cluster # 6317

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Schistosoma mansoni
cluster # 6317 cluster # 6317 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6317#0 length = 654 sequences # 3

consensus_6317#1 length = 239 sequences # 1

consensusID : consensus_6317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 654
fasta sequence

                              [GTCGTAATACAAGGTAAGCTAAGTACCTATGTAATTGTTAAGATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACGTATCATGGGTCTTCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAGTTTTACAAAAGAACGTATCATCCCCTCTGTCCAGTACAACACTTCATAATTTGAAGCCCTATACTTGCTACACTTTGTACATTCGCGCTTTGAATGACATTGGTTGGAGTGAATTCAGTAAACCCAGTCACTCACTCACTCTTCCTGGTTTGCCCGTTGCTCATCCAGCAGTTCACATCATCAATGTATCTAGTCACTCAATTTCTCTAGATGTAGGTATCGCAACTTTAAAGGACGTCATTCAAGATAATGTCAAAAGATGTATAGATCAAGATGCTCGATTTATATCGTTACTACATGGCCCACTGGTCGGTTACATTGTCACGGTTGCTACAACTCAGCCTTACAAGTTTGCTTCAAAAACTTTATACAATGCATCTGGATCTTACTCTCAGATTGTAGATATATCCCATCTAAAGCCATACACACGGTACAATCTGTCGTTCGCTTTTTATAATGGTCGTTTTTCTGGCC]

[+] EMBL CD162977             [GTCGTAATACAAGGTAAGCTAAGTACCTATGTAATTGTTAAGATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACGTATCATGGGTCTTCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAGTTTTACAAAAGAACGTATCATCCCCTCTGTCCAGTACAACACTTCATAATTTGAAGCCCTATACTTGCTACACTTTGTACATTCGCGCTTTGAATGACATTGGTTGGAGTGAATTCAGTAAACCCAGTCACTCACTCACTCTTCCTGGTTTGCCCGTTGCTCATCCAGCAGTTCACATCATCAATGTATCTAGTCACTCAATTTCTCTAGATGTAGGTATCGCAACTTTAAAGGACGTCATTCAAGATAATGTCAAAAGATGTATAGATCAAGATGCTCGATTTATATCGTTACTACATGGCCCACTGGTCGGTTACATTGTCACGGTTGCTACAACTCAGCCTTACAAGTTTGCTTCAAAAACTTTATACAATGCATCTGGATCTTACTCTCAGATTGTAGATATATCCCATCTAAAGCCATAC                                                 ]
[+] EMBL CD162911             [                                                                                             CAATGAACGTATCATGGGTCTTCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAGTTTTACAAAAGAACGTATCATCCNCTCTGTCCAGTACAACACTTCATAATTTG                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD184918             [                                                                                                                                                                                                                                                  ACTTGCTACACTTTGTACATTCGCGCTTTGAATGACATTGGTTGGAGTGAATTCAGTAAACCCAGTCACTCACTCACTCTTCCTGGTTTGCCCGTTGCTCATCCAGCAGTTCACATCATCAATGTATCTAGTCACTCAATTTCTCTAGATGTAGGTATCGCAGCCTTAAAGGACGTCATTCAAGATAATGTCAAAAGATGTATAGATCAAGATGCTCGATTTATATCGTTACTACATGGCCCACTGGTCGGTTACATTGTCACGGTTGCTACAACTCAGCCTTACAAGTTTGCTTCAAAAACTTTATACAATGCATCTGGATCTTACTCTCAGATTGTAGATATATCCCATCTAAAGCCATACACACGGTACAATCTGTCGTTCGCTTTTTATAATGGTCGTTTTTCTGGCC]




>consensus_6317#0
GTCGTAATACAAGGTAAGCTAAGTACCTATGTAATTGTTAAGATAAACCGTTCTCTCCAA
CGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACGTATCATGGGTCTTCGGAA
ATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAG
TTTTACAAAAGAACGTATCATCCCCTCTGTCCAGTACAACACTTCATAATTTGAAGCCCT
ATACTTGCTACACTTTGTACATTCGCGCTTTGAATGACATTGGTTGGAGTGAATTCAGTA
AACCCAGTCACTCACTCACTCTTCCTGGTTTGCCCGTTGCTCATCCAGCAGTTCACATCA
TCAATGTATCTAGTCACTCAATTTCTCTAGATGTAGGTATCGCAACTTTAAAGGACGTCA
TTCAAGATAATGTCAAAAGATGTATAGATCAAGATGCTCGATTTATATCGTTACTACATG
GCCCACTGGTCGGTTACATTGTCACGGTTGCTACAACTCAGCCTTACAAGTTTGCTTCAA
AAACTTTATACAATGCATCTGGATCTTACTCTCAGATTGTAGATATATCCCATCTAAAGC
CATACACACGGTACAATCTGTCGTTCGCTTTTTATAATGGTCGTTTTTCTGGCC

consensusID : consensus_6317#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 239
fasta sequence

