These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6337#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 968 fasta sequence [TGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTAAAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAACAGGAGGCAATCCCAAATTATTTGGTGTAACAGAGGACGAATACGGAGTGGCTGAAGTGTCTGTAGAAAGTGGTGCACCTGTATTTACCCCAGATCGCCCAATATGAGGAATTTTGTTAAGTGATGTATTGGTTTCAGAAAAAACGCCACTGTTTACATTTTGAAGAGCCATTTTATAGGCAGTGACAGTTTCTAACAATTGCTCACGAGTAGTAGTTGCTACTAGCAGATCACTGCGTAATAATATGTTTCCCAAAGCGGTTATCACTCCAGGGAAGCCATCTATACGAGCAGCCTCCAAAATTAGTTGCGTATCCTTTGGAATTTCTTTCATAA] [+] EMBL CD188987 [TGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCTTCCG ] [-] EMBL CD169748 [ TCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTAAAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAACAGGAGGCAATCCCAAATTATTTGGTGTAACAGAGGACGAATACGGAGTGGCTGAAGTGTCTGTAGAAAGTGGTGCACCTGTATTTACCCCAGATCGCCCAATATGAGGAATTTTGTTAAGTGATGTATTGGTTTCAGAAAAAACGCCACTGTTTACATTTTGAAGAGCCATTTTATAGGCAGTGACAGTTTCTAACAATTGCTCACGAGTAGTAGTTGCTACTAGCAGATCACTGCGTAATAATATGTTTCCCAAAGCGGTTATCACTCCAGGGAAGCCATCTATACGAGCAGCCTCCAAAATTAGTTGCGTATCCTTTGGAATTTCTTTCATAA] consensusID : consensus_6337#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 630 fasta sequence [CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGTAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTANAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAAACAGG] [+] EMBL CD092242 [CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGTAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTANAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAAACAGG] [+] EMBL CD092199 [CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGATTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTAAAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTAGTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATATCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAGACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAACCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGGGTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAATTGATAAGTAGTTACACGACGTTTTGGTTTAACTTCTTCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTTCCTGTAa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6337#0 -----------------TGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGA 43 consensus_6337#1 CTAACTGGGCGTTTCATTGTAAAGCTTGGCCACTTTTTATGTGGTTGTTGACTTGCTTGA 60 ******************************************* consensus_6337#0 TTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTA 103 consensus_6337#1 TTACATGGAGATATTGAGATAGATAACTGAGCATCGGTTCGTACAGATTGATCTGTACTA 120 ************************************************************ consensus_6337#0 AAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTA 163 consensus_6337#1 AAAGTTGACGTAGGTTCATGTGTTAATGAATCCTTAGCCCATCCTTCATCCCGAGCGCTA 180 ************************************************************ consensus_6337#0 GTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATA 223 consensus_6337#1 GTGTTGAATTTCCTTGGATCTTGGAGAGCAAGCAAAAATTCGTGCTGCATATGCTGAATA 240 ************************************************************ consensus_6337#0 TCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAG 283 consensus_6337#1 TCACGTAACTGTACAACCCATGCTTCTCTATTCGAACAAGTAATAGGATCAATAACATAG 300 ************************************************************ consensus_6337#0 ACGAAGTCTTTCCCAGGAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAA 343 consensus_6337#1 ACGAAGTCTTTCCCAGTAGTTTGGTCTAAAATTGCAAACCGCAAATCGTCAGGTGAGTAA 360 **************** ******************************************* consensus_6337#0 CCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGG 403 consensus_6337#1 CCACTGCATAAAAGATGATCAATAGTTGCAGCTTCTGAATTTATGTGACCACTCGAAAGG 420 ************************************************************ consensus_6337#0 GTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAAT 463 consensus_6337#1 GTACAGTTGTACCAATGAGATTCATAACGCATTTTGTTGACATTTATAGCAGCTTTAAAT 480 ************************************************************ consensus_6337#0 TGATAAGTAGACTGGGAAAATGTATCACTGGTAGTTACACGACGTTTTGGTTTAACTTCT 523 consensus_6337#1 TGATAAGTAG------------------------TTACACGACGTTTTGGTTTAACTTCT 516 ********** ************************** consensus_6337#0 TCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTT 583 consensus_6337#1 TCCGTTACGAGTAGCATTTGCTCGAATAAAAACAAACGTGATTCTACAAACTTTAGATTT 576 ************************************************************ consensus_6337#0 CCTGTAAAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAA-CAGGAGGCAA 642 consensus_6337#1 CCTGTANAAAGTTCATTTCCTTCTGAAATAACAGAGTTACAGCCTTCAAACAGG------ 630 ****** ****************************************** **** consensus_6337#0 TCCCAAATTATTTGGTGTAACAGAGGACGAATACGGAGTGGCTGAAGTGTCTGTAGAAAG 702 consensus_6337#1 ------------------------------------------------------------ consensus_6337#0 TGGTGCACCTGTATTTACCCCAGATCGCCCAATATGAGGAATTTTGTTAAGTGATGTATT 762 consensus_6337#1 ------------------------------------------------------------ consensus_6337#0 GGTTTCAGAAAAAACGCCACTGTTTACATTTTGAAGAGCCATTTTATAGGCAGTGACAGT 822 consensus_6337#1 ------------------------------------------------------------ consensus_6337#0 TTCTAACAATTGCTCACGAGTAGTAGTTGCTACTAGCAGATCACTGCGTAATAATATGTT 882 consensus_6337#1 ------------------------------------------------------------ consensus_6337#0 TCCCAAAGCGGTTATCACTCCAGGGAAGCCATCTATACGAGCAGCCTCCAAAATTAGTTG 942 consensus_6337#1 ------------------------------------------------------------ consensus_6337#0 CGTATCCTTTGGAATTTCTTTCATAA 968 consensus_6337#1 -------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||