cluster # 6271

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Schistosoma mansoni
cluster # 6271 cluster # 6271 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6271#0 length = 630 sequences # 2

consensus_6271#1 length = 476 sequences # 2

consensusID : consensus_6271#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 630
fasta sequence

                              [CTGACGCCTTCACGGAAACTTACACAATTTAAATGCAATCGAAGTAATGAATGTTTATTAATGGAAGCCAGAAAATCTAAAAAGCAAACAACTGCAACACTTTTAGTCATTAATTCTTGGAAGGACATATCATAAATTCGTGCATCTGGTTGTAAATGATAGGCTAATGCACGTCCGGGTTTTTCAGCTACACCTTCTTGAATTTGTCTTCGGCGAATTAAACATATTTTTCTGACATAATCGAGGCTTCCAAGTTGCGCTTTAATAAGAGCATCATCATCGCCACCTGTGTCGTGACCCCGAAGTTTATCCATGAAACTATTTAGCTGACGGATAACAACATCTATCTCTTCGATGCTTTCAGACATGCGTAGTGCTTGACAAAAATATTCACTTGTATAGGCACTATCTGATGCAAACCAAGCTATGGCTCTGTTAACGAAATCGGGATCCGATAACAAATTGATCATTGGTATCAGAACAGAATTAACCAGCAACTCCCGGGCTATATATCGTATACCAGGCACACCATATTCCTCAGTAGGGGTAACGAAGAATAAAAACATATCACTTAGCGAACGGAGATGGTCTTTTTCCCGATCTCCAGAATTACAGATTTCTTCGTGACAT]

[+] EMBL CD116794             [CTGACGCCTTCACGGAAACTTACACAATTTAAATGCAATCGAAGTAATGAATGTTTATTAATGGAAGCCAGAAAATCTAAAAAGCAAACAACTGCAACACTTTTAGTCATTAATTCTTGGAAGGACATATCATAAATTCGTGCATCTGGTTGTAAATGATAGGCTAATGCACGTCCGGGTTTTTCAGCTACACCTTCTTGAATTTGTCTTCGGCGAATTAAACATATTTTTCTGACATAATCGAGGCTTCCAAGTTGCGCTTTAATAAGAGCATCATCATCGCCACCTGTGTCGTGACCCCGAAGTTTATCCATGAAACTATTTAGCTGACGGATAACAACATCTATCTCTTCGATGCTTTCAGACATGCGTAGTGCTTGACAAAAATATTCACTTG                                                                                                                                                                                                                                         ]
[+] EMBL CD122350             [                                                                                                                                     AAATTCGTGCATCTGGTTGTAAATGATAGGCTAATGCACGTCCGGGTTTTTCAGCTACACCTTCTTGAATTTGTCTTCGACGAATTAAACATATTTTTCTGACATAATCGAGGCTTCCAAGTTGCGCTTTAATAAGAGCATCATCATCGCCACCTGTGTCGTGACCCCGAAGTTTATCCATGAAACTATTTAGCTGACGGATAACAACATCTATCTCTTCGATGCTTTCAGACATGCGTAGTGCTTGACAAAAATATTCACTTGTATAGGCACTATCTGATGCAAACCAAGCTATGGCTCTGTTAACGAAATCGGGATCCGATAACAAATTGATCATTGGTATCAGAACAGAATTAACCAGCAACTCCCGGGCTATATATCGTATACCAGGCACACCATATTCCTCAGTAGGGGTAACGAAGAATAAAAACATATCACTTAGCGAACGGAGATGGTCTTTTTCCCGATCTCCAGAATTACAGATTTCTTCGTGACAT]




