These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6291#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 745 fasta sequence [CAGGCCANAATTTTGCACGAGGTTTCGAGGACGGAGATGTGATGAGCTTCCTGAAGGAGTTCGAAGCCGTGGCGGAGCTGGTGGGAGTGAAGGAGCCGAAGGCGAAGACGGTGGTGCTGGGGACGCTGCTGAGAGGCAGAGCGAAAGTTGTATATGACAGCCTGGACGGTGCGGGCGGTAAGACGACATGGGAGGCAGTCACGGAGAGGTTGATCGTGGAGTTCGATAGCCCAGTGGACAGAGAAGAAGCACTGCAGAAGTTCCGAGTGGCGAAGTTGCCGATCGATGGTGATCCGCTGGTGCTGGCCGTCGAGCTTACCAAGTTGCTGCGTCGCGCGCTGCCAAATCTGGATGAGGAGTCGGAGGCACAGTTGTTGGCGTCGCAGTTTATCGAGAGCGTGCCAGTTGCCGTTTCCCAGCAGCTGAGACTGGTACACGCCGCGCAACCTATGGATATCAGTGAGCTTGCAAAGGTGACGCGGCAGTTGATGACACGAACAGTAGCTCCGGTCGCGTGCGAAAGTCAGGAGATAAGCAGCATTGAGAAGAAGATTGAAGAACTGCAGCACGAGATTGCGGCATTACGAGTGATTCGTAAAAGGAATGATAAGTGTTTCGCATGTGGAGGGACAGGACACTGGAAAGAT-AACTGTCCAACACGACGNAAACGGAGATATAAGTAATAATCCGGCACATTGTAGCGGGTCATGGAGTACCGAAGATGATACTAACCGACCAGGGTCCC] [+] EMBL CD079577 [CAGGCCANAATTTTGCACGAGGTTTCGAGGACGGAGATGTGATGAGCTTCCTGAAGGAGTTCGAAGCCGTGGCGGAGCTGGTGGGAGTGAAGGAGCCGAAGGCGAAGACGGTGGTGCTGGGGACGCTGCTGAGAGGCAGAGCGAAAGTTGTATATGACAGCCTGGACGGTGCGGGCGGTAAGACGACATGGGAGGCAGTCACGGAGAGGTTGATCGTGGAGTTCGATAGCCCAGTGGACAGAGAAGAAGCACTGCAGAAGTTCCGAGTGGCGAAGTTGCCGATCGATGGTGATCCGCTGGTGCTGGCCGTCGAGCTTACCAAGTTGCTGCGTCGCGCGCTGCCAAATCTGGATGAGGAGTCGGAGGCACAGTTGTTGGCGTCGCAGTTTATCGAGAGCGTGCCAGTTGCCGTTTCCCAGCAGCTGAGACTGGTACACGCCGCGCAACCTATGGATATCAGTGAGCTTGCAAAGGTGACGCGGCAGTTGATGACACGAACAGTAGCTCCGGTCGCGTGCGAAAGTCAGGAGATAAGCAGCATTGAGAAGAAGATTGAAGAACTGCAGCACGAGATTGCGGCATTACGAGTGATTCGTAAAAGGAATGATAAGTGTTTCGCATGTGGAGGGACAGGACACTGGAAAGAT AACTGTCCAACACGACGNAAACGGAGATAT ] [+] EMBL CD167614 [ AGTCAGGAGATAAGCAGCATTGAGAAGAAGATTGAAGAACTGCAGCACGAGATTGCGGCATTACGAGTGACTCGTAAAAGGAATGATAAGTGTTTCGCATGTGGAGGGACAGGACACTGG AAGATAAACTGTCCAACACGACGAAAACAGTGACCGAAGTAATAATCCGGCACATTGTAGCGGGTCATGGAGTACCGAAGATGATACTAACCGACCAGGGTCCC] consensusID : consensus_6291#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 222 fasta sequence [GATAATTTTCCAAAACTAATTAGCTTCAAACAACGTATAGAAATTACACCACCAATACAAGAACTACCTGAATTCTAACAGGTACATAAAATGGCCTCTACAAGGTTGGTCCGCCACTTTTGGTGGTGGAGATGCTCCTCCAAAATAAGTCAACAATGATTCTTTTAATGAACATTATTGAACACTTGTTGTGTGTATGTTTACTAAATAAGAAGTACTGAT] [+] EMBL CD079422 [GATAATTTTCCAAAACTAATTAGCTTCAAACAACGTATAGAAATTACACCACCAATACAAGAACTACCTGAATTCTAACAGGTACATAAAATGGCCTCTACAAGGTTGGTCCGCCACTTTTGGTGGTGGAGATGCTCCTCCAAAATAAGTCAACAATGATTCTTTTAATGAACATTATTGAACACTTGTTGTGTGTATGTTTACTAAATAAGAAGTACTGA ] [-] EMBL CD073696 [ ATAATTTTCCAAAACTAATTAGCTTCAAACAACGTATAGAAAATTTACCACCAAT