cluster # 6341

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Schistosoma mansoni
cluster # 6341 cluster # 6341 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6341#0 length = 498 sequences # 2

consensus_6341#1 length = 350 sequences # 1
consensus_6341#2 length = 181 sequences # 1

consensusID : consensus_6341#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 498
fasta sequence

                              [GGTGCCGCTTTTTCATTTTCCTATGTTCTGGTGTACGATGATCCACATTTACAGAGTTGCGTGGGTCCAGAAGGTCAAATTCAGGGTGTAAACCATTCATCAAACATAAATCTGAACCAATCGATGGGGATGCGTTTGCAGGAGAGTCGATCAACTTAAAATCAATATTGTGAGTCTCATAATCGCCTTCTAAAGCATTTTCATGGTCGACAGGTAGAAGAACAGCTGTGAGCAACTCCCATAAGATCAATCCCAAAGAATATATATCGGTACGTAGTANAGCCCACCCAGTGAAAGATATAGCACCATCAATAATTTCTGGGGCCTGATATCGTAAAGTGCCAGCCT-TCGGCATAGACTCCTAATAACGAATTATTACTTTGCTGTGAGATAAAATAAAAGATGATACACACATGAATTCAGCATTTATTAGAAAAGAACCTACTTTTTGAGTGGCTATCTTTACTCCCTTTACTTGTTCATTTGTGAGCCTGAGTA]

[+] EMBL CD194011             [GGTGCCGCTTTTTCATTTTCCTATGTTCTGGTGTACGATGATCCACATTTACAGAGTTGCGTGGGTCCAGAAGGTCAAATTCAGGGTGTAAACCATTCATCAAACATAAATCTGAACCAATCGATGGGGATGCGTTTGCAGGAGAGTCGATCAACTTAAAATCAATATTGTGAGTCTCATAATCGCCTTCTAAAGCATTTTCATGGTCGACAGGTAGAAGAACAGCTGTGAGCAACTCCCATAAGATCAATCCCAAAGAATATATATCGGTACGTAGTANAGCCCACCCAGTGAAAGATATAGCACCATCAATAATTTCTGGGGCCTGATATCGTAAAGTGCCAGCCT TCGGCATAGACTCC                                                                                                                                        ]
[+] EMBL CD131632             [                            TGGTGTACGATGATCCACATTTACAGAGTTGCGTGGGTCCAGAAGGTCAAATTCAGGGTGTAAACCACTCATCAAACATAAATCCGAACCAATCGATGGGGATGCGTTTGCAGGAGAGTCGATCAACTTAAAATCAATATTGTGAGTCTCATAATCGCCTTCTAAAGCATTTTCATGGTCAACAGGTAGAAGAACAGCTGTGAGCAACTCCCATAAGATCAATCCCAAAGAATATATATCGGTACGTAGTAAAGCCCACCCAGTGAAAGATATAGCACCATCAATAATTTCTGGGGCCTGATATCGTAAAGTGCCAGCCTATTGGCGAAAAATTATAATAACGAATTATTACTTTGCTGTGAGATAAAATAAAAGATGATACACACATGAATTCAGCATTTATTAGAAAAGAACCTACTTTTTGAGTGGCTATCTTTACTCCCTTTACTTGTTCATTTGTGAGCCTGAGTA]




>consensus_6341#0
GGTGCCGCTTTTTCATTTTCCTATGTTCTGGTGTACGATGATCCACATTTACAGAGTTGC
GTGGGTCCAGAAGGTCAAATTCAGGGTGTAAACCATTCATCAAACATAAATCTGAACCAA
TCGATGGGGATGCGTTTGCAGGAGAGTCGATCAACTTAAAATCAATATTGTGAGTCTCAT
AATCGCCTTCTAAAGCATTTTCATGGTCGACAGGTAGAAGAACAGCTGTGAGCAACTCCC
ATAAGATCAATCCCAAAGAATATATATCGGTACGTAGTANAGCCCACCCAGTGAAAGATA
TAGCACCATCAATAATTTCTGGGGCCTGATATCGTAAAGTGCCAGCCTTCGGCATAGACT
CCTAATAACGAATTATTACTTTGCTGTGAGATAAAATAAAAGATGATACACACATGAATT
CAGCATTTATTAGAAAAGAACCTACTTTTTGAGTGGCTATCTTTACTCCCTTTACTTGTT
CATTTGTGAGCCTGAGTA

consensusID : consensus_6341#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 350
fasta sequence

                              [AGGTCAAATTCAGGGTGTAAACCATTCATCAAACATAAATCTGAACCAATCGATGNGGATGCGTNTGCAGGAGAGTCGATCAACTTAAAATCAATATTGTGAGTCTCATAATCGCCTTCTAAAGCATTTTCATGGTCAACAGGTAGAAGAACAGCTGTGAGCAACTCCCATAAGATCAATCCCAAAGAATATATATCGGTACGTAGTAAAGCCCACCCAGTGAAAGATATAGCACCATCAATAATTTCTGGGGCCTGATATCGTAAAGTGCCAGCCTTCGGCATAGACTCCAATGCTGAGCTAACTGAATACGTCGTAGTCAACACATCTTGTAATGATGTTCCACACGA]

[-] EMBL CD181295             [AGGTCAAATTCAGGGTGTAAACCATTCATCAAACATAAATCTGAACCAATCGATGNGGATGCGTNTGCAGGAGAGTCGATCAACTTAAAATCAATATTGTGAGTCTCATAATCGCCTTCTAAAGCATTTTCATGGTCAACAGGTAGAAGAACAGCTGTGAGCAACTCCCATAAGATCAATCCCAAAGAATATATATCGGTACGTAGTAAAGCCCACCCAGTGAAAGATATAGCACCATCAATAATTTCTGGGGCCTGATATCGTAAAGTGCCAGCCTTCGGCATAGACTCCAATGCTGAGCTAACTGAATACGTCGTAGTCAACACATCTTGTAATGATGTTCCACACGA]




