These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 526 fasta sequence [CCACCACCACCACCACAAGTTGAAATGAGAAAAAATGATCTAGAATCAGAAGTTAGACGAAGGTCATTCAGGAAACGGAAACAAACGAAATTTTTTCAAATAGACCCCAAAGTGAAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAGACAGGATGACAGGTGTTATG---TATATATATATTTCCCTATCCTTATTATAGATGGACACTTATTGAGACTTATTGACTGTTCCATGTGTCGGATCTTGGTGTGAAATATATTGACGTTATAGTCAGGCTAATATTGTGTTCTTGATCTGAGTTCTGTTGAAGTCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGATATTCGTCTAAGATAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACCAGAACCCCCTAAAGTTATAACCAGCATCCTCTCTCTCTCTCTACGTTTATAACAATTGGCGACGGCA] [+] EMBL CD090057 [CCACCACCACCACCACAAGTTGAAATGAGAAAAAATGATCTAGAATCAGAAGTTAGACGAAGGTCATTCAGGAAACGGAAACAAGCGAAATTTTTTCAAATAGACCCCAAAGTGAAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAGACAGGATGACAGGTGTTATG TATATATATATTTCCCTATCCTTATTATAGATTGACACTTATTGAGACTTATTGACTGTTCCATGTGTCGGATTTTGGTGTGAAATATATTGACGTTATAGTCAGGCTAATATTGTGTTCTTGATCTGAGTTCTGTTGAAGTCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGATATTCGTCTAAGATAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACCAGAACCCCCTAAAGTTATAACCAGCATCCTCTCTCTCTCTCTACGTTTATAACAATTGGCGACGGCA] [+] EMBL CD146790 [ AAACGAAATTTTTTCAAATAGACCCCAAAGTGAAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGTCAATGATTGGTTGTCTCGATGAGTCAGACATTAGAGGGGATGACAGGTGTTATGTGTTATATATATATTTCCCTATCCTTATTATGTATGG ACTTATTGAGACTTATTGACTGTTCCATGTGTCGGGTCTTGGTGTGAAATATATTGACGTTATAGTCAGGCTAATATTGTGTTCTTGATCTGAGTTCTGTTGAAGTCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGATATTCGTCTAAGATAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACCAGAAACCCCTAAAGTT ] [-] EMBL CD086285 [ AACGAAATTTTTTCAAATAGACCCCAAAGTGAAATCATACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCTTGATGAGTCAGACATTAGACAGGATGACAGGTGTTATG TATATATATATTTCCCTATCCTTATTATAGATGGACACTTATTGAGACTTATTGACTGTTCCATGTGTCGGATCTTGGTGTGAAATATATTGACGTTATAGTCAGGCTAATATTGTGTTCTTGATCTGAGTTCTGTTGAAGTCCTGTAGAATGGACACTGGGTGGGAATCTAGTGTAGATATTCGTCTAAGATAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACCAGAACCCCCTAAAGTTATAACCAGCATCCT ] consensusID : consensus_6245#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [GGACTGTTATGATTGACTGTTCCTGTGTCGGATTTTGGTGTGGAAATATATTGACGTTATAGTCAGGCTAATCTTGTGTTCTTGATCTGAGTTGTGTTGAAGTCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGAAATTCGTCTAAGGTAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACTAGAAACCTCTAAAGTTATAACCAGCATCCTTCCACGTTTATAACAATTAGCGACGGCATACTTACGTTTATAACAGAAAGTCACCGTCAGATAGATTGTTAATAATAATAATAATCTGCTGCGTAAATTTGCGAAGTTGATGATTTGATAACTTACGCCTTTTAACTCTCGTGGAGCGTAGACTGAAGACCACGATTCTCCAACTGAGCGACCTGGGCACTACTTTCCAGTTGTTTTGAAGTGCTGTTCATCCTTTTGATGACT] [+] EMBL CD068671 [GGACTGTTATGATTGACTGTTCCTGTGTCGGATTTTGGTGTGGAAATATATTGACGTTATAGTCAGGCTAATCTTGTGTTCTTGATCTGAGTTGTGTTGAAGTCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGAAATTCGTCTAAGGTAAATTAACGTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACTAGAAACCTCTAAAGTTATAACCAGCATCCTTCCACGTTTATAACAATTAGCGACGGCATACTTACGTTTATAACAGAAAGTCACCGTCAGATAGATTGTTAATAATAATAATAATCTGCTGCGTAAATTTGCGAAGTTGATGATTTGATAACTTACGCCTTTTAACTCTCGTGGAGCGTAGACTGAAGACCACGATTCTCCAACTGAGCGACCTGGGCACTACTTTCCAGTTGTTTTGAAGTGCTGTTCATCCTTTTGATGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6245#0 CCACCACCACCACCACAAGTTGAAATGAGAAAAAATGATCTAGAATCAGAAGTTAGACGA 60 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 AGGTCATTCAGGAAACGGAAACAAACGAAATTTTTTCAAATAGACCCCAAAGTGAAATCA 120 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 TACGATCGAACTTCGCGAGGGAGGTGATGTGTGGGCGAGAATGATAATGATTGGTTGTCT 180 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 TGATGAGTCAGACATTAGACAGGATGACAGGTGTTATGTATATATATATTTCCCTATCCT 240 consensus_6245#1 ------------------------------------------------------------ consensus_6245#0 TATTATAGATGGACACTTATTGAGACTTATTGACTGTTCCATGTGTCGGATCTTGGTGTG 300 consensus_6245#1 ----------GGACTGTTATG-------ATTGACTGTTCC-TGTGTCGGATTTTGGTGTG 42 **** **** ************ ********** ******** consensus_6245#0 -AAATATATTGACGTTATAGTCAGGCTAATATTGTGTTCTTGATCTGAGTTCTGTTGAAG 359 consensus_6245#1 GAAATATATTGACGTTATAGTCAGGCTAATCTTGTGTTCTTGATCTGAGTTGTGTTGAAG 102 ***************************** ******************** ******** consensus_6245#0 TCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGATATTCGTCTAAGATAAATTAAC 419 consensus_6245#1 TCCTGTAGAATAGACACTGGGTGGGAATCTAGTGTAGAAATTCGTCTAAGGTAAATTAAC 162 ************************************** *********** ********* consensus_6245#0 GTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACCAGAACCCCCTAAAGTTATAA 479 consensus_6245#1 GTCCCACATACGTGTAAGAAGTAAAAGGACTGTTATAACTAGAAACCTCTAAAGTTATAA 222 *************************************** **** ** ************ consensus_6245#0 CCAGCATCCTCTCTCTCTCTCTACGTTTATAACAATTGGCGACGGCA------------- 526 consensus_6245#1 CCAGCATCCT---------TCCACGTTTATAACAATTAGCGACGGCATACTTACGTTTAT 273 ********** ** *************** ********* consensus_6245#0 ------------------------------------------------------------ consensus_6245#1 AACAGAAAGTCACCGTCAGATAGATTGTTAATAATAATAATAATCTGCTGCGTAAATTTG 333 consensus_6245#0 ------------------------------------------------------------ consensus_6245#1 CGAAGTTGATGATTTGATAACTTACGCCTTTTAACTCTCGTGGAGCGTAGACTGAAGACC 393 consensus_6245#0 ------------------------------------------------------------ consensus_6245#1 ACGATTCTCCAACTGAGCGACCTGGGCACTACTTTCCAGTTGTTTTGAAGTGCTGTTCAT 453 consensus_6245#0 ------------- consensus_6245#1 CCTTTTGATGACT 466 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||