cluster # 6291

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Schistosoma mansoni
cluster # 6291 cluster # 6291 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6291#0 length = 745 sequences # 2

consensus_6291#1 length = 222 sequences # 2

consensusID : consensus_6291#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 745
fasta sequence

                              [CAGGCCANAATTTTGCACGAGGTTTCGAGGACGGAGATGTGATGAGCTTCCTGAAGGAGTTCGAAGCCGTGGCGGAGCTGGTGGGAGTGAAGGAGCCGAAGGCGAAGACGGTGGTGCTGGGGACGCTGCTGAGAGGCAGAGCGAAAGTTGTATATGACAGCCTGGACGGTGCGGGCGGTAAGACGACATGGGAGGCAGTCACGGAGAGGTTGATCGTGGAGTTCGATAGCCCAGTGGACAGAGAAGAAGCACTGCAGAAGTTCCGAGTGGCGAAGTTGCCGATCGATGGTGATCCGCTGGTGCTGGCCGTCGAGCTTACCAAGTTGCTGCGTCGCGCGCTGCCAAATCTGGATGAGGAGTCGGAGGCACAGTTGTTGGCGTCGCAGTTTATCGAGAGCGTGCCAGTTGCCGTTTCCCAGCAGCTGAGACTGGTACACGCCGCGCAACCTATGGATATCAGTGAGCTTGCAAAGGTGACGCGGCAGTTGATGACACGAACAGTAGCTCCGGTCGCGTGCGAAAGTCAGGAGATAAGCAGCATTGAGAAGAAGATTGAAGAACTGCAGCACGAGATTGCGGCATTACGAGTGATTCGTAAAAGGAATGATAAGTGTTTCGCATGTGGAGGGACAGGACACTGGAAAGAT-AACTGTCCAACACGACGNAAACGGAGATATAAGTAATAATCCGGCACATTGTAGCGGGTCATGGAGTACCGAAGATGATACTAACCGACCAGGGTCCC]

[+] EMBL CD079577             [CAGGCCANAATTTTGCACGAGGTTTCGAGGACGGAGATGTGATGAGCTTCCTGAAGGAGTTCGAAGCCGTGGCGGAGCTGGTGGGAGTGAAGGAGCCGAAGGCGAAGACGGTGGTGCTGGGGACGCTGCTGAGAGGCAGAGCGAAAGTTGTATATGACAGCCTGGACGGTGCGGGCGGTAAGACGACATGGGAGGCAGTCACGGAGAGGTTGATCGTGGAGTTCGATAGCCCAGTGGACAGAGAAGAAGCACTGCAGAAGTTCCGAGTGGCGAAGTTGCCGATCGATGGTGATCCGCTGGTGCTGGCCGTCGAGCTTACCAAGTTGCTGCGTCGCGCGCTGCCAAATCTGGATGAGGAGTCGGAGGCACAGTTGTTGGCGTCGCAGTTTATCGAGAGCGTGCCAGTTGCCGTTTCCCAGCAGCTGAGACTGGTACACGCCGCGCAACCTATGGATATCAGTGAGCTTGCAAAGGTGACGCGGCAGTTGATGACACGAACAGTAGCTCCGGTCGCGTGCGAAAGTCAGGAGATAAGCAGCATTGAGAAGAAGATTGAAGAACTGCAGCACGAGATTGCGGCATTACGAGTGATTCGTAAAAGGAATGATAAGTGTTTCGCATGTGGAGGGACAGGACACTGGAAAGAT AACTGTCCAACACGACGNAAACGGAGATAT                                                                    ]
[+] EMBL CD167614             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGTCAGGAGATAAGCAGCATTGAGAAGAAGATTGAAGAACTGCAGCACGAGATTGCGGCATTACGAGTGACTCGTAAAAGGAATGATAAGTGTTTCGCATGTGGAGGGACAGGACACTGG AAGATAAACTGTCCAACACGACGAAAACAGTGACCGAAGTAATAATCCGGCACATTGTAGCGGGTCATGGAGTACCGAAGATGATACTAACCGACCAGGGTCCC]




>consensus_6291#0
CAGGCCANAATTTTGCACGAGGTTTCGAGGACGGAGATGTGATGAGCTTCCTGAAGGAGT
TCGAAGCCGTGGCGGAGCTGGTGGGAGTGAAGGAGCCGAAGGCGAAGACGGTGGTGCTGG
GGACGCTGCTGAGAGGCAGAGCGAAAGTTGTATATGACAGCCTGGACGGTGCGGGCGGTA
AGACGACATGGGAGGCAGTCACGGAGAGGTTGATCGTGGAGTTCGATAGCCCAGTGGACA
GAGAAGAAGCACTGCAGAAGTTCCGAGTGGCGAAGTTGCCGATCGATGGTGATCCGCTGG
TGCTGGCCGTCGAGCTTACCAAGTTGCTGCGTCGCGCGCTGCCAAATCTGGATGAGGAGT
CGGAGGCACAGTTGTTGGCGTCGCAGTTTATCGAGAGCGTGCCAGTTGCCGTTTCCCAGC
AGCTGAGACTGGTACACGCCGCGCAACCTATGGATATCAGTGAGCTTGCAAAGGTGACGC
GGCAGTTGATGACACGAACAGTAGCTCCGGTCGCGTGCGAAAGTCAGGAGATAAGCAGCA
TTGAGAAGAAGATTGAAGAACTGCAGCACGAGATTGCGGCATTACGAGTGATTCGTAAAA
GGAATGATAAGTGTTTCGCATGTGGAGGGACAGGACACTGGAAAGATAACTGTCCAACAC
GACGNAAACGGAGATATAAGTAATAATCCGGCACATTGTAGCGGGTCATGGAGTACCGAA
GATGATACTAACCGACCAGGGTCCC

consensusID : consensus_6291#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 222
fasta sequence

