These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6340#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 561 fasta sequence [TTTAATATTGGACATTGTTAAAGATTTCTGAGTTCTCTTTAAATTGAGTTTCGTTCTTGATTATGTTTTCCTTTCACTAAAAAAACAAAAAATATTAGATTACAGGTTTTGTGAAAAATTCAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGAAATAAACGACATGCATGGGAGAAAGCAGTTAGAGAAGGTCAAACAGATGAACCACTATTCACGCCAGTTTGGTTTTCACCAAAACAAGATGTCCATGGTAATCTATATCATGAATATTTAGGAAACTATTGGGAATCAAAAGAAC] [-] EMBL CD185460 [TTTAATATTGGACATTGTTAAAGATTTCTGAGTTCTCTTTAAATTGAGTTTCGTTCTTGATTATGTTTTCCTTTCACTAAAAAAACAAAAAATATTAGATTACAGGTTTTGTGAAAAATTCAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAG ] [+] EMBL CD084394 [ gGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGAAATAAACGACATGCATGGGAGAAAGCAGTTAGAGAAGGTCAAACAGATGAACCACTATTCACGCCAGTTTGGTTTTCACCAAAACAAGATGTCCATGGTAATCTATATCATGAATATTTAGGAAACTATTGGGAATCAAAAGAAC] [+] EMBL CD145968 [ CTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGAAATAAACG ] consensusID : consensus_6340#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [TTATTTTAATAGAGGACAGTCAAGAAGAATTACAGGTTTTGTGAAAAATTCAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGA] [+] EMBL CD114650 [TTATTTTAATAGAGGACAGTCAAGAAGAATTACAGGTTTTGTGAAAAATTCAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAACGTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCATTACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAATGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAACAAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6340#0 TTTAATATTGGACATTGTTAAAGATTTCTGAGTTCTCTTTAAATTGAGTTTCGTTCTTGA 60 consensus_6340#1 ------------------------------------------------------------ consensus_6340#0 TTATGTTTTCCTTTCACTAAAAAAACAAAAAATATTAGATTACAGGTTTTGTGAAAAATT 120 consensus_6340#1 --------TTATTTTAATAGAGGACAGTCAAGAA--GAATTACAGGTTTTGTGAAAAATT 50 * *** * ** * * ** * ********************** consensus_6340#0 CAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAAC 180 consensus_6340#1 CAACTGGTTTACCAGTTGCTGTAATTCAAGGAACGTGGGATAGTTATTTAGAATATCAAC 110 ************************************************************ consensus_6340#0 GTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCAT 240 consensus_6340#1 GTTTATCAATCGATAAAGTACCTGTCGGTGAGTCGGTATTATTATGGAAACCTGATCCAT 170 ************************************************************ consensus_6340#0 TACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAA 300 consensus_6340#1 TACCTCCAAATGCTTCTGATATGTATCACTTTTCTCGATTTGCTATTGAATTAAATGAAA 230 ************************************************************ consensus_6340#0 TGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAAC 360 consensus_6340#1 TGGAAGATGGTGTTGCACCGACTGACTCAAGACGTAGACCTGATCAACGTCTTATGGAAC 290 ************************************************************ consensus_6340#0 AAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGAAATA 420 consensus_6340#1 AAGGATTGTGGGATCAAGCAAATGAAGAAAAAAGGCGCCTTGAAGCGAAACAAAGA---- 346 ******************************************************** consensus_6340#0 AACGACATGCATGGGAGAAAGCAGTTAGAGAAGGTCAAACAGATGAACCACTATTCACGC 480 consensus_6340#1 ------------------------------------------------------------ consensus_6340#0 CAGTTTGGTTTTCACCAAAACAAGATGTCCATGGTAATCTATATCATGAATATTTAGGAA 540 consensus_6340#1 ------------------------------------------------------------ consensus_6340#0 ACTATTGGGAATCAAAAGAAC 561 consensus_6340#1 --------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||