cluster # 6306

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Schistosoma mansoni
cluster # 6306 cluster # 6306 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6306#0 length = 608 sequences # 3

consensus_6306#1 length = 150 sequences # 1

consensusID : consensus_6306#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 608
fasta sequence

                              [GAATCATGAGTTTTCTGCTTTTAATCTTACTACATACTTGTATGTGAGGACCTAAAGGAACTAGTGTTCTAGCTAGTGTAGCTCGGTTCGGTTATCACCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGATCCAATCAGGCTATGCTGGCTGGAACAATCGTTCCTCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAAAGCGGTAAGACTAAAAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACCGCCGACTGTACAGAGGTGTGACGGCAGTGAAGTTTCCTTCAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAATTAGGAGTGGGGTTAGAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGCGGTAAGGTCCTTTGAAGAACGGAGCTAACACGTCAAAAATCCCCCACAAAAAGGCCGTGCGTGACCAGCCTCAAGCTGTTGTCCATTGGGCACTGCGGTCACGCTCCCAGGTCGTTAAGACCAACACTAATCCAATTTCCTTTTCAGGTCCCTCAAGAAATACCCTTCCACGGTGTGGGCAGCCGGGAAGTGAAATAAGCCCTCAT]

[-] EMBL CD189555             [GAATCATGAGTTTTCTGCTTTTAATCTTACTACATACTTGTATGTGAGGACCTAAAGGAACTAGTGTTCTAGCTAGTGTAGCTCGGTTCGGTTATCACCGTTGCTGCTACCTTGACGTGGTGGTCGGGCTTGCCTATCGTGATGATCCAATCAGGCTATGCTGGCTGGAACAATCGTTCCTCAAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD096711             [                                                                                                     TGCTGCTACCTTGACGTGGTGGTCGGGCTTGCTTATCGTGATGAACCAATCGGGCTATGCTGGCTGGAACAATCGTTCCTCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAAAGCGGTAAGACTAAAAGCAGCAATCCCAAGGTCCGAAGGCGAAGTCGTACCGCCGACTGTACAGAGGTGTGACGGCAGTGAAGTTTCCTTCAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAATTAGGAGTGGGGTTAGAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGCGGTAAGGTCCTTTGAAGAACGGAGCTAACACGTCAAAAATCCCCCACAAAAAGGCCGTGCGTGACCAGCCTCAAGCTGTTGTCCATTGGGCACTGCGGTCACGCTCCCAGGTCGTTAAGACCAACACTAATCCAA                                                                       ]
[-] EMBL CD061470             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CAAGCAGTTGTCCCTTGGGCACTGCGGTCACGCTCCCAGGTCGTTAAGACCAACACTAATCCAATTTCCTTTTCAGGTCCCTCAAGAAATACCCTTCCACGGTGTGGGCAGCCGGGAAGTGAAATAAGCCCTCAT]




>consensus_6306#0
GAATCATGAGTTTTCTGCTTTTAATCTTACTACATACTTGTATGTGAGGACCTAAAGGAA
CTAGTGTTCTAGCTAGTGTAGCTCGGTTCGGTTATCACCGTTGCTGCTACCTTGACGTGG
TGGTCGGGCTTGCCTATCGTGATGATCCAATCAGGCTATGCTGGCTGGAACAATCGTTCC
TCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAAAGCGGTAAGACTAAAAGCAGCAATC
CCAAGGTCCGAAGGCGAAGTCGTACCGCCGACTGTACAGAGGTGTGACGGCAGTGAAGTT
TCCTTCAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAATTAGGAGTGGGGTTAGA
AAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGCGGTAAGGTCCTTTGAAGA
ACGGAGCTAACACGTCAAAAATCCCCCACAAAAAGGCCGTGCGTGACCAGCCTCAAGCTG
TTGTCCATTGGGCACTGCGGTCACGCTCCCAGGTCGTTAAGACCAACACTAATCCAATTT
CCTTTTCAGGTCCCTCAAGAAATACCCTTCCACGGTGTGGGCAGCCGGGAAGTGAAATAA
GCCCTCAT

consensusID : consensus_6306#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 150
fasta sequence

