cluster # 6321

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Schistosoma mansoni
cluster # 6321 cluster # 6321 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6321#0 length = 788 sequences # 2

consensus_6321#1 length = 458 sequences # 1
consensus_6321#2 length = 199 sequences # 1

consensusID : consensus_6321#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 788
fasta sequence

                              [TCGAGCCAANAATTCGGCACGAGGGGTTGATTACACTTTATGATTAAAGCTATTGAATAAAAGGGATGATTTTCTATGCAAAGTACACAAAACTGATGGGCCACAGGGTATTTTTTTGATAGGTACTCAATTCATATAGCTTAGTATTTTTCACCTCAACAAATTCTAAACTGTGTTAAATATTTCCAACAAAAGCAGAATCAATTACTGAAATTTATCGACTGTAGTATTTCGTCAAAATAATGTAAGTAGAGATGTAAAGTAGTTTCAGAATGCCAAGATTAAAGTATGATGACCCACAAATTCACTTTTTTAAAATTTATTAGGAACTGTTATATTTAATTCTAGTTATATTTAAGACTATGATCCCCAAAATGACAACAATCGCATATTAATAAAATTAGCCAAATTATGCGTCTCGAAATTTATCATAATGAGCTTAGTGTATTCGTTATCTTTAACGAAGAAAACCATGAGTAGTCTAACTGTCCGTTGTAAGAATTCTACATAATGGTATTTATTTGTATATGAATTAATTAATTAATTTGCTGTTTTATATAGCTGAAATCATGGGTCAGTGGTCTATCAGTTAAGTGCTCTGGCGTGAGACTGGTANGTTCTGGGTTCGAATCTCACGAGGCGGGGTCGTGGATGCGCACAGCTGAGGAGTCCCGTAATAAGACGAAACGGCCGTCCAGTGCTCCAAGGTTTTCCATGGTGGTCTAGCTTCAATTGGCTCACTCTTTCAACTATGAAAAATAGTAAATCTTCACCAAAGACCCCCCATC]

[+] EMBL CD082721             [TCGAGCCAANAATTCGGCACGAGGGGTTGATTACACTTTATGATTAAAGCTATTGAATAAAAGGGATGATTTTCTATGCAAAGTACACAAAACTGATGGGCCACAGGGTATTTTTTTGATAGGTACTCAATTCATATAGCTTAGTATTTTTCACCTCAACAAATTCTAAACTGTGTTAAATATTTCCAACAAAAGCAGAATCAATTACTGAAATTTATCGACTGTAGTATTTCGTCAAAATAATGTAAGTAGAGATGTAAAGTAGTTTCAGAATGCCAAGATTAAAGTATGATGACCCACAAATTCACTTTTTTAAAATTTATTAGGAACTGTTATATTTAATTCTAGTTATATTTAAGACTATGATCCCCAAAATGACAACAATCGCATATTAATAAAATTAGCCAAATTATGCGTCTCGAAATTTATCATAATGAGCTTAGTGTATTCGTTATCTTTAACGAAGAAAACCATGAGTAGTCTAACTGTCCGTTGTAAGAATTCTACATAATGGTATTTATTTGTATATGAATTAATTAATTAATTTGCTGTTTTATATAGCTGAAATCATGGGTCAGTGGTCTATCAGTTAAGTGCTCTGGCGTGAGACTGGTANGTTCTGGGTTCGAATCTCACGAGGCGGG                                                                                                                                                ]
[-] EMBL BG930416             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           GGGTCAGTGGTCTATCGGATAAGTGCTCTGGCGTGAGACTGGTAGGTTCTGGGTTCGGATCTCACGAGGCGAGGTCGTGGATGCGCACAGCTGAGGAGTCCCGTAATAAGACGAAACGGCCGTCCAGTGCTCCAAGGTTTTCCATGGTGGTCTAGCTTCAATTGGCTCACTCTTTCAACTATGAAAAATAGTAAATCTTCACCAAAGACCCCCCATC]




>consensus_6321#0
TCGAGCCAANAATTCGGCACGAGGGGTTGATTACACTTTATGATTAAAGCTATTGAATAA
AAGGGATGATTTTCTATGCAAAGTACACAAAACTGATGGGCCACAGGGTATTTTTTTGAT
AGGTACTCAATTCATATAGCTTAGTATTTTTCACCTCAACAAATTCTAAACTGTGTTAAA
TATTTCCAACAAAAGCAGAATCAATTACTGAAATTTATCGACTGTAGTATTTCGTCAAAA
TAATGTAAGTAGAGATGTAAAGTAGTTTCAGAATGCCAAGATTAAAGTATGATGACCCAC
AAATTCACTTTTTTAAAATTTATTAGGAACTGTTATATTTAATTCTAGTTATATTTAAGA
CTATGATCCCCAAAATGACAACAATCGCATATTAATAAAATTAGCCAAATTATGCGTCTC
GAAATTTATCATAATGAGCTTAGTGTATTCGTTATCTTTAACGAAGAAAACCATGAGTAG
TCTAACTGTCCGTTGTAAGAATTCTACATAATGGTATTTATTTGTATATGAATTAATTAA
TTAATTTGCTGTTTTATATAGCTGAAATCATGGGTCAGTGGTCTATCAGTTAAGTGCTCT
GGCGTGAGACTGGTANGTTCTGGGTTCGAATCTCACGAGGCGGGGTCGTGGATGCGCACA
GCTGAGGAGTCCCGTAATAAGACGAAACGGCCGTCCAGTGCTCCAAGGTTTTCCATGGTG
GTCTAGCTTCAATTGGCTCACTCTTTCAACTATGAAAAATAGTAAATCTTCACCAAAGAC
CCCCCATC

