cluster # 6300

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Schistosoma mansoni
cluster # 6300 cluster # 6300 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6300#0 length = 599 sequences # 1

consensus_6300#1 length = 511 sequences # 1
consensus_6300#2 length = 463 sequences # 2

consensusID : consensus_6300#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [GAGGGTGAAAAAGTATGGGTGCATTTCAGAAATCGTAATATATCCGCGCTGCTTGCTTGTTCAGTTCGACTCTGATATCGAGGCCGCTGGTGCTGTTCATTGCGAAAATGGGGCATNNNNNNNNNNNNNNNNNNNNNNNNTAAAGCATGTGGAAGCCAGTGATTTGAAAGCGCTGCGTCGTGCAGGCCCACCCATTGATCGGTTTTCCACAAACTTGCAACGGCATTCCGGACGCGTTTCTAGTCGTGATCGTGATCGGGAGACCACTTCCGAGGCCGAACCAAGTCTCCGGACAACAAACGTTCACGTGACATCTCACCGCGTCGACACTCAAGGTCACCAGTCATAACGCGTACTGATCGGCGTACAGTTCATCCGCTAAACTGGTTNNNNNNNNNNNNNNNNNNNNNNNAAAAGCTGAATGGATCCAGTCTTCTTGGTCCTGCCAATAAATCAACTGAAGAGCCTATCGTCAAATCACCACCTTATATGGTGGCAATAATAACCGTCCAGCATGATCTTGTTCCATATGCGGAAATTATAGAACAACGTCCTTCTGTTACTCATATAGTAGTTCTACTGTCTGTAGATCATCTTAG]

[+] EMBL CD080989             [GAGGGTGAAAAAGTATGGGTGCATTTCAGAAATCGTAATATATCCGCGCTGCTTGCTTGTTCAGTTCGACTCTGATATCGAGGCCGCTGGTGCTGTTCATTGCGAAAATGGGGCATNNNNNNNNNNNNNNNNNNNNNNNNTAAAGCATGTGGAAGCCAGTGATTTGAAAGCGCTGCGTCGTGCAGGCCCACCCATTGATCGGTTTTCCACAAACTTGCAACGGCATTCCGGACGCGTTTCTAGTCGTGATCGTGATCGGGAGACCACTTCCGAGGCCGAACCAAGTCTCCGGACAACAAACGTTCACGTGACATCTCACCGCGTCGACACTCAAGGTCACCAGTCATAACGCGTACTGATCGGCGTACAGTTCATCCGCTAAACTGGTTNNNNNNNNNNNNNNNNNNNNNNNAAAAGCTGAATGGATCCAGTCTTCTTGGTCCTGCCAATAAATCAACTGAAGAGCCTATCGTCAAATCACCACCTTATATGGTGGCAATAATAACCGTCCAGCATGATCTTGTTCCATATGCGGAAATTATAGAACAACGTCCTTCTGTTACTCATATAGTAGTTCTACTGTCTGTAGATCATCTTAG]




>consensus_6300#0
GAGGGTGAAAAAGTATGGGTGCATTTCAGAAATCGTAATATATCCGCGCTGCTTGCTTGT
TCAGTTCGACTCTGATATCGAGGCCGCTGGTGCTGTTCATTGCGAAAATGGGGCATNNNN
NNNNNNNNNNNNNNNNNNNNTAAAGCATGTGGAAGCCAGTGATTTGAAAGCGCTGCGTCG
TGCAGGCCCACCCATTGATCGGTTTTCCACAAACTTGCAACGGCATTCCGGACGCGTTTC
TAGTCGTGATCGTGATCGGGAGACCACTTCCGAGGCCGAACCAAGTCTCCGGACAACAAA
CGTTCACGTGACATCTCACCGCGTCGACACTCAAGGTCACCAGTCATAACGCGTACTGAT
CGGCGTACAGTTCATCCGCTAAACTGGTTNNNNNNNNNNNNNNNNNNNNNNNAAAAGCTG
AATGGATCCAGTCTTCTTGGTCCTGCCAATAAATCAACTGAAGAGCCTATCGTCAAATCA
CCACCTTATATGGTGGCAATAATAACCGTCCAGCATGATCTTGTTCCATATGCGGAAATT
ATAGAACAACGTCCTTCTGTTACTCATATAGTAGTTCTACTGTCTGTAGATCATCTTAG

