cluster # 632

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Schistosoma mansoni
cluster # 632 cluster # 632 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_632#0 length = 351 sequences # 1

consensus_632#1 length = 193 sequences # 1

consensusID : consensus_632#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 351
fasta sequence

                              [TGGTTTGTTCTCTCCCTCAGTGGGCTGCTTCTGATGGTAATCGGTCAACGGACATTCAGTATCTTGAGTAGACAGTTATTTATAAATGCTTGTACTATTTGAAAATGGTTGTAGTAGTTCTCCAAGTTCCAGCTTCGTACAGTAGAACTGTCTTGACGTTCGTATTGAAGATTCTCGCTTTGATATTGGCTGACAGCTGTTTTTAGTTCTGTATTTTCCTCAACTGTAGGAATGCTGCCATTACTTTACCAATCCTTAACTTCACATCTGCGTCATACCCTCCTTGTTCATTGATGATGCTCTCTGGATATGTGGAAAGTTTCAAATCTCCCAGAGCTTTTCCATCTCTGT]

[+] EMBL CD196055             [TGGTTTGTTCTCTCCCTCAGTGGGCTGCTTCTGATGGTAATCGGTCAACGGACATTCAGTATCTTGAGTAGACAGTTATTTATAAATGCTTGTACTATTTGAAAATGGTTGTAGTAGTTCTCCAAGTTCCAGCTTCGTACAGTAGAACTGTCTTGACGTTCGTATTGAAGATTCTCGCTTTGATATTGGCTGACAGCTGTTTTTAGTTCTGTATTTTCCTCAACTGTAGGAATGCTGCCATTACTTTACCAATCCTTAACTTCACATCTGCGTCATACCCTCCTTGTTCATTGATGATGCTCTCTGGATATGTGGAAAGTTTCAAATCTCCCAGAGCTTTTCCATCTCTGT]




>consensus_632#0
TGGTTTGTTCTCTCCCTCAGTGGGCTGCTTCTGATGGTAATCGGTCAACGGACATTCAGT
ATCTTGAGTAGACAGTTATTTATAAATGCTTGTACTATTTGAAAATGGTTGTAGTAGTTC
TCCAAGTTCCAGCTTCGTACAGTAGAACTGTCTTGACGTTCGTATTGAAGATTCTCGCTT
TGATATTGGCTGACAGCTGTTTTTAGTTCTGTATTTTCCTCAACTGTAGGAATGCTGCCA
TTACTTTACCAATCCTTAACTTCACATCTGCGTCATACCCTCCTTGTTCATTGATGATGC
TCTCTGGATATGTGGAAAGTTTCAAATCTCCCAGAGCTTTTCCATCTCTGT

consensusID : consensus_632#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 193
fasta sequence

                              [GACCTGAAACAGCAACACAACAGTCAGGACAGACAAGTGCGTCTGAAGTGAGAACACGGTGTGATGGTGCAGCAGATATATTTGAAATTGAAATACGCGGTTTTTAATATCGTTATTCTGCAGGTTCAGACGACGTAGGGCTTGTTCTTCTTCTTCCAGTGCATTCACTCTTTGTTGTCAGTATTCAAATATA]

[+] EMBL CD185945             [GACCTGAAACAGCAACACAACAGTCAGGACAGACAAGTGCGTCTGAAGTGAGAACACGGTGTGATGGTGCAGCAGATATATTTGAAATTGAAATACGCGGTTTTTAATATCGTTATTCTGCAGGTTCAGACGACGTAGGGCTTGTTCTTCTTCTTCCAGTGCATTCACTCTTTGTTGTCAGTATTCAAATATA]




>consensus_632#1
GACCTGAAACAGCAACACAACAGTCAGGACAGACAAGTGCGTCTGAAGTGAGAACACGGT
GTGATGGTGCAGCAGATATATTTGAAATTGAAATACGCGGTTTTTAATATCGTTATTCTG
CAGGTTCAGACGACGTAGGGCTTGTTCTTCTTCTTCCAGTGCATTCACTCTTTGTTGTCA
GTATTCAAATATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_632#0      TGGTTTGTTCTCTCC-CTCAGTGGGCTGCTTCTGATGGTAATCGGTCAACGGACATTCAG 59
consensus_632#1      -GACCTGAAACAGCAACACAACAGTCAGGACAGACAAGTGCGTCTGAAGTGAGAACACGG 59
                      *   **      *  * **   * * *         **        *  *   *  * *

consensus_632#0      TATCTTGAGTAGACAGTTATTTATAAATGCTTGTACTATTTGAAAATGGTTGTAGTAGTT 119
consensus_632#1      TGTGATGGTGCAGCAGATATATTTGAAA--TTGAAATACGCGGTTTTTAATATCGTTATT 117
                     * *  **      *** *** * * **   *** * **   *    *   * * **  **

consensus_632#0      CTCCAAGTTCCAGCTTCGTACAGTAGAACTGTCTTGACGTTCGTATTGAAGATTCTCGCT 179
consensus_632#1      CTGCAGGTTCAGACGACGTAGGGC----TTGTTCT--TCTTCTTCCAGTGCATTCACTCT 171
                     ** ** ****   *  ****  *      ***  *    *** *   *   **** * **

consensus_632#0      TTGATATTGGCTGACAGCTGTTTTTAGTTCTGTATTTTCCTCAACTGTAGGAATGCTGCC 239
consensus_632#1      TTGTTGTCAGTATTCAAATATA-------------------------------------- 193
                     *** * *  *    **  * *                                       

consensus_632#0      ATTACTTTACCAATCCTTAACTTCACATCTGCGTCATACCCTCCTTGTTCATTGATGATG 299
consensus_632#1      ------------------------------------------------------------
                                                                                 

consensus_632#0      CTCTCTGGATATGTGGAAAGTTTCAAATCTCCCAGAGCTTTTCCATCTCTGT 351
consensus_632#1      ----------------------------------------------------