cluster # 6256

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Schistosoma mansoni
cluster # 6256 cluster # 6256 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6256#0 length = 486 sequences # 1
consensus_6256#1 length = 382 sequences # 1

consensus_6256#2 length = 293 sequences # 1
consensus_6256#3 length = 293 sequences # 1

consensusID : consensus_6256#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 486
fasta sequence

                              [TCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAATCCTGTGTGACCAGAAACGAGATCGATTCAAAGATTAGTGATTATGTTAAACGAGCTGAATCAATTACATTAACAACAGATTTAGCACCATTTAATGCTTTTCATATAGAGAATATGCAATTGAATAAAATGATTTCAACATTTGGTCGACTTACATCTAGAT]

[+] EMBL AI067440             [TCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAATCCTGTGTGACCAGAAACGAGATCGATTCAAAGATTAGTGATTATGTTAAACGAGCTGAATCAATTACATTAACAACAGATTTAGCACCATTTAATGCTTTTCATATAGAGAATATGCAATTGAATAAAATGATTTCAACATTTGGTCGACTTACATCTAGAT]




>consensus_6256#0
TCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGTTTTAGGCTTAATT
TAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGAC
TTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAG
CAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAAT
TACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAAT
CTTTACGAAATGTTTTACTACAATCCTGTGTGACCAGAAACGAGATCGATTCAAAGATTA
GTGATTATGTTAAACGAGCTGAATCAATTACATTAACAACAGATTTAGCACCATTTAATG
CTTTTCATATAGAGAATATGCAATTGAATAAAATGATTTCAACATTTGGTCGACTTACAT
CTAGAT

consensusID : consensus_6256#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 382
fasta sequence

                              [ATGTTGATCCTAGGAAGCGCGCTCTATTCTTGCTGCGCTTCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAGTGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAAT]

[-] EMBL CD189929             [ATGTTGATCCTAGGAAGCGCGCTCTATTCTTGCTGCGCTTCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAGTGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAAT]




>consensus_6256#1
ATGTTGATCCTAGGAAGCGCGCTCTATTCTTGCTGCGCTTCCTCGGACTTGTTTGTTACT
GTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTA
AAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTT
GTTAATTATAAACCATTACTTGATCAAAATGTTCTAAGTGCTGAATTTGAAATAAGAGCA
AATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTA
CATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCT
TTACGAAATGTTTTACTACAAT

consensusID : consensus_6256#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [TCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAA]

[+] EMBL CD189918             [TCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAA]




>consensus_6256#2
TCCTCGGACTTGTTTGTTACTGTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTT
GCCATTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTG
GATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATAATTATTAA
GTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATAC
TCATTGAAAGTAATATACAAACAATTGAATCTTTACGAAATGTTTTACTACAA

consensusID : consensus_6256#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [GCGCTTCCTCGGACTTTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAGACAATTGAATCTTTACGAAATGTTTTACTACAA]

[+] EMBL CD189731             [GCGCTTCCTCGGACTTTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAGACAATTGAATCTTTACGAAATGTTTTACTACAA]




>consensus_6256#3
GCGCTTCCTCGGACTTTTTTAGGCTTAATTTAAAAATGGAATCAAGAATAAAAGATGCTG
TTGAACGATTGGATCATCTTTATCAACGACTTGTTAATTATAAACCATTACTTGATCAAA
ATGTTCTAAATGCTGAATTTGAAATAAGAGCAAATTTTAAAAATTTAATAGAATTATTAA
GTAAACGACAATCCAATCTACTTATTCAATTACATAATATTGCTAAAGAGAAATCTATAC
TCATTGAAAGTAATATACAGACAATTGAATCTTTACGAAATGTTTTACTACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6256#0      ---------------------------------------TCCTCGGACTTGTTTGTTACT 21
consensus_6256#3      ------------------------------------------------------------
consensus_6256#1      ATGTTGATCCTAGGAAGCGCGCTCTATTCTTGCTGCGCTTCCTCGGACTTGTTTGTTACT 60
consensus_6256#2      ---------------------------------------TCCTCGGACTTGTTTGTTACT 21
                                                                                  

consensus_6256#0      GTATTTTCCCTTAAGTGCTATAAC-------------------GTTTTAGGCTTAATTTA 62
consensus_6256#3      --GCGCTTCCTCGGAC-------T-------------------TTTTTAGGCTTAATTTA 32
consensus_6256#1      GTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTA 120
consensus_6256#2      GTATTTTCCCTTAAGTGCTATAACGGTTGCTATATTTTTGCCATTTTTAGGCTTAATTTA 81
                            * ***                                 ****************

consensus_6256#0      AAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTT 122
consensus_6256#3      AAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTT 92
consensus_6256#1      AAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTT 180
consensus_6256#2      AAAATGGAATCAAGAATAAAAGATGCTGTTGAACGATTGGATCATCTTTATCAACGACTT 141
                      ************************************************************

consensus_6256#0      GTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCA 182
consensus_6256#3      GTTAATTATAAACCATTACTTGATCAAAATGTTCTAAATGCTGAATTTGAAATAAGAGCA 152
consensus_6256#1      GTTAATTATAAACCATTACTTGATCAAAATGTTCTAAGTGCTGAATTTGAAATAAGAGCA 240
consensus_6256#2      GTTAATTATAAACCATTACTTGATCAAAAT------------------------------ 171
                      ******************************                              

consensus_6256#0      AATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTA 242
consensus_6256#3      AATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTA 212
consensus_6256#1      AATTTTAAAAATTTAATAGAATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTA 300
consensus_6256#2      -------------------AATTATTAAGTAAACGACAATCCAATCTACTTATTCAATTA 212
                                         *****************************************

consensus_6256#0      CATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCT 302
consensus_6256#3      CATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAGACAATTGAATCT 272
consensus_6256#1      CATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCT 360
consensus_6256#2      CATAATATTGCTAAAGAGAAATCTATACTCATTGAAAGTAATATACAAACAATTGAATCT 272
                      *********************************************** ************

consensus_6256#0      TTACGAAATGTTTTACTACAATCCTGTGTGACCAGAAACGAGATCGATTCAAAGATTAGT 362
consensus_6256#3      TTACGAAATGTTTTACTACAA--------------------------------------- 293
consensus_6256#1      TTACGAAATGTTTTACTACAAT-------------------------------------- 382
consensus_6256#2      TTACGAAATGTTTTACTACAA--------------------------------------- 293
                      *********************                                       

consensus_6256#0      GATTATGTTAAACGAGCTGAATCAATTACATTAACAACAGATTTAGCACCATTTAATGCT 422
consensus_6256#3      ------------------------------------------------------------
consensus_6256#1      ------------------------------------------------------------
consensus_6256#2      ------------------------------------------------------------
                                                                                  

consensus_6256#0      TTTCATATAGAGAATATGCAATTGAATAAAATGATTTCAACATTTGGTCGACTTACATCT 482
consensus_6256#3      ------------------------------------------------------------
consensus_6256#1      ------------------------------------------------------------
consensus_6256#2      ------------------------------------------------------------
                                                                                  

consensus_6256#0      AGAT 486
consensus_6256#3      ----
consensus_6256#1      ----
consensus_6256#2      ----