                              [GAAAGATTTGAAAGTGATCAACTTGGTCTCGTGTGCAGTTAAGGGTATGAGGGCTAGTATCACTTCCCGGCTGCCCACACCGTGGAAGGGTATTTCTTGAGGGACCCTGAAAAAGAAGTTGGATTATTGTTGGTCTGAACGACCTGGGGG]

[+] EMBL CD114339             [GAAAGATTTGAAAGTGATCAACTTGGTCTCGTGTGCAGTTAAGGGTATGAGGGCTAGTATCACTTCCCGGCTGCCCACACCGTGGAAGGGTATTTCTTGAGGGACCCTGAAAAAGAAGTTGGATTATTGTTGGTCTGAACGACCTGGGGG]




>consensus_6306#1
GAAAGATTTGAAAGTGATCAACTTGGTCTCGTGTGCAGTTAAGGGTATGAGGGCTAGTAT
CACTTCCCGGCTGCCCACACCGTGGAAGGGTATTTCTTGAGGGACCCTGAAAAAGAAGTT
GGATTATTGTTGGTCTGAACGACCTGGGGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6306#0      GAATCATGAGTTTTCTGCTTTTAATCTTACTACATACTTGTATGTGAGGACCTAAAGGAA 60
consensus_6306#1      ------------------------------GAAAGATTTGAAAGTGATCAACTT---GGT 27
                                                     * * * *** * ****  * **    *  

consensus_6306#0      CTAGTGTTCTAGCTAGTGTAGCTCGGTTCGGTTATCACCGTTGCTGCTACCTTGACGTGG 120
consensus_6306#1      CTCGTGTGCAGTTAAGGGTATGAGGGCTAGTATCACTTCCCGGCTGCCCACACCGTGGAA 87
                      ** **** *     ** ***    ** * *  *  *  *   *****   *     *   

consensus_6306#0      TGGTCGGGCTTGCCT-ATCGTGATGATCCAATCAGGCTAT-GCTGGCTGGAACAATCGTT 178
consensus_6306#1      GGGTATTTCTTGAGGGACCCTGAAAAAGAAGTTGGATTATTGTTGGTCTGAACGA----- 142
                       ***    ****    * * ***  *   * *  *  *** * ***   **** *     

consensus_6306#0      CCTCAAGGTCCTACCATGCCAGACAGGTCGGTTGAAAAGCGGTAAGACTAAAAGCAGCAA 238
consensus_6306#1      CCTGGGGG---------------------------------------------------- 150
                      ***   **                                                    

consensus_6306#0      TCCCAAGGTCCGAAGGCGAAGTCGTACCGCCGACTGTACAGAGGTGTGACGGCAGTGAAG 298
consensus_6306#1      ------------------------------------------------------------
                                                                                  

consensus_6306#0      TTTCCTTCAGACAACCAGCATGACAGCGATGCTGCCTTCCCACAATTAGGAGTGGGGTTA 358
consensus_6306#1      ------------------------------------------------------------
                                                                                  

consensus_6306#0      GAAAATGCACACCTCGCCTTATCCCACGGATTTCCGTCTCCGGCGGTAAGGTCCTTTGAA 418
consensus_6306#1      ------------------------------------------------------------
                                                                                  

consensus_6306#0      GAACGGAGCTAACACGTCAAAAATCCCCCACAAAAAGGCCGTGCGTGACCAGCCTCAAGC 478
consensus_6306#1      ------------------------------------------------------------
                                                                                  

consensus_6306#0      TGTTGTCCATTGGGCACTGCGGTCACGCTCCCAGGTCGTTAAGACCAACACTAATCCAAT 538
consensus_6306#1      ------------------------------------------------------------
                                                                                  

consensus_6306#0      TTCCTTTTCAGGTCCCTCAAGAAATACCCTTCCACGGTGTGGGCAGCCGGGAAGTGAAAT 598
consensus_6306#1      ------------------------------------------------------------
                                                                                  

consensus_6306#0      AAGCCCTCAT 608
consensus_6306#1      ----------