consensusID : consensus_6300#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [CCCCCTGCTACATTATCGGCGCAGAATCACTTGACCAGAGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTCTCAGCAACTCCACATCCTTTCCCACTTAGCACACGCTTAGGGGCCTTAGTTGATGGTCTGGGCTGTTTCCCTCTCGACAATGAAGCTTATCCCCCACTGTCTCACTGCTACACTCTCACTTACCGGCATTCGGAGTTTAGCTAACGTCAGTAACCCTCACGGGCCCATCGGCCATCCAGTAGCTCTACCTCCAGCAAGAAACATGTAACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACAGAGTTTGATTGGCCTTTCACCCCTATCCACAGCTCATCCCCCCAGTTTTCAACCTAGGTGGGTTCGGTCCTCCACACGCTCTTACACGTGCTTCAACCTGGCCATGGATAGATCACTCCGCTTCGGGTCTAGATCCTGCCACTACAACGCCCTGTTCAGACTCGCTN]

[+] EMBL CD160588             [CCCCCTGCTACATTATCGGCGCAGAATCACTTGACCAGAGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTCTCAGCAACTCCACATCCTTTCCCACTTAGCACACGCTTAGGGGCCTTAGTTGATGGTCTGGGCTGTTTCCCTCTCGACAATGAAGCTTATCCCCCACTGTCTCACTGCTACACTCTCACTTACCGGCATTCGGAGTTTAGCTAACGTCAGTAACCCTCACGGGCCCATCGGCCATCCAGTAGCTCTACCTCCAGCAAGAAACATGTAACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACAGAGTTTGATTGGCCTTTCACCCCTATCCACAGCTCATCCCCCCAGTTTTCAACCTAGGTGGGTTCGGTCCTCCACACGCTCTTACACGTGCTTCAACCTGGCCATGGATAGATCACTCCGCTTCGGGTCTAGATCCTGCCACTACAACGCCCTGTTCAGACTCGCTN]




>consensus_6300#1
CCCCCTGCTACATTATCGGCGCAGAATCACTTGACCAGAGAGCTATTACGCACTCTTTCA
AGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTCTCAGCAACTCCACATCCTTTCCCAC
TTAGCACACGCTTAGGGGCCTTAGTTGATGGTCTGGGCTGTTTCCCTCTCGACAATGAAG
CTTATCCCCCACTGTCTCACTGCTACACTCTCACTTACCGGCATTCGGAGTTTAGCTAAC
GTCAGTAACCCTCACGGGCCCATCGGCCATCCAGTAGCTCTACCTCCAGCAAGAAACATG
TAACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACAGAGTTTGATTGGCCTT
TCACCCCTATCCACAGCTCATCCCCCCAGTTTTCAACCTAGGTGGGTTCGGTCCTCCACA
CGCTCTTACACGTGCTTCAACCTGGCCATGGATAGATCACTCCGCTTCGGGTCTAGATCC
TGCCACTACAACGCCCTGTTCAGACTCGCTN

consensusID : consensus_6300#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 463
fasta sequence

                              [AAGGTACATTTGTTTATACAAAGTGCGTTTGAGTTAGTAAGGGTAGTCAATATGTTTTTTCTAATTAGTAGTAGTATGGATTAAATATTTGAAGGAGATTGGAAAATCTACACACAAGAAAACACCTTACAAGTAGGCAACAAAACACATAAAAGGAAACAAACAAAAAAAACAACCACGCAATAGAACAATTATAGAAGAACCGAAAACCCAACATTGAATTACAGCGTATAAAGTTTTTATAGCCAAATTTTACAATTACGGAAGAATATTCACAGTAAATCACGCCATTTAAAAGCCCAAATTTAATATTGTGCAATGAATGATAACTATCAGTAAAAGGGATATATGAACAAGTGAAACAGGACATTTTAAATACAAAAAAAATAAAGGGTTTATATATATATATATATATATATATATAAATGTTGGTATCTTCTACTGGTATTTTATACATGAGTAG]