>consensus_6341#1
AGGTCAAATTCAGGGTGTAAACCATTCATCAAACATAAATCTGAACCAATCGATGNGGAT
GCGTNTGCAGGAGAGTCGATCAACTTAAAATCAATATTGTGAGTCTCATAATCGCCTTCT
AAAGCATTTTCATGGTCAACAGGTAGAAGAACAGCTGTGAGCAACTCCCATAAGATCAAT
CCCAAAGAATATATATCGGTACGTAGTAAAGCCCACCCAGTGAAAGATATAGCACCATCA
ATAATTTCTGGGGCCTGATATCGTAAAGTGCCAGCCTTCGGCATAGACTCCAATGCTGAG
CTAACTGAATACGTCGTAGTCAACACATCTTGTAATGATGTTCCACACGA

consensusID : consensus_6341#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 181
fasta sequence

                              [GTCTGATATCGTAAAGTGCCAGCCTTCGGCATAGACTCCAATGCTGAGCTAACTGAATACGTCGTAGTCAACACATCTTGTAATATTTGATGTCGGACTATTGGGTGAATTTTCTGCCAAGCATACAGATTGTCCGAAATCCGACAAACAAACAGTTCCATCAAAACGTATTAATATATTT]

[+] EMBL BG930448             [GTCTGATATCGTAAAGTGCCAGCCTTCGGCATAGACTCCAATGCTGAGCTAACTGAATACGTCGTAGTCAACACATCTTGTAATATTTGATGTCGGACTATTGGGTGAATTTTCTGCCAAGCATACAGATTGTCCGAAATCCGACAAACAAACAGTTCCATCAAAACGTATTAATATATTT]




>consensus_6341#2
GTCTGATATCGTAAAGTGCCAGCCTTCGGCATAGACTCCAATGCTGAGCTAACTGAATAC
GTCGTAGTCAACACATCTTGTAATATTTGATGTCGGACTATTGGGTGAATTTTCTGCCAA
GCATACAGATTGTCCGAAATCCGACAAACAAACAGTTCCATCAAAACGTATTAATATATT
T

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6341#0      GGTGCCGCTTTTTCATTTTCCTATGTTCTGGTGTACGATGATCCACATTTACAGAGTTGC 60
consensus_6341#1      ------------------------------------------------------------
consensus_6341#2      ------------------------------------------------------------
                                                                                  

consensus_6341#0      GTGGGTCCAGAAGGTCAAATTCAGGGTGTAAACCATTCATCAAACATAAATCTGAACCAA 120
consensus_6341#1      -----------AGGTCAAATTCAGGGTGTAAACCATTCATCAAACATAAATCTGAACCAA 49
consensus_6341#2      ------------------------------------------------------------
                                                                                  

consensus_6341#0      TCGATGGGGATGCGTTTGCAGGAGAGTCGATCAACTTAAAATCAATATTGTGAGTCTCAT 180
consensus_6341#1      TCGATGNGGATGCGTNTGCAGGAGAGTCGATCAACTTAAAATCAATATTGTGAGTCTCAT 109
consensus_6341#2      ------------------------------------------------------------
                                                                                  

consensus_6341#0      AATCGCCTTCTAAAGCATTTTCATGGTCGACAGGTAGAAGAACAGCTGTGAGCAACTCCC 240
consensus_6341#1      AATCGCCTTCTAAAGCATTTTCATGGTCAACAGGTAGAAGAACAGCTGTGAGCAACTCCC 169
consensus_6341#2      ------------------------------------------------------------
                                                                                  

consensus_6341#0      ATAAGATCAATCCCAAAGAATATATATCGGTACGTAGTANAGCCCACCCAGTGAAAGATA 300
consensus_6341#1      ATAAGATCAATCCCAAAGAATATATATCGGTACGTAGTAAAGCCCACCCAGTGAAAGATA 229
consensus_6341#2      ------------------------------------------------------------
                                                                                  

consensus_6341#0      TAGCACCATCAATAATTTCTGGGGCCTGATATCGTAAAGTGCCAGCCTTCGGCATAGACT 360
consensus_6341#1      TAGCACCATCAATAATTTCTGGGGCCTGATATCGTAAAGTGCCAGCCTTCGGCATAGACT 289
consensus_6341#2      -----------------------GTCTGATATCGTAAAGTGCCAGCCTTCGGCATAGACT 37
                                             * ***********************************

consensus_6341#0      CCTAATAACGAATTA--TTACTTTGCTGTGA--GATAAAATAAAAGATGAT--ACAC-AC 413
consensus_6341#1      CC-AATGCTGAGCTAACTGAATACGTCGTAGTCAACACATCTTGTAATGAT--GTTCCAC 346
consensus_6341#2      CC-AATGCTGAGCTAACTGAATACGTCGTAGTCAACACATCTTGTAATATTTGATGTCGG 96
                      ** ***   **  **  * * *  *  **     * * *       **  *         

consensus_6341#0      ATGAATTCAGCATTTATTAGAAAAGAACCTACTTTTTGAGTGGCTATCTTTACTCCCT-T 472
consensus_6341#1      ACGA-------------------------------------------------------- 350
consensus_6341#2      ACTATTGGGTGAATTTTCTGCCAAGCATACAGATTGTCCGAAATCCGACAAACAAACAGT 156
                      *  *                                                        

consensus_6341#0      TACTTGTTCATTTGTGAGCCTGAGTA 498
consensus_6341#1      --------------------------
consensus_6341#2      TCCATCAAAACGTATTAATATATTT- 181