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Schistosoma mansoni
cluster # 6337 cluster # 6337       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6337#0 length = 968 sequences # 2  
consensus_6337#1 length = 630 sequences # 2  

consensusID : consensus_6337#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 968
fasta sequence
                              [TGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTAAAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAACAGGAGGCAATCCCAAATTATTTGGTGTAACAGAGGACGAATACGGAGTGGCTGAAGTGTCTGTAGAAAGTGGTGCACCTGTATTTACCCCAGATCGCCCAATATGAGGAATTTTGTTAAGTGATGTATTGGTTTCAGAAAAAACGCCACTGTTTACATTTTGAAGAGCCATTTTATAGGCAGTGACAGTTTCTAACAATTGCTCACGAGTAGTAGTTGCTACTAGCAGATCACTGCGTAATAATATGTTTCCCAAAGCGGTTATCACTCCAGGGAAGCCATCTATACGAGCAGCCTCCAAAATTAGTTGCGTATCCTTTGGAATTTCTTTCATAA]

[+] EMBL CD188987             [TGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCTTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD169748             [                                                                                                                                                                                                                                                                                                                                                                         TCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTAAAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAACAGGAGGCAATCCCAAATTATTTGGTGTAACAGAGGACGAATACGGAGTGGCTGAAGTGTCTGTAGAAAGTGGTGCACCTGTATTTACCCCAGATCGCCCAATATGAGGAATTTTGTTAAGTGATGTATTGGTTTCAGAAAAAACGCCACTGTTTACATTTTGAAGAGCCATTTTATAGGCAGTGACAGTTTCTAACAATTGCTCACGAGTAGTAGTTGCTACTAGCAGATCACTGCGTAATAATATGTTTCCCAAAGCGGTTATCACTCCAGGGAAGCCATCTATACGAGCAGCCTCCAAAATTAGTTGCGTATCCTTTGGAATTTCTTTCATAA]


>consensus_6337#0 TGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGA GATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTC ATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGG ATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAAC CCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGG AGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATG ATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATG AGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGACTGGGA AAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCAT TTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTAAAAAGTTCATT TCCTTCTGAAATAACAGAGTTACAGCCTTCAACAGGAGGCAATCCCAAATTATTTGGTGT AACAGAGGACGAATACGGAGTGGCTGAAGTGTCTGTAGAAAGTGGTGCACCTGTATTTAC CCCAGATCGCCCAATATGAGGAATTTTGTTAAGTGATGTATTGGTTTCAGAAAAAACGCC ACTGTTTACATTTTGAAGAGCCATTTTATAGGCAGTGACAGTTTCTAACAATTGCTCACG AGTAGTAGTTGCTACTAGCAGATCACTGCGTAATAATATGTTTCCCAAAGCGGTTATCAC TCCAGGGAAGCCATCTATACGAGCAGCCTCCAAAATTAGTTGCGTATCCTTTGGAATTTC TTTCATAA



consensusID : consensus_6337#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 630
fasta sequence
                              [CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGTAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTANAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAAACAGG]

[+] EMBL CD092242             [CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGTAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTANAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAAACAGG]
[+] EMBL CD092199             [CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTAa                                               ]


>consensus_6337#1 CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGA TTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTA AAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTA GTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATA TCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAG ACGAAGTCTTTCCCAGTAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAA CCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGG GTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAAT TGATAAGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCG AATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTANAAAGTTCATTTCCTTCT GAAATAACAGAGTTACAGCCTTCAAACAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6337#0      -----------------TGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGA 43
consensus_6337#1      CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGA 60
                                       *******************************************

consensus_6337#0      TTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTA 103
consensus_6337#1      TTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTA 120
                      ************************************************************

consensus_6337#0      AAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTA 163
consensus_6337#1      AAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTA 180
                      ************************************************************

consensus_6337#0      GTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATA 223
consensus_6337#1      GTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATA 240
                      ************************************************************

consensus_6337#0      TCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAG 283
consensus_6337#1      TCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAG 300
                      ************************************************************

consensus_6337#0      ACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAA 343
consensus_6337#1      ACGAAGTCTTTCCCAGTAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAA 360
                      **************** *******************************************

consensus_6337#0      CCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGG 403
consensus_6337#1      CCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGG 420
                      ************************************************************

consensus_6337#0      GTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAAT 463
consensus_6337#1      GTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAAT 480
                      ************************************************************

consensus_6337#0      TGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCT 523
consensus_6337#1      TGATAAGTAG------------------------TTACACGACGTTTTGGTTTAACTTCT 516
                      **********                        **************************

consensus_6337#0      TCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTT 583
consensus_6337#1      TCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTT 576
                      ************************************************************

consensus_6337#0      CCTGTAAAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAA-CAGGAGGCAA 642
consensus_6337#1      CCTGTANAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAAACAGG------ 630
                      ****** ****************************************** ****      

consensus_6337#0      TCCCAAATTATTTGGTGTAACAGAGGACGAATACGGAGTGGCTGAAGTGTCTGTAGAAAG 702
consensus_6337#1      ------------------------------------------------------------
                                                                                  

consensus_6337#0      TGGTGCACCTGTATTTACCCCAGATCGCCCAATATGAGGAATTTTGTTAAGTGATGTATT 762
consensus_6337#1      ------------------------------------------------------------
                                                                                  

consensus_6337#0      GGTTTCAGAAAAAACGCCACTGTTTACATTTTGAAGAGCCATTTTATAGGCAGTGACAGT 822
consensus_6337#1      ------------------------------------------------------------
                                                                                  

consensus_6337#0      TTCTAACAATTGCTCACGAGTAGTAGTTGCTACTAGCAGATCACTGCGTAATAATATGTT 882
consensus_6337#1      ------------------------------------------------------------
                                                                                  

consensus_6337#0      TCCCAAAGCGGTTATCACTCCAGGGAAGCCATCTATACGAGCAGCCTCCAAAATTAGTTG 942
consensus_6337#1      ------------------------------------------------------------
                                                                                  

consensus_6337#0      CGTATCCTTTGGAATTTCTTTCATAA 968
consensus_6337#1      --------------------------
                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)