[+] EMBL CD077107             [AAGGTACATTTGTTTATACAAAGTGCGTTTGAGTTAGTAAGGGTAGTCAATATGTTTTTTCTAATTAGTAGTAGTATGGATTAAATATTTGAAGGAGATTGGAAAATCTACACACAAGAAAACACCTTACAAGTAGGCAACAAAACACATAAAAGGAAACAAACAAAAAAAACAACCACGCAATAGAACAATTATAGAAGAACCGAAAACCCAACATTGAATTACAGCGTATAAAGTTTTTATAGCCAAATTTTACAATTACGGAAGAATATTCACAGTAAATCACGCCATTTAAAAGCCCAAATTTAATATTGTGCAATGAATGATAACTATCAGTAAAAGGGATATATGAACAAGTGAAACAGGACATTTTAAATACAAAAAAAATAAAGGGTTTATATATATATATATATATATATATATAAATGTTGGTATCTTCTACTGGTATTTTATACATGAGTAG]
[+] EMBL CD156531             [                                                                                                                        AACACCTTACAAGTAGGCAACAAAACACATAAAAGGAAACAAACAAAAAAAACAACCACGCAATAGAACAATTATAGAAGAACCGAAAACCCAACATTGAATTACAGCGTATAAAGTTTTTATAGCCAAATTTTACAATTACGGAAGAATATTCACAGTAAATCACGCCATTTAGAAGCCCAAATTTAAT                                                                                                                                                         ]




>consensus_6300#2
AAGGTACATTTGTTTATACAAAGTGCGTTTGAGTTAGTAAGGGTAGTCAATATGTTTTTT
CTAATTAGTAGTAGTATGGATTAAATATTTGAAGGAGATTGGAAAATCTACACACAAGAA
AACACCTTACAAGTAGGCAACAAAACACATAAAAGGAAACAAACAAAAAAAACAACCACG
CAATAGAACAATTATAGAAGAACCGAAAACCCAACATTGAATTACAGCGTATAAAGTTTT
TATAGCCAAATTTTACAATTACGGAAGAATATTCACAGTAAATCACGCCATTTAAAAGCC
CAAATTTAATATTGTGCAATGAATGATAACTATCAGTAAAAGGGATATATGAACAAGTGA
AACAGGACATTTTAAATACAAAAAAAATAAAGGGTTTATATATATATATATATATATATA
TATAAATGTTGGTATCTTCTACTGGTATTTTATACATGAGTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6300#1      ---CCCCCTGCTACATTATCGGCGCAGAATCACTTGACCAGAGAGCTATTACGCACTCTT 57
consensus_6300#2      ------------------------------------------------------------
consensus_6300#0      GAGGGTGAAAAAGTATGGGTGCATTTCAGAAATCGTAATATATCCGCGCTGCTTGCTTGT 60
                                                                                  

consensus_6300#1      TCAAGGATGGCTGCTTCTA-AGCCAAC--CTCCTGGTTGTCTCAGCAACTCCACAT-CCT 113
consensus_6300#2      -AAGGTACATTTGTTTATACAAAGTGC--GTTTGAGTTAGTAAGGGTAGTCAATATGTTT 57
consensus_6300#0      TCAGTTCGACTCTGATATCGAGGCCGCTGGTGCTGTTCATTGCGAAAATGGGGCAT---N 117
                        *            * *  *     *   *     *          *      **    

