These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6314#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 687 fasta sequence [CGAGGGGAATATTTCAGCAAATCCAAACGTTCAAAGAACAAGCGAATAACAATGAAGATTATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATCTAATTGCAGCACTAGATAAGGTAGTTTATTAGATCTCCTATTATTGTTGTTAGTTGGATGATGCTGAGGATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCAGCTTCCGAATCTCAGTCTGTTGATAGCTCATCAACCTCCTCTACCTTGGATGTAAAAACAAAAGAAAATGTATTAACAGAAGACGAACTTGAGAAGATAAAGATAGATTTAGCCCGTTATGTCACCATGAAAGAGGGTACTGCTACTGATGACGCAACGACTGCAGTTGTTACCATTAGTAAACTTGCCCCAGATATTGTATGTACCAATGACTTTGACGAGGGGTTTCACGATCAAGTGATCGACCACACCCTTCGCTATCTGAAGTTCCTTTTGTCAAAATGGGGTCATG] [+] EMBL CD084353 [CGAGGGGAATATTTCAGCAAATCCAAACGTTCAAAGAACAAGCGAATAACAATGAAGATTATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATCTAATTGCAGCACTAGATAAGGTAGTTTATTAGATCTCCTATTATTGTTGTTAGTTGGATGATGCTGAGGATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCAGCTTCCGAATCTCAGTCTGTTGATAGCTCATCAACCTCCTCTACCTTGGATGTAAAAACAAAAGAAAATGTATTAACAGAAGACGAACTTGAGAAGATAAAGATAGATTTA ] [-] EMBL CD189382 [ CAAAAGAAAATGTATTAACAGAAGACGAACTTGAGAAGATAAAGATAGATTTAGCCCGTTATGTCACCATGAAAGAGGGTACTGCTACTGATGACGCAACGACTGCAGTTGTTACCATTAGTAAACTTGCCCCAGATATTGTATGTACCAATGACTTTGACGAGGGGTTTCACGATCAAGTGATCGACCACACCCTTCGCTATCTGAAGTTCCTTTTGTCAAAATGGGGTCATG] consensusID : consensus_6314#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 314 fasta sequence [ACAATGAAGATTATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATTTAATTGCAGCACTAGATAAGTTGGATGATGCTGAGGATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCA] [-] EMBL CD189944 [ACAATGAAGATTATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATTTAATTGCAGCACTAGATAAGTTGGATGATGCTGAGGATGAAGAG ] [+] EMBL CD184847 [ CTCTCGTTGAAAAAGTTCGAAGAAAGAAGTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCCTCTAAGGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGTTGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATCTAATTGCAGCACTAGATAAGTTGGATGATGCTGAGGATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6314#0 CGAGGGGAATATTTCAGCAAATCCAAACGTTCAAAGAACAAGCGAATAACAATGAAGATT 60 consensus_6314#1 ------------------------------------------------ACAATGAAGATT 12 ************ consensus_6314#0 ATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAA 120 consensus_6314#1 ATAATTTTAGGACTAAGACAGAGGAAGAGGATCTCTTGTTGAAAAAGTTCGAAGAAAGAA 72 ************************************************************ consensus_6314#0 GTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAA 180 consensus_6314#1 GTCGGGAAGAAAGAGAAAAAGGGAAGCTTATGCCTCGTAAAGAAGTTATTCGTCTTCTAA 132 ************************************************************ consensus_6314#0 GGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGT 240 consensus_6314#1 GGGAACGAAATCAACCCATACGATTATTTGGTGAAAGTGATTATGACACTTTCCAACGGT 192 ************************************************************ consensus_6314#0 TGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATCTAATTGCAG 300 consensus_6314#1 TGAAAAGGGTCCAACTTTTAGAACCTGAATCAAAAGGATTGCGCAATGATTTAATTGCAG 252 ************************************************** ********* consensus_6314#0 CACTAGATAAGGTAGTTTATTAGATCTCCTATTATTGTTGTTAGTTGGATGATGCTGAGG 360 consensus_6314#1 CACTAGATAA---------------------------------GTTGGATGATGCTGAGG 279 ********** ***************** consensus_6314#0 ATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCAGCTTCCGAATCTCAGTCTGTTGATA 420 consensus_6314#1 ATGAAGAGTTTTACACCTCAGGTCGTGGAAAATCA------------------------- 314 *********************************** consensus_6314#0 GCTCATCAACCTCCTCTACCTTGGATGTAAAAACAAAAGAAAATGTATTAACAGAAGACG 480 consensus_6314#1 ------------------------------------------------------------ consensus_6314#0 AACTTGAGAAGATAAAGATAGATTTAGCCCGTTATGTCACCATGAAAGAGGGTACTGCTA 540 consensus_6314#1 ------------------------------------------------------------ consensus_6314#0 CTGATGACGCAACGACTGCAGTTGTTACCATTAGTAAACTTGCCCCAGATATTGTATGTA 600 consensus_6314#1 ------------------------------------------------------------ consensus_6314#0 CCAATGACTTTGACGAGGGGTTTCACGATCAAGTGATCGACCACACCCTTCGCTATCTGA 660 consensus_6314#1 ------------------------------------------------------------ consensus_6314#0 AGTTCCTTTTGTCAAAATGGGGTCATG 687 consensus_6314#1 --------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||