CAAGAACTACCTGAATTTTAACAGGTACATAAAATGGCCTTTACAAGGTTGGTCCGCCACTTTTGGTGGTGGAGATGCTCCTCCAAAATAAGTCAACAATGATTCTTTTAATGAACATTATTGAACACGTGTTGTGTGTATGTTTAAAAAATAAGAAGTACTGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6291#0 CAGGCCANAATTTTGCACGAGGTTTCGAGGACGGAGATGTGATGAGCTTCCTGAAGGAGT 60 consensus_6291#1 ------------------------------------------------------------ consensus_6291#0 TCGAAGCCGTGGCGGAGCTGGTGGGAGTGAAGGAGCCGAAGGCGAAGACGGTGGTGCTGG 120 consensus_6291#1 ------------------------------------------------------------ consensus_6291#0 GGACGCTGCTGAGAGGCAGAGCGAAAGTTGTATATGACAGCCTGGACGGTGCGGGCGGTA 180 consensus_6291#1 ------------------------------------------------------------ consensus_6291#0 AGACGACATGGGAGGCAGTCACGGAGAGGTTGATCGTGGAGTTCGATAGCCCAGTGGACA 240 consensus_6291#1 ------------------------------------------------------------ consensus_6291#0 GAGAAGAAGCACTGCAGAAGTTCCGAGTGGCGAAGTTGCCGATCGATGGTGATCCGCTGG 300 consensus_6291#1 ------------------------------------------------------------ consensus_6291#0 TGCTGGCCGTCGAGCTTACCAAGTTGCTGCGTCGCGCGCTGCCAAATCTGGATGAGGAGT 360 consensus_6291#1 ------------------------------------------------------------ consensus_6291#0 CGGAGGCACAGTTGTTGGCGTCGCAGTTTATCGAGAGCGTGCCAGTTGCCGTTTCCCAGC 420 consensus_6291#1 ------------------------------------------------------------ consensus_6291#0 AGCTGAGACTGGTACACGCCGCGCAACCTATGGATATCAGTGAGCTTGCAAAGGTGACGC 480 consensus_6291#1 ------------------------------------------------------------ consensus_6291#0 GGCAGTTGATGACACGAACAGTAGCTCCGGTCGCGTGCGAAAGTCAGGAGATAAGCAGCA 540 consensus_6291#1 ----------------------------GATAATTTTCCAAAACTAATTAGCTTCAAACA 32 * * * * *** * * ** consensus_6291#0 TTGAGAAGAAGATTGAAGAACTGCAGCACGAGATTGCGGCATTACGAGTGATTCGTAAAA 600 consensus_6291#1 ACGTATAGAA-ATTACACCACCAATACAAGAACTACCTGAATTCTAACAGGTACATAAAA 91 * **** *** * ** ** ** * * * *** * * * * ***** consensus_6291#0 GGAATGATAAGTGTTTCGCATGTGGAGGGACAGGACACTGGAAAGATAACTGTCCAACAC 660 consensus_6291#1 TGGCCTCTACAAGGTTGGTCCGCCACT---TTTGGTGGTGGAGATGCTCCTCCAAAATAA 148 * ** * ** * * * **** * ** ** * consensus_6291#0 GACGNAAACGGAGATATAAGT-AATAATCCGGCACA-TTGTAGCGGGT-CATGGAGTACC 717 consensus_6291#1 GTCAACAATGATTCTTTTAATGAACATTATTGAACACTTGTTGTGTGTATGTTTACTAAA 208 * * ** * * * * * ** * * * *** **** * * ** * * ** consensus_6291#0 GAAGATGATACTAACCGACCAGGGTCCC 745 consensus_6291#1 TAAGAAG-TACTGAT------------- 222 **** * **** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||