cluster # 631

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Schistosoma mansoni
cluster # 631 cluster # 631 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_631#0 length = 305 sequences # 1

consensus_631#1 length = 255 sequences # 1

consensusID : consensus_631#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 305
fasta sequence

                              [CATAGGCAATTGCCGCAGCTGGCGGCTCGTTAATGATTCTCAACACATTAGGACCAACTATAACACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAAGAACCGTTATAACAGCGTCACTCGCCGTGCTGCCCAAATAACTTTCACCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTCCTCAGCGGAAAACATCTTTTTCTCACCCTTGTACTCAACACAAATCTTCAGCTTCCCACTAGAACTCAAGGAAATATCTCTTGAAGTCAGTCACTAGTGAGCATAT]

[+] EMBL CD113985             [CATAGGCAATTGCCGCAGCTGGCGGCTCGTTAATGATTCTCAACACATTAGGACCAACTATAACACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAAGAACCGTTATAACAGCGTCACTCGCCGTGCTGCCCAAATAACTTTCACCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTCCTCAGCGGAAAACATCTTTTTCTCACCCTTGTACTCAACACAAATCTTCAGCTTCCCACTAGAACTCAAGGAAATATCTCTTGAAGTCAGTCACTAGTGAGCATAT]




>consensus_631#0
CATAGGCAATTGCCGCAGCTGGCGGCTCGTTAATGATTCTCAACACATTAGGACCAACTA
TAACACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAAGAACCGTTA
TAACAGCGTCACTCGCCGTGCTGCCCAAATAACTTTCACCAACCTCCTTCATCTTCGTCA
ACACCATTGACGAAATCTCCTCAGCGGAAAACATCTTTTTCTCACCCTTGTACTCAACAC
AAATCTTCAGCTTCCCACTAGAACTCAAGGAAATATCTCTTGAAGTCAGTCACTAGTGAG
CATAT

consensusID : consensus_631#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 255
fasta sequence

                              [TCACCTCGAATATCCATCCTCATTGGGAGAGGAGGGCCCAATATGGATGTGCCCCCCCCCCGAAAACAAAATTCAAAATTTTTCCCCTCCACCCTTTTTTTTGTAAAAAAAAAGGGGGGAAATCGCCGAAGTTGCCGGCTGGTTAAGGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCT]

[+] EMBL CD180909             [TCACCTCGAATATCCATCCTCATTGGGAGAGGAGGGCCCAATATGGATGTGCCCCCCCCCCGAAAACAAAATTCAAAATTTTTCCCCTCCACCCTTTTTTTTGTAAAAAAAAAGGGGGGAAATCGCCGAAGTTGCCGGCTGGTTAAGGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCT]




>consensus_631#1
TCACCTCGAATATCCATCCTCATTGGGAGAGGAGGGCCCAATATGGATGTGCCCCCCCCC
CGAAAACAAAATTCAAAATTTTTCCCCTCCACCCTTTTTTTTGTAAAAAAAAAGGGGGGA
AATCGCCGAAGTTGCCGGCTGGTTAAGGATTCTCAACACATTAAGACCAGCTATAGCACC
TGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGC
GTCACTCACCGTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_631#0      ------------------------------------------------------------
consensus_631#1      TCACCTCGAATATCCATCCTCATTGGGAGAGGAGGGCCCAATATGGATGTGCCCCCCCCC 60
                                                                                 

consensus_631#0      -----------------------------------------------------CATAGGC 7
consensus_631#1      CGAAAACAAAATTCAAAATTTTTCCCCTCCACCCTTTTTTTTGTAAAAAAAAAGGGGGGA 120
                                                                              ** 

consensus_631#0      AATTGCCGCAGCTGGCGGCTCGTTAATGATTCTCAACACATTAGGACCAACTATAACACC 67
consensus_631#1      AATCGCCGAAGTTGCCGGCTGGTTAAGGATTCTCAACACATTAAGACCAGCTATAGCACC 180
                     *** **** ** ** ***** ***** **************** ***** ***** ****

consensus_631#0      TGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAAGAACCGTTATAACAGC 127
consensus_631#1      TGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGC 240
                     ******************************************* ****************

consensus_631#0      GTCACTCGCCGTGCTGCCCAAATAACTTTCACCAACCTCCTTCATCTTCGTCAACACCAT 187
consensus_631#1      GTCACTCACCGTCCT--------------------------------------------- 255
                     ******* **** **                                             

consensus_631#0      TGACGAAATCTCCTCAGCGGAAAACATCTTTTTCTCACCCTTGTACTCAACACAAATCTT 247
consensus_631#1      ------------------------------------------------------------
                                                                                 

consensus_631#0      CAGCTTCCCACTAGAACTCAAGGAAATATCTCTTGAAGTCAGTCACTAGTGAGCATAT 305
consensus_631#1      ----------------------------------------------------------