                              [GATAATTTTCCAAAACTAATTAGCTTCAAACAACGTATAGAAATTACACCACCAATACAAGAACTACCTGAATTCTAACAGGTACATAAAATGGCCTCTACAAGGTTGGTCCGCCACTTTTGGTGGTGGAGATGCTCCTCCAAAATAAGTCAACAATGATTCTTTTAATGAACATTATTGAACACTTGTTGTGTGTATGTTTACTAAATAAGAAGTACTGAT]

[+] EMBL CD079422             [GATAATTTTCCAAAACTAATTAGCTTCAAACAACGTATAGAAATTACACCACCAATACAAGAACTACCTGAATTCTAACAGGTACATAAAATGGCCTCTACAAGGTTGGTCCGCCACTTTTGGTGGTGGAGATGCTCCTCCAAAATAAGTCAACAATGATTCTTTTAATGAACATTATTGAACACTTGTTGTGTGTATGTTTACTAAATAAGAAGTACTGA ]
[-] EMBL CD073696             [ ATAATTTTCCAAAACTAATTAGCTTCAAACAACGTATAGAAAATTTACCACCAAT CAAGAACTACCTGAATTTTAACAGGTACATAAAATGGCCTTTACAAGGTTGGTCCGCCACTTTTGGTGGTGGAGATGCTCCTCCAAAATAAGTCAACAATGATTCTTTTAATGAACATTATTGAACACGTGTTGTGTGTATGTTTAAAAAATAAGAAGTACTGAT]




>consensus_6291#1
GATAATTTTCCAAAACTAATTAGCTTCAAACAACGTATAGAAATTACACCACCAATACAA
GAACTACCTGAATTCTAACAGGTACATAAAATGGCCTCTACAAGGTTGGTCCGCCACTTT
TGGTGGTGGAGATGCTCCTCCAAAATAAGTCAACAATGATTCTTTTAATGAACATTATTG
AACACTTGTTGTGTGTATGTTTACTAAATAAGAAGTACTGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6291#0      CAGGCCANAATTTTGCACGAGGTTTCGAGGACGGAGATGTGATGAGCTTCCTGAAGGAGT 60
consensus_6291#1      ------------------------------------------------------------
                                                                                  

consensus_6291#0      TCGAAGCCGTGGCGGAGCTGGTGGGAGTGAAGGAGCCGAAGGCGAAGACGGTGGTGCTGG 120
consensus_6291#1      ------------------------------------------------------------
                                                                                  

consensus_6291#0      GGACGCTGCTGAGAGGCAGAGCGAAAGTTGTATATGACAGCCTGGACGGTGCGGGCGGTA 180
consensus_6291#1      ------------------------------------------------------------
                                                                                  

consensus_6291#0      AGACGACATGGGAGGCAGTCACGGAGAGGTTGATCGTGGAGTTCGATAGCCCAGTGGACA 240
consensus_6291#1      ------------------------------------------------------------
                                                                                  

consensus_6291#0      GAGAAGAAGCACTGCAGAAGTTCCGAGTGGCGAAGTTGCCGATCGATGGTGATCCGCTGG 300
consensus_6291#1      ------------------------------------------------------------
                                                                                  

consensus_6291#0      TGCTGGCCGTCGAGCTTACCAAGTTGCTGCGTCGCGCGCTGCCAAATCTGGATGAGGAGT 360
consensus_6291#1      ------------------------------------------------------------
                                                                                  

consensus_6291#0      CGGAGGCACAGTTGTTGGCGTCGCAGTTTATCGAGAGCGTGCCAGTTGCCGTTTCCCAGC 420
consensus_6291#1      ------------------------------------------------------------
                                                                                  

consensus_6291#0      AGCTGAGACTGGTACACGCCGCGCAACCTATGGATATCAGTGAGCTTGCAAAGGTGACGC 480
consensus_6291#1      ------------------------------------------------------------
                                                                                  

consensus_6291#0      GGCAGTTGATGACACGAACAGTAGCTCCGGTCGCGTGCGAAAGTCAGGAGATAAGCAGCA 540
consensus_6291#1      ----------------------------GATAATTTTCCAAAACTAATTAGCTTCAAACA 32
                                                  * *    * * ***   *          * **

consensus_6291#0      TTGAGAAGAAGATTGAAGAACTGCAGCACGAGATTGCGGCATTACGAGTGATTCGTAAAA 600
consensus_6291#1      ACGTATAGAA-ATTACACCACCAATACAAGAACTACCTGAATTCTAACAGGTACATAAAA 91
                        *   **** ***  *  **     ** **  *  * * ***   *  * * * *****

consensus_6291#0      GGAATGATAAGTGTTTCGCATGTGGAGGGACAGGACACTGGAAAGATAACTGTCCAACAC 660
consensus_6291#1      TGGCCTCTACAAGGTTGGTCCGCCACT---TTTGGTGGTGGAGATGCTCCTCCAAAATAA 148
                       *     **   * ** *   *           *    **** *     **    ** * 

consensus_6291#0      GACGNAAACGGAGATATAAGT-AATAATCCGGCACA-TTGTAGCGGGT-CATGGAGTACC 717
consensus_6291#1      GTCAACAATGATTCTTTTAATGAACATTATTGAACACTTGTTGTGTGTATGTTTACTAAA 208
                      * *   ** *    * * * * ** * *   * *** **** * * **   *  * **  

consensus_6291#0      GAAGATGATACTAACCGACCAGGGTCCC 745
consensus_6291#1      TAAGAAG-TACTGAT------------- 222
                       **** * **** *