAAAACTCATTAAAACTGTGCATCGTTTAGCGACTA 240
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      CAATTGCTGAAGTAGCTGGTGACGGTCAAACACAGTTAGGTGATGTTCCACAATTAATTG 300
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      GTCTACCTGGTGGTGCAAGTTTATCTGGTATAGGAAATTTACGTTTACATGGTGGACTTA 360
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      ATGTTGCTACTAAACTGGTTGCTGGTTCATCAAAGTCGTCTATACCAATCATTCATTCCA 420
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      CTGCTGGTTCACCAGATTTATCAACTAATAGTACTAGTAGTACTACTAGTAGTTCACATT 480
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      TTCTTGGTCAAGATGAAGAACTTTTATTGGATATACTTGAAGAGGGTGTGGAATTACACT 540
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      TTGTCACAAGGCATCTATTCCTATACGATCATGCTTTGATTATCGCCGATGCAGCTATGG 600
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      AATTAACCACCACCACTACACTACTTGAAAATAGCAGTAGCTTGAATGGAAACAAATCGC 660
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      TGAATGATAATAGTGATAATCATAAACCTAAATTACAGTGTCGATTTCGACACGCATTAC 720
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      CTATTAATCAGATATCAGTATTGGAGGACGTTGGAGTTGGTGGTTCACGTCCTACTGGTG 780
consensus_6242#1      ------------------------------------------------------------
                                                                                  

consensus_6242#0      ACCAATTGTTATGGTTCTGTCTATCAGAAAGAACACGCTATTTAGGTTCTCCATTTGAAT 840
consensus_6242#1      ------------------------------------------------------ACTAGT 6
                                                                               * *

consensus_6242#0      CGTCAGTTGCTGCTGCATCACCGCCTCAATCACATTTATGTTATATTATAGCGCCAAAAT 900
consensus_6242#1      GATTGGCCGGCCCGGTCTGGGCGCCTCAATCACATTTATGTTATATTATCGCGCCAAAAT 66
                        *  *  *   * *  *   **************************** **********

consensus_6242#0      CTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTAGAC 960
consensus_6242#1      CTCCAGATTCTCGTATTCGTTGGTTAAGTGAACTAACATCGATGATATTAGAAGCTACAC 126
                      ********************************************************* **

consensus_6242#0      GTTTATCTCAAGCATATCTTATGAATAATGTATCTTTTGGTTCTGGTGACCCTAATAGCG 1020
consensus_6242#1      GTTTATCTCAAGCATATCTTATGAATAATGTATCTTTGGGTTCTGGTGACCCTAATAGCG 186
                      ************************************* **********************

consensus_6242#0      GATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTT 1080
consensus_6242#1      GATGTTCTACAACAACAACAACAACAACAGGTCAAATCAAATTACCTGGAGCAACACTTT 246
                      ************************************************************

consensus_6242#0      ATCCTAGTGGTGTGTTATTTAACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATA 1140
consensus_6242#1      ATCCTAGTGGTGTGTTATTTGACACAGGTTCTCTAGAACTGCCTAAATCAGGTCGATATA 306
                      ******************** ***************************************

consensus_6242#0      AAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAG 1200
consensus_6242#1      AAATTGTTAATCAAGATTCACTCAAGAATTCAACACGTTATCATGCTAATGTATCAGTAG 366
                      ************************************************************

consensus_6242#0      ATCAATTATCTTCTGGTATTGGCAATTTAACAATGAATC--------------------- 1239
consensus_6242#1      ATCAACTATCTTCTGGTATTGGCAATTTAACAATGAATCAATCAATGCTGCCTACATGTT 426
                      ***** *********************************                     

consensus_6242#0      ------------------------------------------------------------
consensus_6242#1      CCACATCATCGTTACAACAATCAAGCACATTGTTACAATCCACAAATTCACATATTGTAT 486
                                                                                  

consensus_6242#0      -----------------------------------------------------------
consensus_6242#1      GATGTAAATTTTTTTCTCCAAAGTCATAAGTCTTCCGTTTTCTCCTGTCTGTATAAATA 545
                                                                                 




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)