>consensus_6271#0
CTGACGCCTTCACGGAAACTTACACAATTTAAATGCAATCGAAGTAATGAATGTTTATTA
ATGGAAGCCAGAAAATCTAAAAAGCAAACAACTGCAACACTTTTAGTCATTAATTCTTGG
AAGGACATATCATAAATTCGTGCATCTGGTTGTAAATGATAGGCTAATGCACGTCCGGGT
TTTTCAGCTACACCTTCTTGAATTTGTCTTCGGCGAATTAAACATATTTTTCTGACATAA
TCGAGGCTTCCAAGTTGCGCTTTAATAAGAGCATCATCATCGCCACCTGTGTCGTGACCC
CGAAGTTTATCCATGAAACTATTTAGCTGACGGATAACAACATCTATCTCTTCGATGCTT
TCAGACATGCGTAGTGCTTGACAAAAATATTCACTTGTATAGGCACTATCTGATGCAAAC
CAAGCTATGGCTCTGTTAACGAAATCGGGATCCGATAACAAATTGATCATTGGTATCAGA
ACAGAATTAACCAGCAACTCCCGGGCTATATATCGTATACCAGGCACACCATATTCCTCA
GTAGGGGTAACGAAGAATAAAAACATATCACTTAGCGAACGGAGATGGTCTTTTTCCCGA
TCTCCAGAATTACAGATTTCTTCGTGACAT

consensusID : consensus_6271#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 476
fasta sequence

                              [CAGCTACACCTTCTTGAATTTGTCTTCGACGAATTAAACATATTTTTCTGACATAATCGAGGCTTCCAAGTTGCGCTTTAATAAGAGCATCATCATCGCCACCTGTGTCGTGACCCCGAAGTTTATCCATGAAACTATTTAGCTGACGGATAACAACATCTATCTCTTCGATGCTTTCAGACATGCGTAGTGCTTGACAAAAATATTCACTTGTATAGGCACTATCTGATGCAAACCAAGCTATGGCTCTGTTAACGAAATCGGGATCCGATAACAAATTGATCATTGGTATCAGAACAGAATTAACCAGCAACTCCTACAACGTTAGGAAAGTAAGTAACTTACCCGGGCTATATATCGTATACCAGGCACACCATATTCCTCAGTAGGGGTAACGAAGAATAAAAACATATCACTTAGCAAACGGAGATGGTCTTTTTCCCGATCTCCAGAATTACAGATTTCTTCGTGACATA]

[-] EMBL CD178916             [CAGCTACACCTTCTTGAATTTGTCTTCGACGAATTAAACATATTTTTCTGACATAATCGAGGCTTCCAAGTTGCGCTTTAATAAGAGCATCATCATCGCCACCTGTGTCGTGACCCCGAAGTTTATCCATGAAACTATTTAGCTGACGGATAACAACATCTATCTCTTCGATGCTTTCAGACATGCGTAGTGCTTGACAAAAATATTCACTTGTATAGGCACTATCTGATGCAAACCAAGCTATGGCTCTGTTAACGAAATCGGGATCCGATAACAAATTGATCATTGGTATCAGAACAGAATTAACCAGCAACTCCTACAACGTTAGGAAAGTAAGTAACTTACCCGGGCTATATATCGTATACCAGGCACACCATATTCCTCAGTAGGGGTAACGAAGAATAAAAACATATCACTTAGCAAACGGAGATGGTCTTTTTCCCGATCTCCAGAATTACAGATTTCTTCGTGACATA]
[+] EMBL CD064114             [                                                                                     AGCATCATCATCGCCACCTGTGTCGTGACTCCGAAGACCCTGCATGAAACTATTTAGCTGACGGATAACAACATCTATCTCTTCGATGCTTTCAGACATGCGTAGTGCTTGACAAAAATATTCACTTGTAT                                                                                                                                                                                                                                                                    ]




