These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6342#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 602 fasta sequence [TCAATCCTCTCCCATTGTTAGTAAGAGATTTGT-GGATTCTATACTATTAAGGAAATTGCTCCACAATTCACGTTTAAATTTTTCGGCAATGATGTCACTACATTCAAAGTACATACTGGAGGTGTATTAGAAATGTACGGTGAAAAGAATTTAGGAGCATTTGACACTTATGTAACAGGCAATTTTGAGGTTGATTCTGAGGTTTGGAGTGACAATGAATCCTTAGCTGTCAAATGGTCTTTTCATACATCAGATAAAAATACACGTCTTACGTTCATTGTAACTACTCTTATACATTCGAATGGGAAAATATTATTCTATTACGAAGGCATTTCTAAGGGAATCAAGGAAATGCAACGGCAATTAACCTTCCGTGGTGAGATTCC-GTGTGGAAACCAGAATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGTATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAATGATAACGATATTCGTGATTTAAA] [+] EMBL CD164498 [TCAATCCTCTCCCATTGTTAGTAAGAGATTTGT GGATTCTATACTATTAAGGAAATTGCTCCACAATTCACGTTTAAATTTTTCGGCAATGATGTCACTACATTCAAAGTACATACTGGAGGTGTATTAGAAATGTACGGTGAAAAGAATTTAGGAGCATTTGACACTTATGTAACAGGCAATTTTGAGGTTGATTCTGAGGTTTGGAGTGACAATGAATCCTTAGCTGTCAAATGGTCTTTTCATACATCAGATAAAAATACACGTCTTACGTTCATTGTAACTACTCTTATACATTCGAATGGGAAAATATTATTCTATTACGAAGGCATTTCTAAGGGAATCAAGGAAATGCAACGGCAATTAACCTTCCGTGGTGAGATTCC GTGTGGAAACCAGAATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCANGACGCAAAGTCGTCGAATGAAATGTGTATT ] [+] EMBL CD156944 [ TTGTTAGTAAGAGATTTGTGGGATTCTATACTATTAAGGAAATTGCTCCACAATTCACGTTTAAATTTTTCGGCAATGATGTCACTACATTCAAAGTACATACTGGAGGTGTATTAGAAATGTACGGTGAAAAGAATTTAGGAGCATTTGACACTTATGTAACAGGCAATTTTGAGGTTGATTCTGAGGTTTGGAGTGACAATGAATCCTTAGCTGTCAAATGGTCTTTTCATACATCAGATAAAAATACACGTCTTACGTTCATTGTAACTACTCTTATACATTCGAATGGGAAAATATTATTCTATTATGAGGGCATTTCTAAGGGAATCAAGGAAATGCAACGGCAATTAACCTTCCGTGGTGAGATTCC GTGTGGAAACCAGAATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCANAGTCGTCGAATGAAATGTGTATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAATGATAACGATATTCGTGATTTAAA] [+] EMBL CD164357 [ CCGTGGTGAGATTCCTGTGTGGAAACCAGAATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGTATT ] consensusID : consensus_6342#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [GGGATGTTGTTTAAACTCTTTTTTATCCGTAATCAGCAATTAAACACTTCCTTATTTTGAATGCTCCTTAATCGAGCTAACACCTTGTTTTGCACAAAATATAAATCGAAATCTCAAGTGTCTACTTTGTACATCTCATCACATTAGATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGTATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAACGATAACGATATTCGTGATTTCAAATTAAATGGTTGTCGGGTTAAAAATAACTTGAATGTAGACGCTCCGAGTGAATCAACACTTAACAAACAAGAAAAAACAAATGAAGAACT] [-] EMBL CD121251 [GGGATGTTGTTTAAACTCTTTTTTATCCGTAATCAGCAATTAAACACTTCCTTATTTTGAATGCTCCTTAATCGAGCTAACACCTTGTTTTGCACAAAATATAAATCGAAATCTCAAGTGTCTACTTTGTACATCTCATCACATTAGATAACAGAAGGATCAGTGTATTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGATTGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGTATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAACGATAACGATATTCGTGATTTCAAATTAAATGGTTGTCGGGTTAAAAATAACTTGAATGTAGACGCTCCGAGTGAATCAACACTTAACAAACAAGAAAAAACAAATGAAGAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6342#0 TCAATCCTCTCCCATTGTTAGTAAGAGATTTGTGGATTCTATACTATTAAGGAAATTGCT 60 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 CCACAATTCACGTTTAAATTTTTCGGCAATGATGTCACTACATTCAAAGTACATACTGGA 120 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 GGTGTATTAGAAATGTACGGTGAAAAGAATTTAGGAGCATTTGACACTTATGTAACAGGC 180 consensus_6342#1 ------------------------------------------------------------ consensus_6342#0 AATTTTGAGGTTGATTCTGAGGTTTGGAGTGACAATGAATCCTTAGCTGTCAAATGGTCT 240 consensus_6342#1 -----------------------------------GGGAT-----GTTGTTTAAACTCTT 20 * ** * *** ** * consensus_6342#0 TTTCATACATCAGATAAAAATACACGTCTTACGTTCATTGTAACTACTCTTATACATTCG 300 consensus_6342#1 TTTTATCCGTAATCAGCAATTAAACACTTC---CTTATTTTGAATGCTCCT---TAATCG 74 *** ** * * * ** ** ** * * *** * * * *** * * *** consensus_6342#0 AATGGGAAAATATTATTCTATTACGAAGGCATTTCTAAGGGAATCAAGGAAATGCAACGG 360 consensus_6342#1 AGC--TAACACCTTGTTTTGC-ACAAA---------ATATAAATCGA--------AATCT 114 * ** * ** ** * ** ** * **** * ** consensus_6342#0 CAATTAACCTTCCGTGGTGAGATTCCGTGTGGAAACCAGAATAACAGAAGGATCAGTGTA 420 consensus_6342#1 CAAGTG-TCTACTTTG--TACATCTCATC---ACATTAGA-TAACAGAAGGATCAGTGTA 167 *** * ** * ** * ** * * * * *** ******************* consensus_6342#0 TTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGAT 480 consensus_6342#1 TTTGTTCCTGGAAGATGGATAAGAAATGGAACTTTGGTGGAGTATGAATTTCTCGGTGAT 227 ************************************************************ consensus_6342#0 TGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGT 540 consensus_6342#1 TGTCCAAAACGCAACTCAATCGAAGAATGTCAGGACGCAAAGTCGTCGAATGAAATGTGT 287 ************************************************************ consensus_6342#0 ATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAATGATAACGATATTCGTGATTTA 600 consensus_6342#1 ATTTGGTGTGAAAGTGCCCATATGTGCGTTACCAGCAACGATAACGATATTCGTGATTTC 347 ************************************** ******************** consensus_6342#0 AA---------------------------------------------------------- 602 consensus_6342#1 AAATTAAATGGTTGTCGGGTTAAAAATAACTTGAATGTAGACGCTCCGAGTGAATCAACA 407 ** consensus_6342#0 -------------------------------- consensus_6342#1 CTTAACAAACAAGAAAAAACAAATGAAGAACT 439 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||