These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6243#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 769 fasta sequence [AAAGATTTGCATTCATCATTATAATATGTTTCGGTAATCTAAAAAGCCACTGATCTGGTAGAATAAACGACAATTAACTTTTTATTTCGATAATTACTAGTTCAGAAAAGATTTTGTATTTATAGAGCGTAAAAAATAAAGATTCCGAAAATAAACGAAAAATGTCAGCAGGCACTACTGACAAAATCAAATTAAGTCAGTAGAGATAAAAGTAAAATCTTTGGATCAGTTATATCTAAGGCAATCTCATGACACGATGCGACTGAAACATTTTAACTGCATTTCTAAATAAGTACTCAATATTTTTTACTGTACGTCGTTTTAACAATAATCTTTTTACAAGCATGGTAAGCAGAGATGGATAGTGGCTAGCGGTGGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGTAGTC-GCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGTCGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGA] [+] EMBL CD071190 [AAAGATTTGCATTCATCATTATAATATGTTTCGGTAATCTAAAAAGCCACTGATCTGGTAGAATAAACGACAATTAACTTTTTATTTCGATAATTACTAGTTCAGAAAAGATTTTGTATTTATAGAGCGTAAAAAATAAAGATTCCGAAAATAAACGAAAAATGTCAGCAGGCACTACTGACAAAATCAAATTAAGTCAGTAGAGATAAAAGTAAAATCTTTGGATCAGTTATATCTAAGGCAATCTCATGACACGATGCGACTGAAACATTTTAACTGCATTTCTAAATAAGTACTCAATATTTTTTACTGTACGTCGTTTTAACAATAATCTTTTTACAAGCATGGTAAGCAGAGATGGATAGTGGCTAGCGGTGGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGTAGTC GCAGTCGAAGTGTT ] [-] EMBL CD072577 [ GATAGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCG AGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGTCGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGA] consensusID : consensus_6243#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 390 fasta sequence [CGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGTGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTAACTCGGCTTCCGTCTCACCTTCAAATACGCCTTTTGTTGTCTTTCAAAGACCTCATAGTTTCCACACCTTCATTCTCGTGGTGGTTCCGCACTAATGCTTCGGCTTC] [+] EMBL CD141113 [CGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGTGAACGATTGGTTGAGCGTG ] [-] EMBL CD146524 [ ttcacatTCTGTGTTCGCTCCAGTCGAATCGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTAACTCGGCTTCCGTCTCACCTTCAAATACGCCTTTTGTTGTCTTTCAAAGACCTCATAGTTTCCACACCTTCATTCTCGTGGTGGTTCCGCACTAATGCTTCGGCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6243#0 AAAGATTTGCATTCATCATTATAATATGTTTCGGTAATCTAAAAAGCCACTGATCTGGTA 60 consensus_6243#1 ------------------------------------------------------------ consensus_6243#0 GAATAAACGACAATTAACTTTTTATTTCGATAATTACTAGTTCAGAAAAGATTTTGTATT 120 consensus_6243#1 ------------------------------------------------------------ consensus_6243#0 TATAGAGCGTAAAAAATAAAGATTCCGAAAATAAACGAAAAATGTCAGCAGGCACTACTG 180 consensus_6243#1 ------------------------------------------------------------ consensus_6243#0 ACAAAATCAAATTAAGTCAGTAGAGATAAAAGTAAAATCTTTGGATCAGTTATATCTAAG 240 consensus_6243#1 ------------------------------------------------------------ consensus_6243#0 GCAATCTCATGACACGATGCGACTGAAACATTTTAACTGCATTTCTAAATAAGTACTCAA 300 consensus_6243#1 -----CGTATTTGAAGGTGAGACGGAAGC--CGAGTCGGCAGTCG-----AAGTGTTCGG 48 * ** * * ** *** *** * * *** * **** ** consensus_6243#0 T-ATTTTTTACTGTACGTCGTTTTAACAATAATCTTTTTACAAGCATGGTAAGCAGAGAT 359 consensus_6243#1 TGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATC 108 * * ** * * ** * * * * * * * * ** consensus_6243#0 GGA-TAGTGGCTAGCGGTGGAATCGG--AACGTGTGTCTGTGTTCGCTCCAGTCGAATTG 416 consensus_6243#1 GGAACACAAGTTAGAACGGGAAGTGGTCGAGAGGAGTCTGTGTTCGCTCCAGTCGAATTG 168 *** * * *** **** ** * * ************************* consensus_6243#0 GAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGT 476 consensus_6243#1 GAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGTGAACGATTGGTTGAGCGT 228 ***************************************** ****************** consensus_6243#0 GTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACG 536 consensus_6243#1 GTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTAACTCG 288 ****************************************************** * ** consensus_6243#0 GAAGCCGTAGTCGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGTCGCA 596 consensus_6243#1 GCTTCCGTC-TCACCTTC-AAATACGCCTTTTGTTGTCTTTCAAAGACCTCATAGTTTCC 346 * **** ** * ** ** * * * * * *** ** * consensus_6243#0 GAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAA 656 consensus_6243#1 ACACCTTCATT-----CTCGTGGTGGTTCCGCACTAATGCTTCGGCTTC----------- 390 * * * * * * ** ** * ** ** * * * consensus_6243#0 TTGGAGTCTGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAA 716 consensus_6243#1 ------------------------------------------------------------ consensus_6243#0 GCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGA 769 consensus_6243#1 ----------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||