consensusID : consensus_6321#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [GTGAGAGTAAGCAACCTTGCCTAACACCGGTCTTTACCTCGAATGAGTCGGTGAGTTGTTCTCCATGGACGATTTAATCCACCATAGGAGTTCCGTATGATATTGACTATCTTCTCAGGGTAATTCGTAGTTTATGAAAATCCGCGATAGACAGATTCGAGGCAGCCTAATTGTCCGACTAGTGACAATGACACTATGACAGCGAGTAGTATACGAACCAAGCTATGCTTTCAAAAATCTACCTTCACACAACAGAACCGCATTTCTCTATTGCCTGGTTAGGAGAAATTGTGTTGCCGGGTGGGAACACGGGGACTTCTTCGCTTTTCTTCGTAAATCAGGCAACTTTGGAACGTTGATATGAGAAGCCATACAGAGTAAGCCGAAGTATCAAGTACAAATATCAGCTACTGAGCACACTCGACAAAATACTTCTGANAATAAGCTTANATTTATGC]

[+] EMBL CD194211             [GTGAGAGTAAGCAACCTTGCCTAACACCGGTCTTTACCTCGAATGAGTCGGTGAGTTGTTCTCCATGGACGATTTAATCCACCATAGGAGTTCCGTATGATATTGACTATCTTCTCAGGGTAATTCGTAGTTTATGAAAATCCGCGATAGACAGATTCGAGGCAGCCTAATTGTCCGACTAGTGACAATGACACTATGACAGCGAGTAGTATACGAACCAAGCTATGCTTTCAAAAATCTACCTTCACACAACAGAACCGCATTTCTCTATTGCCTGGTTAGGAGAAATTGTGTTGCCGGGTGGGAACACGGGGACTTCTTCGCTTTTCTTCGTAAATCAGGCAACTTTGGAACGTTGATATGAGAAGCCATACAGAGTAAGCCGAAGTATCAAGTACAAATATCAGCTACTGAGCACACTCGACAAAATACTTCTGANAATAAGCTTANATTTATGC]




>consensus_6321#1
GTGAGAGTAAGCAACCTTGCCTAACACCGGTCTTTACCTCGAATGAGTCGGTGAGTTGTT
CTCCATGGACGATTTAATCCACCATAGGAGTTCCGTATGATATTGACTATCTTCTCAGGG
TAATTCGTAGTTTATGAAAATCCGCGATAGACAGATTCGAGGCAGCCTAATTGTCCGACT
AGTGACAATGACACTATGACAGCGAGTAGTATACGAACCAAGCTATGCTTTCAAAAATCT
ACCTTCACACAACAGAACCGCATTTCTCTATTGCCTGGTTAGGAGAAATTGTGTTGCCGG
GTGGGAACACGGGGACTTCTTCGCTTTTCTTCGTAAATCAGGCAACTTTGGAACGTTGAT
ATGAGAAGCCATACAGAGTAAGCCGAAGTATCAAGTACAAATATCAGCTACTGAGCACAC
TCGACAAAATACTTCTGANAATAAGCTTANATTTATGC

consensusID : consensus_6321#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [AATTTGGATATATAATTGTAGAACCTGAAGAGAATTTATCGAAAAGAATATTCTTCGTTCAAATAATTTACAATTAGAATTCTAAAATTCAACTTCTTTCTACACCAAGGAAAAACGAATCACTATTTGACAATAATAACAATAATGGTAATAGTAATAATAATAAACGGATGAAAATATCACACGATAATTAATGAAA]

[+] EMBL CD185537             [AATTTGGATATATAATTGTAGAACCTGAAGAGAATTTATCGAAAAGAATATTCTTCGTTCAAATAATTTACAATTAGAATTCTAAAATTCAACTTCTTTCTACACCAAGGAAAAACGAATCACTATTTGACAATAATAACAATAATGGTAATAGTAATAATAATAAACGGATGAAAATATCACACGATAATTAATGAAA]




