cluster # 6316

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Schistosoma mansoni
cluster # 6316 cluster # 6316 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6316#0 length = 572 sequences # 1

consensus_6316#1 length = 553 sequences # 2
consensus_6316#2 length = 498 sequences # 1

consensusID : consensus_6316#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 572
fasta sequence

                              [TCGGCGGCCGATTCGGGTTTTGTGTCTCGAAATGGTCAGGGGATTGTCTGCAAAGGTGGTTGTTAGGGGGCTGCCTCCCAAATTAGGGGCCGATGATTTCATCAGGATTGTTGACCCGCTACCCTCTCACACTTACTTTAGGTTTTGCGGTGCAGATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGTTTGATGGCTACATTTTCTTGGATTGCGGGGTAATCCAAGTTTTTTAGTTACTCTTTCAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGTGTGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGNGAATCCATTNTAGATGATCTCCANAACAAGGAAGTGAATGCTCTTCAGGTGGGTGCAATAATGTAAT]

[+] EMBL CD156766             [TCGGCGGCCGATTCGGGTTTTGTGTCTCGAAATGGTCAGGGGATTGTCTGCAAAGGTGGTTGTTAGGGGGCTGCCTCCCAAATTAGGGGCCGATGATTTCATCAGGATTGTTGACCCGCTACCCTCTCACACTTACTTTAGGTTTTGCGGTGCAGATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGTTTGATGGCTACATTTTCTTGGATTGCGGGGTAATCCAAGTTTTTTAGTTACTCTTTCAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGTGTGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGNGAATCCATTNTAGATGATCTCCANAACAAGGAAGTGAATGCTCTTCAGGTGGGTGCAATAATGTAAT]




>consensus_6316#0
TCGGCGGCCGATTCGGGTTTTGTGTCTCGAAATGGTCAGGGGATTGTCTGCAAAGGTGGT
TGTTAGGGGGCTGCCTCCCAAATTAGGGGCCGATGATTTCATCAGGATTGTTGACCCGCT
ACCCTCTCACACTTACTTTAGGTTTTGCGGTGCAGATGACTCATTGGGTGGTCTGGGGTT
GACGCGGGTTTACATTACATTCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGTT
TGATGGCTACATTTTCTTGGATTGCGGGGTAATCCAAGTTTTTTAGTTACTCTTTCAGGG
AAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGTGTGCTAAAGG
GTCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGA
CTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGA
ATCAGAGTCTAAAAAAACTCCCTGNGAATCCATTNTAGATGATCTCCANAACAAGGAAGT
GAATGCTCTTCAGGTGGGTGCAATAATGTAAT

consensusID : consensus_6316#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 553
fasta sequence

                              [TCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGCTTGATGGCTACATTTTCTTGGATTGCGAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGTGTGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGATCTCCAAAACAAGGAAGTGAATGCTCTTCAGACACAAACCGTCACACCACTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACGTAAAGATGAAGAATCGTCACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGACAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTGTGATCGTATTTGTGAAGTTTCAAACAAAGAAAA]

[+] EMBL CD190986             [TCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGCTTGATGGCTACATTTTCTTGGATTGCGAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGTGTGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGA                                                                                                                                                                                                                                                                     ]
[-] EMBL CD145430             [                                                                      AAATGAGTCCTCTGCACTTGTAGAGTNTGCTGTTTGCCAGGTATTGGCGTGTGCTANAGGGTCTTCAGATGATAAT GGGGAGGGAAAGTGGATAAAAAACAGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGATCTCCAAAACAAGGAAGTGAATGCTCTTCAGACACAAACCGTCACACCACTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACGTAAAGATGAAGAATCGTCACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGACAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTGTGATCGTATTTGTGAAGTTTCAAACAAAGAAAA]




>consensus_6316#1
TCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGCTTGATGGCTACATTTTCTTGG
ATTGCGAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGT
GTGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACAGGGTTCTT
TATTGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGTTTGTGCCG
AAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGATCTCCAAA
ACAAGGAAGTGAATGCTCTTCAGACACAAACCGTCACACCACTTTTAACCTACCTAAATA
ACCGTGGTGGAGATATTAGACGTAAAGATGAAGAATCGTCACGTCACAGGCAGTTTAGAC
AAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGACAAATCTGTACGAAGTCATC
CACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTGTGATCGTATTTGTGAAGTTT
CAAACAAAGAAAA

consensusID : consensus_6316#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 498
fasta sequence

                              [NNACTTAGGTTTGCGGTGCAGATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAACTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGATCTCCAAAACAAGGAAGCGAATGCTCTTCAGACACAAACCGTCACACCACTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACGTAAAGATGAAGAATCATCACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGACAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTGTGATCGTATTTGTGAAGTTTCAAACAAAGAAAACCCTCACCATAACAGCACGGAAGATTTGACGGGGGTTGATC]

[-] EMBL CD133736             [NNACTTAGGTTTGCGGTGCAGATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAACTCGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGGAATCCATTTTAGATGATCTCCAAAACAAGGAAGCGAATGCTCTTCAGACACAAACCGTCACACCACTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACGTAAAGATGAAGAATCATCACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGACAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTGTGATCGTATTTGTGAAGTTTCAAACAAAGAAAACCCTCACCATAACAGCACGGAAGATTTGACGGGGGTTGATC]




