These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_632#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence [TGGTTTGTTCTCTCCCTCAGTGGGCTGCTTCTGATGGTAATCGGTCAACGGACATTCAGTATCTTGAGTAGACAGTTATTTATAAATGCTTGTACTATTTGAAAATGGTTGTAGTAGTTCTCCAAGTTCCAGCTTCGTACAGTAGAACTGTCTTGACGTTCGTATTGAAGATTCTCGCTTTGATATTGGCTGACAGCTGTTTTTAGTTCTGTATTTTCCTCAACTGTAGGAATGCTGCCATTACTTTACCAATCCTTAACTTCACATCTGCGTCATACCCTCCTTGTTCATTGATGATGCTCTCTGGATATGTGGAAAGTTTCAAATCTCCCAGAGCTTTTCCATCTCTGT] [+] EMBL CD196055 [TGGTTTGTTCTCTCCCTCAGTGGGCTGCTTCTGATGGTAATCGGTCAACGGACATTCAGTATCTTGAGTAGACAGTTATTTATAAATGCTTGTACTATTTGAAAATGGTTGTAGTAGTTCTCCAAGTTCCAGCTTCGTACAGTAGAACTGTCTTGACGTTCGTATTGAAGATTCTCGCTTTGATATTGGCTGACAGCTGTTTTTAGTTCTGTATTTTCCTCAACTGTAGGAATGCTGCCATTACTTTACCAATCCTTAACTTCACATCTGCGTCATACCCTCCTTGTTCATTGATGATGCTCTCTGGATATGTGGAAAGTTTCAAATCTCCCAGAGCTTTTCCATCTCTGT] consensusID : consensus_632#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence [GACCTGAAACAGCAACACAACAGTCAGGACAGACAAGTGCGTCTGAAGTGAGAACACGGTGTGATGGTGCAGCAGATATATTTGAAATTGAAATACGCGGTTTTTAATATCGTTATTCTGCAGGTTCAGACGACGTAGGGCTTGTTCTTCTTCTTCCAGTGCATTCACTCTTTGTTGTCAGTATTCAAATATA] [+] EMBL CD185945 [GACCTGAAACAGCAACACAACAGTCAGGACAGACAAGTGCGTCTGAAGTGAGAACACGGTGTGATGGTGCAGCAGATATATTTGAAATTGAAATACGCGGTTTTTAATATCGTTATTCTGCAGGTTCAGACGACGTAGGGCTTGTTCTTCTTCTTCCAGTGCATTCACTCTTTGTTGTCAGTATTCAAATATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_632#0 TGGTTTGTTCTCTCC-CTCAGTGGGCTGCTTCTGATGGTAATCGGTCAACGGACATTCAG 59 consensus_632#1 -GACCTGAAACAGCAACACAACAGTCAGGACAGACAAGTGCGTCTGAAGTGAGAACACGG 59 * ** * * ** * * * ** * * * * * consensus_632#0 TATCTTGAGTAGACAGTTATTTATAAATGCTTGTACTATTTGAAAATGGTTGTAGTAGTT 119 consensus_632#1 TGTGATGGTGCAGCAGATATATTTGAAA--TTGAAATACGCGGTTTTTAATATCGTTATT 117 * * ** *** *** * * ** *** * ** * * * * ** ** consensus_632#0 CTCCAAGTTCCAGCTTCGTACAGTAGAACTGTCTTGACGTTCGTATTGAAGATTCTCGCT 179 consensus_632#1 CTGCAGGTTCAGACGACGTAGGGC----TTGTTCT--TCTTCTTCCAGTGCATTCACTCT 171 ** ** **** * **** * *** * *** * * **** * ** consensus_632#0 TTGATATTGGCTGACAGCTGTTTTTAGTTCTGTATTTTCCTCAACTGTAGGAATGCTGCC 239 consensus_632#1 TTGTTGTCAGTATTCAAATATA-------------------------------------- 193 *** * * * ** * * consensus_632#0 ATTACTTTACCAATCCTTAACTTCACATCTGCGTCATACCCTCCTTGTTCATTGATGATG 299 consensus_632#1 ------------------------------------------------------------ consensus_632#0 CTCTCTGGATATGTGGAAAGTTTCAAATCTCCCAGAGCTTTTCCATCTCTGT 351 consensus_632#1 ---------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||