                              [GCCGATTGTTTCTTATTGGAGACTTGAAGTACCACCAGTCATTACTCGCCGTAATACAAGATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACGTATCATGGGTCTCCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAGTTTTACAAAAGAACGTATGTAAAACTACGGCCAGTGAAACA]

[-] EMBL CD200563             [GCCGATTGTTTCTTATTGGAGACTTGAAGTACCACCAGTCATTACTCGCCGTAATACAAGATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACGTATCATGGGTCTCCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTACATGACAATAATAGCCTAGTTTTACAAAAGAACGTATGTAAAACTACGGCCAGTGAAACA]




>consensus_6317#1
GCCGATTGTTTCTTATTGGAGACTTGAAGTACCACCAGTCATTACTCGCCGTAATACAAG
ATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACG
TATCATGGGTCTCCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTAC
ATGACAATAATAGCCTAGTTTTACAAAAGAACGTATGTAAAACTACGGCCAGTGAAACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6317#0      ---------------GTCGTAATACAAGGTAAGCTAAGTACCTAT--GTAATTGT-TAAG 42
consensus_6317#1      GCCGATTGTTTCTTATTGGAGACTTGAAGTACCACCAGTCATTACTCGCCGTAATACAAG 60
                                      * *  *    * ***     ***   **   *   *  *  ***

consensus_6317#0      ATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACG 102
consensus_6317#1      ATAAACCGTTCTCTCCAACGTCTATTGTCATCCAGGCACTATCTGAAAGCTCAATGAACG 120
                      ************************************************************

consensus_6317#0      TATCATGGGTCTTCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTAC 162
consensus_6317#1      TATCATGGGTCTCCGGAAATAGTCAAAATAGTCCCATTTCTCTTCATACTGTCTATTTAC 180
                      ************ ***********************************************

consensus_6317#0      ATGACAATAATAGCCTAGTTTTACAAAAGAACGTATCATCCCCTCTGTCCAGTACAACAC 222
consensus_6317#1      ATGACAATAATAGCCTAGTTTTACAAAAGAACGTATGTAAAACTACGGCCAGTGAAACA- 239
                      ************************************      **  * *****  **** 

consensus_6317#0      TTCATAATTTGAAGCCCTATACTTGCTACACTTTGTACATTCGCGCTTTGAATGACATTG 282
consensus_6317#1      ------------------------------------------------------------
                                                                                  

consensus_6317#0      GTTGGAGTGAATTCAGTAAACCCAGTCACTCACTCACTCTTCCTGGTTTGCCCGTTGCTC 342
consensus_6317#1      ------------------------------------------------------------
                                                                                  

consensus_6317#0      ATCCAGCAGTTCACATCATCAATGTATCTAGTCACTCAATTTCTCTAGATGTAGGTATCG 402
consensus_6317#1      ------------------------------------------------------------
                                                                                  

consensus_6317#0      CAACTTTAAAGGACGTCATTCAAGATAATGTCAAAAGATGTATAGATCAAGATGCTCGAT 462
consensus_6317#1      ------------------------------------------------------------
                                                                                  

consensus_6317#0      TTATATCGTTACTACATGGCCCACTGGTCGGTTACATTGTCACGGTTGCTACAACTCAGC 522
consensus_6317#1      ------------------------------------------------------------
                                                                                  

consensus_6317#0      CTTACAAGTTTGCTTCAAAAACTTTATACAATGCATCTGGATCTTACTCTCAGATTGTAG 582
consensus_6317#1      ------------------------------------------------------------
                                                                                  

consensus_6317#0      ATATATCCCATCTAAAGCCATACACACGGTACAATCTGTCGTTCGCTTTTTATAATGGTC 642
consensus_6317#1      ------------------------------------------------------------
                                                                                  

consensus_6317#0      GTTTTTCTGGCC 654
consensus_6317#1      ------------