>consensus_6321#2
AATTTGGATATATAATTGTAGAACCTGAAGAGAATTTATCGAAAAGAATATTCTTCGTTC
AAATAATTTACAATTAGAATTCTAAAATTCAACTTCTTTCTACACCAAGGAAAAACGAAT
CACTATTTGACAATAATAACAATAATGGTAATAGTAATAATAATAAACGGATGAAAATAT
CACACGATAATTAATGAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6321#0      TCGAGCCAANAATTCGGCACGAGGGGTTGATTACACTTTATGATTAAAGCTATTGAATAA 60
consensus_6321#2      ------------------------------------------------------------
consensus_6321#1      ------------------------------------------------------------
                                                                                  

consensus_6321#0      AAGGGATGATTTTCTATGCAAAGTACACAAAACTGATGGGCCACAGGGTATTTTTTTGAT 120
consensus_6321#2      ------------------------------------------------------------
consensus_6321#1      -------------------------------------------------------GTGAG 5
                                                                                  

consensus_6321#0      AGGTACTCAATTCATATAGCTTAGTATTTTTCACCTCAACAAATTCTAAACTGTGTTAAA 180
consensus_6321#2      ------------------------------------------------------------
consensus_6321#1      AGTAAGCAACCTTGCCTAACACCGGTCTTTACCTCGAATGAGTCGGTGAGTTGTTCTCCA 65
                                                                                  

consensus_6321#0      TATTTCCAACAAAAGCAGAATCAATTACTGAAATTTATCGACTGTAGTATTTCGTCAAAA 240
consensus_6321#2      ------------------------------------------------------------
consensus_6321#1      TGGACGATTTAATCCACCATAGGAGTTCCGTATGATATTGACTATCTTCTCAGGGTAATT 125
                                                                                  

consensus_6321#0      TAATGTAAGTAGAGAT-----GTAAAGTAGTTTCAGAATGCCAAGATTAAAGTATGATGA 295
consensus_6321#2      -------AATTTGGAT-----ATA---TAATTGTAGAACCTGAAGA---GAATTTATCGA 42
consensus_6321#1      CGTAGTTTATGAAAATCCGCGATAGACAGATTCGAGGCAGCCTAATTGTCCGACTAGTGA 185
                               *    **      **      **  **       *          *   **

consensus_6321#0      CCCACAAATTCACTTTTTTAA-AATTTATTA--GGAACTGTTATATTTAA-TTCTAGTTA 351
consensus_6321#2      AAAGAATATTCTTCGTTCAAATAATTTACAATTAGAATTCTAAAATTCAACTTCTTTCTA 102
consensus_6321#1      CAATGACACTATGACAGCGAGTAGTATACGAACCAAGCTATGCTTTCAAAAATCTACCTT 245
                           * * *         *  * * **  *    *  * *    *  **  ***   * 

consensus_6321#0      TATTTAAGACTA-TGATCCCCAAAATGACAACAATCGCA-TATTAATAAAATTAG-CCAA 408
consensus_6321#2      CACCAAGGAAAAACGAATCACTATTTGACAATAATAACAATAATGGTAATAGTAA-TAAT 161
consensus_6321#1      CACACAACAGAACCGCATTTCTCTATTGCCTGGTTAGGAGAAATTGTGTTGCCGGGTGGG 305
                       *   *  *  *  *     *    *  *     *   *  * *  *             

consensus_6321#0      ATTATGCGTC--TCGAAATTTATCATAATGAGCTTAGTGTATTCGTTATCTTTAACGAAG 466
consensus_6321#2      AATAAACGGA--TGAAAATATCACACGATAA--TTAATGAAA------------------ 199
consensus_6321#1      AACACGGGGACTTCTTCGCTTTTCTTCGTAAA-TCAGGCAACTTTGGAACGTTGATATGA 364
                      *  *   *    *       *  *    * *  * *    *                   

consensus_6321#0      AAAACCATGAGTAGTCTAACTGTCCGTTGTAAGAATTCTACATAATGGTATTTATTTGTA 526
consensus_6321#2      ------------------------------------------------------------
consensus_6321#1      GAAGCCATACAGAGTAAG-----CCGAAGTATCAAGTACAAATATCAGCTACTGAGCACA 419
                                                                                  

consensus_6321#0      TATGAATTAATTAATTAATTTGCTGTTTTATATAGCTGAAATCATGGGTCAGTGGTCTAT 586
consensus_6321#2      ------------------------------------------------------------
consensus_6321#1      CTCGACAAAATACTTCTGANAATAAGCTTANATTTATGC--------------------- 458
                                                                                  

consensus_6321#0      CAGTTAAGTGCTCTGGCGTGAGACTGGTANGTTCTGGGTTCGAATCTCACGAGGCGGGGT 646
consensus_6321#2      ------------------------------------------------------------
consensus_6321#1      ------------------------------------------------------------
                                                                                  

consensus_6321#0      CGTGGATGCGCACAGCTGAGGAGTCCCGTAATAAGACGAAACGGCCGTCCAGTGCTCCAA 706
consensus_6321#2      ------------------------------------------------------------
consensus_6321#1      ------------------------------------------------------------
                                                                                  

consensus_6321#0      GGTTTTCCATGGTGGTCTAGCTTCAATTGGCTCACTCTTTCAACTATGAAAAATAGTAAA 766
consensus_6321#2      ------------------------------------------------------------
consensus_6321#1      ------------------------------------------------------------
                                                                                  

consensus_6321#0      TCTTCACCAAAGACCCCCCATC 788
consensus_6321#2      ----------------------
consensus_6321#1      ----------------------