cluster # 625

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Schistosoma mansoni
cluster # 625 cluster # 625 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_625#0 length = 285 sequences # 1

consensus_625#1 length = 210 sequences # 1

consensusID : consensus_625#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 285
fasta sequence

                              [ATATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCACAGATCTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTACTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCATTGCACGCATTTGTTGAAGTTTGTTTATTATCGGAATGCGGTTTCATCTGAGGATCAGTGAATTTCTTTAGTAAACCAATGTCAACGTCATTACGAAATGGCGACG]

[+] EMBL CD190960             [ATATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCACAGATCTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTACTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCATTGCACGCATTTGTTGAAGTTTGTTTATTATCGGAATGCGGTTTCATCTGAGGATCAGTGAATTTCTTTAGTAAACCAATGTCAACGTCATTACGAAATGGCGACG]




>consensus_625#0
ATATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCACAGAT
CTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTA
CTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCAT
TGCACGCATTTGTTGAAGTTTGTTTATTATCGGAATGCGGTTTCATCTGAGGATCAGTGA
ATTTCTTTAGTAAACCAATGTCAACGTCATTACGAAATGGCGACG

consensusID : consensus_625#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 210
fasta sequence

                              [TATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCATAGATCTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTACTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCATTGCACGCATTTGTTGAAGTCTACACAGTAAT]

[-] EMBL CD184495             [TATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCATAGATCTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTACTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCATTGCACGCATTTGTTGAAGTCTACACAGTAAT]




>consensus_625#1
TATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCATAGATC
TAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTAC
TAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCATT
GCACGCATTTGTTGAAGTCTACACAGTAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_625#0      ATATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCACAGAT 60
consensus_625#1      -TATGGTTTTTTTATATTAGGATTTGACAAAATTAGATTTTAACAATTTATCCCATAGAT 59
                      ****************************************************** ****

consensus_625#0      CTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTA 120
consensus_625#1      CTAATAAAGACTTGAGTGTATCCACCCATTGCCGAATTCCCATAGGTGTAGTAGTTTCTA 119
                     ************************************************************

consensus_625#0      CTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCAT 180
consensus_625#1      CTAATTGGGACATAGACCAATGGATTTTGTCACGTAGTTCTGTTAGTATACTAATCTCAT 179
                     ************************************************************

consensus_625#0      TGCACGCATTTGTTGAAGTTTGTTTATTATCGGAATGCGGTTTCATCTGAGGATCAGTGA 240
consensus_625#1      TGCACGCATTTGTTGAAGTCTACACAGTAAT----------------------------- 210
                     ******************* *    * **                               

consensus_625#0      ATTTCTTTAGTAAACCAATGTCAACGTCATTACGAAATGGCGACG 285
consensus_625#1      ---------------------------------------------