These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_629#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TACTTCCCATTTTATTGTCTGTGTGTACGTGCCCCAGTTCTTTATAAACATAAAACTTTTTAGTTAGGTAAACCAAGATATTCCATGACGTATTTCTGTATAGTTTTAGTTAAGAGGATGACTAAATTACTTCGTTTGATTGAAAGGGTATCATCGTTTTATCTCTACAAAATGGATGATGCTATGAGATGTACATAAAACCTAAATAACGATAAGATTGCGTACTAATACTAACTTTAATCATACCAAAGTATGGTAAATTGTGTTTCTTTATAAATACTAAACTCAGTGCTTGTTATTTTTAAAGTTAATAACCATAAAGTTTTCTTCCATTAGTGAAAAAAAAAAATATTATTTACCTGTTAACGTCCCGGGGGGGGGCCGGATTCTA] [+] EMBL AI882644 [TACTTCCCATTTTATTGTCTGTGTGTACGTGCCCCAGTTCTTTATAAACATAAAACTTTTTAGTTAGGTAAACCAAGATATTCCATGACGTATTTCTGTATAGTTTTAGTTAAGAGGATGACTAAATTACTTCGTTTGATTGAAAGGGTATCATCGTTTTATCTCTACAAAATGGATGATGCTATGAGATGTACATAAAACCTAAATAACGATAAGATTGCGTACTAATACTAACTTTAATCATACCAAAGTATGGTAAATTGTGTTTCTTTATAAATACTAAACTCAGTGCTTGTTATTTTTAAAGTTAATAACCATAAAGTTTTCTTCCATTAGTGAAAAAAAAAAATATTATTTACCTGTTAACGTCCCGGGGGGGGGCCGGATTCTA] consensusID : consensus_629#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [TACTTCCCATTTDDTTGTCTGTGTGTATGTGCCCAAGTTCTTTATAAACATAAAACTTTTTAGTTAGGTAAACCAAAATATTCAATGACGTATTTCTGTTTAGTTTTAGTTTAGAGGATACAAATTTCTTCTTTGATTGAAGGGGTATCTTCTTTTTCTCTAAAAATGACTGTTGCTAATGATATTTATTTAAACCTAAATACCATATGATTGTCTATAATAACAACCTTTATATTATCCAAGTATGTAAATGTGTTTCCTTTTAATTAACAAACCAGTGTGTAATTTTAAAAGTAATAATAATAAGTTAT] [+] EMBL AI882652 [TACTTCCCATTTDDTTGTCTGTGTGTATGTGCCCAAGTTCTTTATAAACATAAAACTTTTTAGTTAGGTAAACCAAAATATTCAATGACGTATTTCTGTTTAGTTTTAGTTTAGAGGATACAAATTTCTTCTTTGATTGAAGGGGTATCTTCTTTTTCTCTAAAAATGACTGTTGCTAATGATATTTATTTAAACCTAAATACCATATGATTGTCTATAATAACAACCTTTATATTATCCAAGTATGTAAATGTGTTTCCTTTTAATTAACAAACCAGTGTGTAATTTTAAAAGTAATAATAATAAGTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_629#0 TACTTCCCATTTTATTGTCTGTGTGTACGTGCCCCAGTTCTTTATAAACATAAAACTTTT 60 consensus_629#1 TACTTCCCATTTDDTTGTCTGTGTGTATGTGCCCAAGTTCTTTATAAACATAAAACTTTT 60 ************ ************* ****** ************************* consensus_629#0 TAGTTAGGTAAACCAAGATATTCCATGACGTATTTCTGTATAGTTTTAGTTAAGAGGATG 120 consensus_629#1 TAGTTAGGTAAACCAAAATATTCAATGACGTATTTCTGTTTAGTTTTAGTTTAGAGGATA 120 **************** ****** *************** *********** ******* consensus_629#0 ACTAAATTACTTCGTTTGATTGAAAGGGTATCATCGTTTTATCTCTACAAAATGGATGAT 180 consensus_629#1 --CAAATTTCTTC-TTTGATTGAAGGGGTATCTTC--TTTTTCTCTA-AAAATGACTGTT 174 ***** **** ********** ******* ** *** ****** ****** ** * consensus_629#0 GCTA-TGAGATGTACATAAAACCTAAATAACGATAAGATTGCGTACTAATACTAACTTTA 239 consensus_629#1 GCTAATGATATTTAT-TTAAACCTAAATACC-ATATGATTGTCTA-TAATAACAACCTTT 231 **** *** ** ** * *********** * *** ***** ** ***** *** ** consensus_629#0 ATCATACCAAAGTATGGTAAATTGTGTTTCTTTATAAATACTAAACTCAGTGCTTGTTAT 299 consensus_629#1 ATATTATCCAAGTATG-TAAAT-GTGTTTCCTTTTAATTAACAAAC-CAGTG--TGTAAT 286 ** ** * ******* ***** ******* ** *** ** **** ***** *** ** consensus_629#0 TTTTAAAGTTAATAACCATAAAGTTTTCTTCCATTAGTGAAAAAAAAAAATATTATTTAC 359 consensus_629#1 TTTAAAAGT-AATAATAATAAGTTAT---------------------------------- 311 *** ***** ***** **** * * consensus_629#0 CTGTTAACGTCCCGGGGGGGGGCCGGATTCTA 391 consensus_629#1 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||