These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6278#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 878 fasta sequence [AGGCCANAATTTGGCACGAGGTCAAGAGTGACCTTCGTTTTCAGTTGATAAGTTTTATGAATGATTCTGTAAATTTTAACGAATGTCAAATCACAGTTCTGATGAAAGAATTTCGTGACGATTAGGCAAATCTGAAGGTGTTACTTGTTACAGATTGACGCCAATCGATGTACCATTAAAATACAGGAACCTTAAATAGCTGTCTCACCTTAGTGCTGTACTCCTTTGTGGCATGCACTAAAAGTCCTGGTTGCGGTTACTAGCCTAATTTAGAACATACATTGAGGAAATTACCGAACTGCATCATGAAGCAAGCGTTAACTTGGAATCCGGAAGGGAATCGGAAAAGAGGAAGGCAAAGAACACATTACGCCAGGAAATGGAAACAGGTATGAAAATGATGAATAACAACTGTAAAGAACTGGAAAGGATTGCCCAGGACGGGTTTGAATGGAGAGTGCTGGTGGGTGGCTTATGTTCCTGCACTAGGGGTAACAGACGTAAGTAAGTTTACTACGACTATTCAGTTATATAACATTCAATTCAATAACACTAGGAAACACGCAATCCTCTTTAGGTCGATCATTCGAGGAAAATACGAAGAAAGCACAGAAAAAAGCAGAGAATGCAACTCGAAGAACTAACAGAGAAAAAGGTGTGTCCAGGAATAAGAGAAACGATTTGAACTTGAAGCANAGCATGGGAATTATTANTAGAAGAGAAATACNNNACAGTCAGTGACAACGCTATGAAGGTCTTTNCTACTTNCATATGGTGGCAAGTCACAAATATGGTAACGTAGTCGAAGTATTCGACAGAGTAAAATGGAATTAAAAACGANGTCAGCGAGGGATCTCTTTCACGAAATATATCATGTG] [+] EMBL CD081151 [AGGCCANAATTTGGCACGAGGTCAAGAGTGACCTTCGTTTTCAGTTGATAAGTTTTATGAATGATTCTGTAAATTTTAACGAATGTCAAATCACAGTTCTGATGAAAGAATTTCGTGACGATTAGGCAAATCTGAAGGTGTTACTTGTTACAGATTGACGCCAATCGATGTACCATTAAAATACAGGAACCTTAAATAGCTGTCTCACCTTAGTGCTGTACTCCTTTGTGGCATGCACTAAAAGTCCTGGTTGCGGTTACTAGCCTAATTTAGAACATACATTGAGGAAATTACCGAACTGCATCATGAAGCAAGCGTTAACTTGGAATCCGGAAGGGAATCGGAAAAGAGGAAGGCAAAGAACACATTACGCCAGGAAATGGAAACAGGTATGAAAATGATGAATAACAACTGTAAAGAACTGGAAAGGATTGCCCAGGACGGGTTTGAATGGAGAGTGCTGGTGGGTGGCTTATGTTCCTGCACTAGGGGTAACAGACGTAAGTAAGTTTACTACGACTATTCAGTTATATAACATTCAATTCAATAACACTAGGAAACACGCAATCCTCTTTAGGTCGATCATTCGAGGAAAATACGAAGAAAGCACAGAAAAAAGCAGAGAATGCAACTCGAAGAACTAACAGAGAAAAAGGTGTGTCCAGGAATAAGAGAAACGATTTGAACTTGAAGCANAGCATGGGAATTATTANTAGAAGAGAAATACNNNACAGTCAGTGACAACGCTATGAAGGTCTTTNCTACTTNCATATGGTGGCAAGTCACAAATATGGTAACGTAGTCGAAGTATTCGACAGAGTAAAATGGAATTAAAAACGANGTCAGCGAGGGATCTCTTTCACGAAATATATCATGTG] consensusID : consensus_6278#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence [GGACAAGTAGCTACTGAAGACATTGGTGGATGTTTCGCTCAATTTCGTGGCTTGGTTGCTGTTGGACATTAATACCGTTGGATGCCGGCTCAGTGGTTTAGTGGTTAAGCGCTCGCACTCGAGACCGATAGACTCCGGGTTCGAATCTCCCCAGGCGGGATCGTGGATGCGCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCAGTCAAACAGTGCTTCCAGGTTTTCCATGGTGGTTTAGCCTCAATTGATTCATGATCTCGACTATCAAATTTTCTATTGTACTTTGCCTTCACATTTGATTCATTAGTATTTGATATTGATGACATGAATGAAATGCCCCCCTCCTTTTTTTTTCTTATAAGATTATATGTATCTGTTTATCATTCATAAGTACGAACCTTTTTTGATAATCATATTGATTTTTATTCTGTCAATCTAAACAGTATACATATTTATTTTCTTTTTGGTTTACTTCAATTTTAGAACATTTAACTGTACGTATAACACTCATTAATCCTATGCGTATTCCATTAGTTTTCACTAATGTTCATTTATTATGGATATTTAATTTGACAAATTCCATTACAGAATCATCATCTTGTATAGTGAATACAATGGACTCNAATGTTANNNTATATNNATATANNTATATCCATCTTCTCATAAATCATATAATAATGATCAATTCATTCATANTACANATGAAATNCTATCTCATTCCATTTATTNCTATTCTCATGATCAGTATGAAATGATTAATCANNTTGTTNCTGGTGAANTATNANNNTGATTATATTGTACCCAGAGACGAAAAATGTAA] [+] EMBL CD082177 [GGACAAGTAGCTACTGAAGACATTGGTGGATGTTTCGCTCAATTTCGTGGCTTGGTTGCTGTTGGACATTAATACCGTTGGATGCCGGCTCAGTGGTTTAGTGGTTAAGCGCTCGCACTCGAGACCGATAGACTCCGGGTTCGAATCTCCCCAGGCGGGATCGTGGATGCGCATTGCTGAGGAGTCCCATAATAGGACGAAACGGCAGTCAAACAGTGCTTCCAGGTTTTCCATGGTGGTTTAGCCTCAATTGATTCATGATCTCGACTATCAAATTTTCTATTGTACTTTGCCTTCACATTTGATTCATTAGTATTTGATATTGATGACATGAATGAAATGCCCCCCTCCTTTTTTTTTCTTATAAGATTATATGTATCTGTTTATCATTCATAAGTACGAACCTTTTTTGATAATCATATTGATTTTTATTCTGTCAATCTAAACAGTATACATATTTATTTTCTTTTTGGTTTACTTCAATTTTAGAACATTTAACTGTACGTATAACACTCATTAATCCTATGCGTATTCCATTAGTTTTCACTAATGTTCATTTATTATGGATATTTAATTTGACAAATTCCATTACAGAATCATCATCTTGTATAGTGAATACAATGGACTCNAATGTTANNNTATATNNATATANNTATATCCATCTTCTCATAAATCATATAATAATGATCAATTCATTCATANTACANATGAAATNCTATCTCATTCCATTTATTNCTATTCTCATGATCAGTATGAAATGATTAATCANNTTGTTNCTGGTGAANTATNANNNTGATTATATTGTACCCAGAGACGAAAAATGTAA] consensusID : consensus_6278#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [AATTTACATTTTTTCGTTCTCCTGGTAACATAATAAATTCATTTATAATTTCACCAGAAACAAATTGATTAATCATTTCATACTGATCATGAGAATAAGAATAAATGGAATGAGATAGAATTTCATTTGTTATATGAATGAATTGATCATTATTTATATGATTATGAGAAGATGGATTATTATTATTATTATTATTATTAACATTTGAGTCCATTGTATTCACTATACAAGATGATGATTCTGTAATGGAATTTGTCAAATTAAATATCCATAATAAATGAACATTAGTGAAAACTAATGGAATACGCATAGGATTAATGAGTGTTATACGTACAGTTAAATGTTCTAAAATTGAAGTAAACCAAAAAGAAAATAAATATGTATACTGTTTAGATTGACAGAATAAAAATCAATATGATTATCAAAAAAGGTTCGTACTTATGAATGATAAACAGATACATATAATCTTATAAGAAAAANAAGNGANGGGGGGGCATTTCATTCATGTCATCAATATCAAATACTAATGAATCAAATGTGAAGGCAAAGTACAATAGAAAATTTGATAGTCGAGATCATGAA] [+] EMBL CD075793 [AATTTACATTTTTTCGTTCTCCTGGTAACATAATAAATTCATTTATAATTTCACCAGAAACAAATTGATTAATCATTTCATACTGATCATGAGAATAAGAATAAATGGAATGAGATAGAATTTCATTTGTTATATGAATGAATTGATCATTATTTATATGATTATGAGAAGATGGATTATTATTATTATTATTATTATTAACATTTGAGTCCATTGTATTCACTATACAAGATGATGATTCTGTAATGGAATTTGTCAAATTAAATATCCATAATAAATGAACATTAGTGAAAACTAATGGAATACGCATAGGATTAATGAGTGTTATACGTACAGTTAAATGTTCTAAAATTGAAGTAAACCAAAAAGAAAATAAATATGTATACTGTTTAGATTGACAGAATAAAAATCAATATGATTATCAAAAAAGGTTCGTACTTATGAATGATAAACAGATACATATAATCTTATAAGAAAAANAAGNGANGGGGGGGCATTTCATTCATGTCATCAATATCAAATACTAATGAATCAAATGTGAAGGCAAAGTACAATAGAAAATTTGATAGTCGAGATCATGAA] consensusID : consensus_6278#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [GGATTTATTTGATGACTTCAAACGTATGAACAAAAGACAGGTATACTATCAGCGTGTTAACCATTGGCTATGGTTGTAGCCTCTGCCCTAATGATCTGGAAGCTTTTAGTAATTATTAGCTATAGCGAAAGTCCTTTAGTAGTTGTCTTAAGTGGCAGTATGGAGCCTGCATTCCACCGAGGCGATGTGTTATATCTAACTAATTATCCTAATGAGCCCATCCGAGTCGGTGACATCGTTGTATTCAAAATTGAAGGGAGAGAAATTCCTATTGTCCATCGCGTTCTGAGACTGCACGAAAATGTCAACGGCAGCATCAAGTTTCTCACAAAGGGAGACAATAATCCCGTTCATGATCGTGGTTTGTATGCTCCTGGTCAGGATTGGCTGACACCATCCCATCTTATTGGACGGGCCAGAGGATTCATACCTTATGTTGGTCAAGTCACCCT] [+] EMBL CD083352 [GGATTTATTTGATGACTTCAAACGTATGAACAAAAGACAGGTATACTATCAGCGTGTTAACCATTGGCTATGGTTGTAGCCTCTGCCCTAATGATCTGGAAGCTTTTAGTAATTATTAGCTATAGCGAAAGTCCTTTAGTAGTTGTCTTAAGTGGCAGTATGGAGCCTGCATTCCACCGAGGCGATGTGTTATATCTAACTAATTATCCTAATGAGCCCATCCGAGTCGGTGACATCGTTGTATTCAAAATTGAAGGGAGAGAAATTCCTATTGTCCATCGCGTTCTGAGACTGCACGAAAATGTCAACGGCAGCATCAAGTTTCTCACAAAGGGAGACAATAATCCCGTTCATGATCGTGGTTTGTATGCTCCTGGTCAGGATTGGCTGACACCATCCCATCTTATTGGACGGGCCAGAGGATTCATACCTTATGTTGGTCAAGTCACCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6278#1 -------------------------------GGACAAGTAGCTACTGAAGACATTGGTGG 29 consensus_6278#2 ------------------------------------------------------------ consensus_6278#0 AGGCCANAATTTGGCACGAGGTCAAGAGTGACCTTCGTTTTCAGTTGATAAGTTTTATGA 60 consensus_6278#3 ------------------------------------------------------------ consensus_6278#1 ATGTTTCGCTCAATTTCGTGGCTTGGTTGCTGTTGGACAT--TAATACCGTTGGATGCCG 87 consensus_6278#2 ------------------------------------------------------------ consensus_6278#0 ATGATTCTGTAAATTTTAACGAATGTCAAATCACAGTTCTGATGAAAGAATTTCGTGACG 120 consensus_6278#3 ------------------------------------------------------------ consensus_6278#1 GCTCAGTGGTTT---AGTGGTTAAGCGCTCGCACTCGAGACCGATAGACTCCGGGTTCGA 144 consensus_6278#2 ------------------------------------------------------------ consensus_6278#0 ATTAGGCAAATCTGAAGGTGTTACTTGTTACAGATTGACGCCAATCGATGTACCATTAAA 180 consensus_6278#3 ------------------------------------------------------------ consensus_6278#1 ATCTCCCCAGGCGGGATCGTGGATGCGCATTGCTGAGGAGTCCCATAATAGGACGAAACG 204 consensus_6278#2 ------------------------------------------------------------ consensus_6278#0 ATACAGGAACCTTAAATAGCTGTCTCACCTTAGTGCTGTACTCCTTTGTGGCATGCACTA 240 consensus_6278#3 ------------------------------------------------------------ consensus_6278#1 GCAGTCA-AACAGTGCTTCCAGGTTTTCCATGGTGGTTTAGCCTCAATTGATTCATGATC 263 consensus_6278#2 ------A-ATTTACATTTTTTCGTTCTCC-TGGTAACATAA--TAAATTCATTTATAATT 50 consensus_6278#0 AAAGTCCTGGTTGCGGTTACTAGCCTAATTTAG-AACATACATTGAGGAAATTACCGAAC 299 consensus_6278#3 ------------------------------------------------------------ consensus_6278#1 TCGACTATCAAATTTTCTATTGTACTTTGCCTTCACATTTGATTCATTAGTATTTGATAT 323 consensus_6278#2 TC-ACCAGAAACAAATTGATTAATCATT----TCATACT--GATCATGAGAATAAGA-AT 102 consensus_6278#0 TGCATCATGAAGCAAGCGTT--AACTTGGAATCCGGAAGGGAATCGGAAAAGAGGAAGGC 357 consensus_6278#3 ------------------------------------------------------------ consensus_6278#1 TGATGACATGA-ATGAAATGCCCCCCTCCTTTTTTTTTCTTATAAGATTATATGTATCTG 382 consensus_6278#2 AAATGGAATGAGATAGAAT------TTCATTTGTTATATGAATGAATTGATCATTATTTA 156 consensus_6278#0 AAAGAACACATTACGCCAGGA---AATGGAAACAGGTATGAAAATGATGAATAACAACTG 414 consensus_6278#3 ---------------------GGATTTATTTGATGACTTCAAACGTATGAACAAAAGACA 39 * * * * * consensus_6278#1 TTTATCATTCATAAGTACGAACCTTTTTTGATAATCATATTGATTTTTATTCTGTCAATC 442 consensus_6278#2 TATGATTATGAGAAG-ATGGATTATTATTATTATTATTATTATTAACATTTGAGTCCATT 215 consensus_6278#0 TAAAGAACTGGAAAGGATTGCCCAGGACGGGTTTGAATGGAGAGTGCTGGTGGGTGGCTT 474 consensus_6278#3 GGTATACTATCAGCGTGTTAACCAT--TGGCTATGGTTGTAGCCTCTGCCCTAATGATCT 97 * * * * consensus_6278#1 -TAAACA-GTATACATATTTATTTTCTTTT--TGGTTTACTTCAATT-TTAGAACATTTA 497 consensus_6278#2 GTATTCA-CTATACAAGATGATGATTCTGTAATGGAATTTGTCAAAT-TAAATATCCATA 273 consensus_6278#0 