consensus_6300#1      TTCCCACTTAGCACACGCTTAGGGGCCTTAGTTGATGGTC--TGGGCTGTTTCCCTCTCG 171
consensus_6300#2      TTTCTAATTAGTAGTAGTATGGATTAAATATTTGAAGG----AGATTGGAAAATCTACAC 113
consensus_6300#0      NNNNNNNNNNNNNNNNNNNNNNNTAAAGCATGTGGAAGCCAGTGATTTGAAAGCGCTGCG 177
                                                   *  **   *     *    *           

consensus_6300#1      ACAATGAAGCTTATCCCCCACTGTCTCACTGCTACACTCTCACTTACCGGCATTCGGAGT 231
consensus_6300#2      ACAAGAAAAC--ACCTTACAAGTAGGCAACAAAACACATAAAAGGAAACAAACAAAAAAA 171
consensus_6300#0      TCGTGCAGGCCCACCCATTGATCGGTTTTCCACAAACTTGCAACGG--CATTCCGGACGC 235
                       *    *  *  * *                  * **    *                  

consensus_6300#1      TTAGCTA-ACGTCAGTAACCCTCACGGGCCCATCGGCCATCCAGTAGCTCTACCTCCAGC 290
consensus_6300#2      ACAACCACGCAATAG-AACAATTATAGAAGAACCGAAAACCCAACA--TTGAATTACAGC 228
consensus_6300#0      GTTTCTA-GTCGTGATCGTGATCGGGAGACCACTTCCGAGGCCGAA--CCAAGTCTCCGG 292
                          * *              *         *      *  *   *     *    * * 

consensus_6300#1      --AAGAAACATGTAACGCTGCACCTAAATGCATTTCGGGGAGAAC-----CAGCTA-TCA 342
consensus_6300#2      GTATAAAGTTTTTATAGCCAAATTT---TACAATTACGGAAGAATATTCACAGTAAATCA 285
consensus_6300#0      ACAACAAACGTTCA-CGTGACATCTCACCGCGTCGACACTCAAGG-TCACCAGTCA-TAA 349
                        *  **   *  *  *    *  *     *           *       ***  * * *

consensus_6300#1      CAGAGTTTGATTGGC-C---TTTCACCCCTATCCACAGCTCATCCCC-CCAGTTTTCAAC 397
consensus_6300#2      CGCCATTTAAAAGCC-CAAATTTAATATTGTGCAATGAATGATAACTATCAGTAAAAGGG 344
consensus_6300#0      CGCGTACTGATCGGCGTACAGTTCATCCGCTAAACTGGTTNNNNNNNNNNNNNNNNNNNN 409
                      *      * *  * *      ** *              *                    

consensus_6300#1      CTAGGTGGGTTCGGTCCTCCACAC------GCTCT---TACACGTGCTTCAACCTGGCCA 448
consensus_6300#2      ATATATGAACAAGTGAAACAGGAC------ATTTTAAATACAAAAAAAATAAAGGGTTTA 398
consensus_6300#0      NNNAAAAGCTGAATGGATCCAGTCTTCTTGGTCCTGCCAATAAATCAACTGAAGAGCCTA 469
                                        *    *          *    * *         *   *   *

consensus_6300#1      TGGATAGATCACT--CCGCTTCGGGTCTAGATCCTGCCA-CTACAACGCCCTGTTCAGAC 505
consensus_6300#2      TATATATAT-ATA--TATATATATATATAAATGTTGGTATCTTCTACTGGTATTTTATAC 455
consensus_6300#0      TCGTCAAATCACCACCTTATATGGTGGCAATAATAACCGTCCAGCATGATCTTGTTCCAT 529
                      *    * ** *        *        *           *    *        *   * 

consensus_6300#1      TCGCTN------------------------------------------------------ 511
consensus_6300#2      ATGAGTAG---------------------------------------------------- 463
consensus_6300#0      ATGCGGAAATTATAGAACAACGTCCTTCTGTTACTCATATAGTAGTTCTACTGTCTGTAG 589
                        *                                                         

consensus_6300#1      ----------
consensus_6300#2      ----------
consensus_6300#0      ATCATCTTAG 599