>consensus_6271#1
CAGCTACACCTTCTTGAATTTGTCTTCGACGAATTAAACATATTTTTCTGACATAATCGA
GGCTTCCAAGTTGCGCTTTAATAAGAGCATCATCATCGCCACCTGTGTCGTGACCCCGAA
GTTTATCCATGAAACTATTTAGCTGACGGATAACAACATCTATCTCTTCGATGCTTTCAG
ACATGCGTAGTGCTTGACAAAAATATTCACTTGTATAGGCACTATCTGATGCAAACCAAG
CTATGGCTCTGTTAACGAAATCGGGATCCGATAACAAATTGATCATTGGTATCAGAACAG
AATTAACCAGCAACTCCTACAACGTTAGGAAAGTAAGTAACTTACCCGGGCTATATATCG
TATACCAGGCACACCATATTCCTCAGTAGGGGTAACGAAGAATAAAAACATATCACTTAG
CAAACGGAGATGGTCTTTTTCCCGATCTCCAGAATTACAGATTTCTTCGTGACATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6271#0      CTGACGCCTTCACGGAAACTTACACAATTTAAATGCAATCGAAGTAATGAATGTTTATTA 60
consensus_6271#1      ------------------------------------------------------------
                                                                                  

consensus_6271#0      ATGGAAGCCAGAAAATCTAAAAAGCAAACAACTGCAACACTTTTAGTCATTAATTCTTGG 120
consensus_6271#1      ------------------------------------------------------------
                                                                                  

consensus_6271#0      AAGGACATATCATAAATTCGTGCATCTGGTTGTAAATGATAGGCTAATGCACGTCCGGGT 180
consensus_6271#1      ------------------------------------------------------------
                                                                                  

consensus_6271#0      TTTTCAGCTACACCTTCTTGAATTTGTCTTCGGCGAATTAAACATATTTTTCTGACATAA 240
consensus_6271#1      ----CAGCTACACCTTCTTGAATTTGTCTTCGACGAATTAAACATATTTTTCTGACATAA 56
                          **************************** ***************************

consensus_6271#0      TCGAGGCTTCCAAGTTGCGCTTTAATAAGAGCATCATCATCGCCACCTGTGTCGTGACCC 300
consensus_6271#1      TCGAGGCTTCCAAGTTGCGCTTTAATAAGAGCATCATCATCGCCACCTGTGTCGTGACCC 116
                      ************************************************************

consensus_6271#0      CGAAGTTTATCCATGAAACTATTTAGCTGACGGATAACAACATCTATCTCTTCGATGCTT 360
consensus_6271#1      CGAAGTTTATCCATGAAACTATTTAGCTGACGGATAACAACATCTATCTCTTCGATGCTT 176
                      ************************************************************

consensus_6271#0      TCAGACATGCGTAGTGCTTGACAAAAATATTCACTTGTATAGGCACTATCTGATGCAAAC 420
consensus_6271#1      TCAGACATGCGTAGTGCTTGACAAAAATATTCACTTGTATAGGCACTATCTGATGCAAAC 236
                      ************************************************************

consensus_6271#0      CAAGCTATGGCTCTGTTAACGAAATCGGGATCCGATAACAAATTGATCATTGGTATCAGA 480
consensus_6271#1      CAAGCTATGGCTCTGTTAACGAAATCGGGATCCGATAACAAATTGATCATTGGTATCAGA 296
                      ************************************************************

consensus_6271#0      ACAGAATTAACCAGCAACTCC-----------------------------CGGGCTATAT 511
consensus_6271#1      ACAGAATTAACCAGCAACTCCTACAACGTTAGGAAAGTAAGTAACTTACCCGGGCTATAT 356
                      *********************                             **********

consensus_6271#0      ATCGTATACCAGGCACACCATATTCCTCAGTAGGGGTAACGAAGAATAAAAACATATCAC 571
consensus_6271#1      ATCGTATACCAGGCACACCATATTCCTCAGTAGGGGTAACGAAGAATAAAAACATATCAC 416
                      ************************************************************

consensus_6271#0      TTAGCGAACGGAGATGGTCTTTTTCCCGATCTCCAGAATTACAGATTTCTTCGTGACAT- 630
consensus_6271#1      TTAGCAAACGGAGATGGTCTTTTTCCCGATCTCCAGAATTACAGATTTCTTCGTGACATA 476
                      ***** *****************************************************