ATGTTCCTGCACTAGGGGTAACAGACGTAAGTAAGTTTACTACGACTATTCAGTTATATA 534 consensus_6278#3 GGAAGCT---TTTAGTAATTATTAGCTATAGCGAAAGTCCTTTAGTAGTTGTCTTAAGTG 154 * * * * * * consensus_6278#1 AC---TGTACGTATAACACTCATTAAT--CCTATGCG-TATTCCATTAGTTTTCACTA-A 550 consensus_6278#2 ATAAATGAACAT-TAGTGAAAACTAAT--GGAATACG-CATAGGATTAATGAGTGTTATA 329 consensus_6278#0 ACATTCAATTCAATAACACTAGGAAACACGCAATCCT-CTTTAGGTCGATCATT-CGAGG 592 consensus_6278#3 GCAGTATGGAGCCTGCATTCCACCGAGGCGATGTGTTATATCTAACTAATTATCCTAATG 214 * * * * * * consensus_6278#1 TGTTCATTTATTATGGATATTTAATTTGACAAATTCCATTACAGAATCATCATCTTGTAT 610 consensus_6278#2 CGTACA---GTTAAATGTTCTAAAATTGAAGTAAACCA--AAAAGAAAATAAATATGTAT 384 consensus_6278#0 AAAATACGAAGAAAGCACAGAAAAAAGCAGAGAATGCAACTCGAAGAACTAACAGAGAAA 652 consensus_6278#3 AGCCCA----TCCGAGTCGGTGACATCGTTGTATTCAAAATTGAAGGGAGAGAAATTCCT 270 * * * * consensus_6278#1 AGTGAATACAATGGACTC-NAATGTTANNNTATATNNATATANNTATATCCATCTTCTCA 669 consensus_6278#2 ACTGTTTAGATTGA--CA-GAATAAAAATCAATATGATTATCAAAAAAGGTTCGTACTTA 441 consensus_6278#0 AAGGTGTGTCCAGGAATAAGAGAAACGATTTGAACTTGAAGCANAGCATGGGAATTATTA 712 consensus_6278#3 ATTGTCCATCGCGT--TCTGAGACTGCACGAAAATGTCAACGGCAGCATCAAGTTTCTCA 328 * * * * * * * * * * consensus_6278#1 TAAATCATAT-AATAATGATCAATTCATTCATANTACANATGAAATNCTATCTCATTCCA 728 consensus_6278#2 TGAATGATA--AACA--GATACATATAATCTTATAAGAAA-AANAAGNGANGGGGGGGCA 496 consensus_6278#0 NTAGAAGAGA-AATA-CNNNACAGTCAGTGACAACGCTATGAAGGTCTTTNCTACTTNCA 770 consensus_6278#3 CAAAGGGAGACAATA--ATCCCGTTCATGATCGTGGTTTGTATGCTCCTGGTCAGGATTG 386 * ** * * consensus_6278#1 TTTATTNCTATTCTCATGATCAGTATGAAATGATTAATCANNTTGTTNCTGGTGAANTAT 788 consensus_6278#2 TTT-----CATTCATGTCATCAATATCAAAT-ACTAATGAATCAAATGTGAAGGCAAAGT 550 consensus_6278#0 TATGGT----GGCAAGTCACAAATATGGTAACGTAGTCGAAGTATTCGACAGAGTAAAAT 826 consensus_6278#3 GCTGACACCATCCCATCTTATTGGACGGGCCAGAGGATTCATACCTTATGTTGGTCAAGT 446 * * * * * consensus_6278#1 NANNNTGATTATATTGT-ACCCAGAGACGAAAAATGTAA------------- 826 consensus_6278#2 ACAATAGAAAATTTGAT-AGTC-GAGATCATGAA------------------ 582 consensus_6278#0 GGAATTAAAAACGANGTCAGCGAGGGATCTCTTTCACGAAATATATCATGTG 878 consensus_6278#3 CACCCT---------------------------------------------- 452 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||