cluster # 6263

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Schistosoma mansoni
cluster # 6263 cluster # 6263 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6263#0 length = 453 sequences # 1

consensus_6263#1 length = 281 sequences # 2
consensus_6263#2 length = 280 sequences # 1

consensusID : consensus_6263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 453
fasta sequence

                              [ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTAAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACCGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTTCATAATTTCTTACTAGAAGAAAAAAGAAGCGATGGTAATGAGTCAGGAAAATTGAAAAGAAATGGAAGTCTTTGATCTCTTCTAATTTATTAATGACACCATGCCAGTTTTAAACTGGTATGAATGATGGTGTTGAATGAATTTTCACCAATTAAACCTGACCGCGCTTTTCTCTTACAACCTTGAACGTCTCGGAGAACG]

[+] EMBL CD185880             [ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTAAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACCGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTTCATAATTTCTTACTAGAAGAAAAAAGAAGCGATGGTAATGAGTCAGGAAAATTGAAAAGAAATGGAAGTCTTTGATCTCTTCTAATTTATTAATGACACCATGCCAGTTTTAAACTGGTATGAATGATGGTGTTGAATGAATTTTCACCAATTAAACCTGACCGCGCTTTTCTCTTACAACCTTGAACGTCTCGGAGAACG]




>consensus_6263#0
ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGA
TGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGC
TATTAAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAAT
ATATCAGTAAATGCTGGTAGGACCGATGAAGCACGTTGAACTAATTCAGTAGCAACTGAT
CTTTTCTTTTTTCATAATTTCTTACTAGAAGAAAAAAGAAGCGATGGTAATGAGTCAGGA
AAATTGAAAAGAAATGGAAGTCTTTGATCTCTTCTAATTTATTAATGACACCATGCCAGT
TTTAAACTGGTATGAATGATGGTGTTGAATGAATTTTCACCAATTAAACCTGACCGCGCT
TTTCTCTTACAACCTTGAACGTCTCGGAGAACG

consensusID : consensus_6263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 281
fasta sequence

                              [ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGACTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTCATAATTTCTTAAAACCTGACCGCGCTTT]

[+] EMBL CD141989             [ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGACTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTCATAATTTCTTAAAACCTGACCGCGCTT ]
[-] EMBL CD197991             [ CAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTCATAATTTCTTAAAACCTGACCGCGCTTT]




>consensus_6263#1
ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGACTTTTTATTTGA
TGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGC
TATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAA
TATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGA
TCTTTTCTTTTTCATAATTTCTTAAAACCTGACCGCGCTTT

consensusID : consensus_6263#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 280
fasta sequence

                              [CAAATAAGTAGTTATTCTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTCATAATTTCTTAAAACGGGCCAACAGTTT]

[-] EMBL CD197985             [CAAATAAGTAGTTATTCTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGATGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCTATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAATATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGATCTTTTCTTTTTCATAATTTCTTAAAACGGGCCAACAGTTT]




>consensus_6263#2
CAAATAAGTAGTTATTCTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGAT
GATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGCT
ATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAAT
ATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGAT
CTTTTCTTTTTCATAATTTCTTAAAACGGGCCAACAGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6263#1      ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGACTTTTTATTTGA 60
consensus_6263#2      -CAAATAAGTAGTTATTCTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGA 59
consensus_6263#0      ACAAATAAGTAGTTATTTTAAGCGATTGGTTGAATAGTGTCGTTTTGATTTTTTATTTGA 60
                       **************** ****************************** ***********

consensus_6263#1      TGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGC 120
consensus_6263#2      TGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGC 119
consensus_6263#0      TGATTTTAAATCATCAGCATCTTTAATAGTGACATCAAAATACCATGCTATACTAAATGC 120
                      ************************************************************

consensus_6263#1      TATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAA 180
consensus_6263#2      TATTATAAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAA 179
consensus_6263#0      TATTA-AAAAGATAAAATAACAAGACAAGTGAAAAATATATAAAATGTTTCTTCGTCAAA 179
                      ***** ******************************************************

consensus_6263#1      TATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGA 240
consensus_6263#2      TATATCAGTAAATGCTGGTAGGACTGATGAAGCACGTTGAACTAATTCAGTAGCAACTGA 239
consensus_6263#0      TATATCAGTAAATGCTGGTAGGACCGATGAAGCACGTTGAACTAATTCAGTAGCAACTGA 239
                      ************************ ***********************************

consensus_6263#1      TCTTTTCTTTTT-CATAATTTCTTAAAACCTGACCGCGCTTT------------------ 281
consensus_6263#2      TCTTTTCTTTTT-CATAATTTCTTAAAACGGGCCAACAGTTT------------------ 280
consensus_6263#0      TCTTTTCTTTTTTCATAATTTCTTACTAGAAGAAAAAAGAAGCGATGGTAATGAGTCAGG 299
                      ************ ************  *   *                            

consensus_6263#1      ------------------------------------------------------------
consensus_6263#2      ------------------------------------------------------------
consensus_6263#0      AAAATTGAAAAGAAATGGAAGTCTTTGATCTCTTCTAATTTATTAATGACACCATGCCAG 359
                                                                                  

consensus_6263#1      ------------------------------------------------------------
consensus_6263#2      ------------------------------------------------------------
consensus_6263#0      TTTTAAACTGGTATGAATGATGGTGTTGAATGAATTTTCACCAATTAAACCTGACCGCGC 419
                                                                                  

consensus_6263#1      ----------------------------------
consensus_6263#2      ----------------------------------
consensus_6263#0      TTTTCTCTTACAACCTTGAACGTCTCGGAGAACG 453