>consensus_6316#2
NNACTTAGGTTTGCGGTGCAGATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACA
TTACATTCAACGACATGGGTTCTTTATTGAAAGACTCAGCGTATGTGAAATTCTTAAACT
CGCAATCTGCTGAAGTTTGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGGG
AATCCATTTTAGATGATCTCCAAAACAAGGAAGCGAATGCTCTTCAGACACAAACCGTCA
CACCACTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACGTAAAGATGAAGAAT
CATCACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAG
TGGACAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCT
CTTGTGATCGTATTTGTGAAGTTTCAAACAAAGAAAACCCTCACCATAACAGCACGGAAG
ATTTGACGGGGGTTGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6316#1      TCAACGACATGGATTCTCTATTCGACTTCAAAGAAAGGCTTGATGGCTACATTTTCTTGG 60
consensus_6316#2      ------------------------------------------------------------
consensus_6316#0      ---------------------TCGGCGGCCGATTCGGGTTTTGTGTCTCGAAATGGTCAG 39
                                                                                  

consensus_6316#1      ATTGCGAGGGAAATGAGTCCTCTGCACTTGTAGAGTTTGCTGTTTGCCAGGTATTGGCGT 120
consensus_6316#2      -------------------------------NNACTTAG--GTTTGC--GGTGCAGATGA 25
consensus_6316#0      GGGATTGTCTGCAAAGGTGGTTGTTAGGGGGCTGCCTCCCAAATTA---GGGGCCGATGA 96
                                                          *      **    **    *  * 

consensus_6316#1      GTGCTAAAGGG-----TCTTCAGATGATAATGGGGGAGGGAAAGTGGATAAAAAACA-GG 174
consensus_6316#2      CT--CATTGGG-----TGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGG 78
consensus_6316#0      TT-TCATCAGGATTGTTGACCCGCTACCCTCTCACACTTACTTTAGGTTTTGCGGTGCAG 155
                       *   *   **     *   * *                         *          *

consensus_6316#1      GTTCTTTATTGAAAGACTCAGCGT--ATGTGAAATTCTTAAGCTCGCAATCTGCTGAAGT 232
consensus_6316#2      GTTCTTTATTGAAAGACTCAGCGT--ATGTGAAATTCTTAAACTCGCAATCTGCTGAAGT 136
consensus_6316#0      ATGACTCATTGGGTGGTCTGGGGTTGACGCGGGTTTACATTACATTCAACGACATGGATT 215
                       *   * ****   *     * **  * * *   **      *   ***     ** * *

consensus_6316#1      TTGTGCCGAAATATCAGAA-----TCAGAGTCTAAAA------AAACTCCCTGGGAATCC 281
consensus_6316#2      TTGTGCCGAAATATCAGAA-----TCAGAGTCTAAAA------AAACTCCCTGGGAATCC 185
consensus_6316#0      CTCTATTCGACTTCAAAGAAAGGTTTGATGGCTACATTTTCTTGGATTGCGGGGTAATCC 275
                       * *     * *   *  *     *    * *** *         * * *  ** *****

consensus_6316#1      ATTTTAGATGATCTCCAAAACAAGGAAGTGAATGCTCTTCAGACACAAACCGTCACACCA 341
consensus_6316#2      ATTTTAGATGATCTCCAAAACAAGGAAGCGAATGCTCTTCAGACACAAACCGTCACACCA 245
consensus_6316#0      AAGTTTTTTAGTTACTCTTTCAGGGAAATGAGTCCTCTGCACTTGTAGAGTTT---GCTG 332
                      *  **   *  *  *     ** ****  ** * **** **     * *   *    *  

consensus_6316#1      CTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACG-TAAAGATGAAGAATCGTC 400
consensus_6316#2      CTTTTAACCTACCTAAATAACCGTGGTGGAGATATTAGACG-TAAAGATGAAGAATCATC 304
consensus_6316#0      TTTGCCAGGTATTGGCGTG--TGCTAAAGGGTCTTCAGATGATAATGGGGGAGGGAAAGT 390
                       **   *  **      *    *     * *   * *** * *** *  * **       

consensus_6316#1      ACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGA 460
consensus_6316#2      ACGTCACAGGCAGTTTAGACAAGGTAATGCATCTGCCATCAAGAAAACACTGAAAGTGGA 364
consensus_6316#0      GGATAAAAAACAGGGTTCTTTAT-TGAAAGACTCAGCGTATGTGAAATTCTTAAGCTCGC 449
                         * * *  ***  *     *  * *   *     * *     ***  ** **  * * 

consensus_6316#1      CAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTG 520
consensus_6316#2      CAAATCTGTACGAAGTCATCCACCAGTTAAGCGACCTCATGATATAAAGCGTATCTCTTG 424
consensus_6316#0      --AATCTGC-TGAAGTT-TGTGCCGAAATATCAGAATCAGAGTCTAAAAAAACTCCCTGN 505
                        ******   *****  *   **     * *    ***   * ****     ** **  

consensus_6316#1      TGATCGTATTTGTGAAGTTTC--AAACAAAGAA---AA---------------------- 553
consensus_6316#2      TGATCGTATTTGTGAAGTTTC--AAACAAAGAA---AACCCTCACCATAACAGCACGGAA 479
consensus_6316#0      GAATCCATTNTAGATGATCTCCANAACAAGGAAGTGAATGCTCTTCAGGTGGGTGCAATA 565
                        ***   * *      * **   ***** ***   **                      

consensus_6316#1      -------------------
consensus_6316#2      GATTTGACGGGGGTTGATC 498
consensus_6316#0      -ATGTAAT----------- 572