cluster # 6348

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 6348 cluster # 6348 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6348#0 length = 500 sequences # 3

consensus_6348#1 length = 300 sequences # 1

consensusID : consensus_6348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 500
fasta sequence

                              [TTCTCAAGGCCATCGTAGTGTCGTCCGAAGGTCGTTAGCGAATTATAGTCTCTTCTCAAGTTACAGCATATCTGAAATGGGTTAGCAATTGTCTGTCATATAGAATTTGCAATTCTACTTAAATGACCACTGATAACTCCGGAAAATCACATAACAGCTTGCTTTCCAACGTAAAGTTCGATCCGATCGAGTTGGAAGATCGATATGTTCATCAAGTATATGATGTGATAGCCTCTGAGTTCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCACTGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCAAAATATTATGCTACTATGAAAGCTAGCACTTCATCAACTAGTGTACAGTGCAAAAGTATAGTTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCCGAAACTAGCAGAGATTGTATATAACAGAGGTGTT]

[+] EMBL AI976303             [TTCTCAAGGCCATCGTAGTGTCGTCCGAAGGTCGTTAGCGAATTATAGTCTCTTCTCAAGTTACAGCATATCTGAAATGGGTTAGCAATTGTCTGTCATATAGAATTTGCAATTCTACTTAAATGACCACTGATAACTCCGGAAAATCACATAACAGCTTGCTTTCCAACGTAAAGTTCGATCCGATCGAGTTGGAAGATCGATATGTTCATCAAGTATATGATGTGATAGCCTCTGAGTTCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCACTGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCAAAATATTATGCTACTATGAAAGCTAGCACTTCATCAACTAGTGTACAGTGCAAAAGTATAGTTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCCGAAACTAGCAGAGATTGTATATAACAGAGG    ]
[+] EMBL AI976377             [         CCATCGTAGTGTCGTCCGAAGGTCGTTAGCGAATTATAGTCTCTTCTCAAGTTACAGCATATCTGAAATGGGTTAGCAATTGTCTGTCATATAGAATTTGCAATTCTACTTAAATGACCACTGATAACTCCGGAAAATCACATAACAGCTTGCTTTCCAACGTAAAGTTCGATCCGATCGAGTTGGAAGATCGATATGTTCATCAAGTATATGATGTGATAGCCTCTGAGTTCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCACTGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCAAAATATTATGCTACTATGAAAGCTAGCACTTCATCAACTAGTGTACAGTGCAAAAGTATAGTTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCCGAAACTAGCAGAGATTGTATATAACAGAGCTGTT]
[+] EMBL CD149444             [                                                                                                                              CCACTGATAACTCCGGAGGATCACATAACAGCTTGCTTTCCAACGTAAAGTTCGATCCGATCGAGTTGGAAGATCGATATGGTCATCAAGTATATGATGTGATAGCCTCTGAGTTCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCACTGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCAAAATATTATGCTACTATGAAAGCTAACACTTCATCAACTAGTGTACAGTGCAAAAGTATAGTTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCTGAAACTAGCAGAGATTGTATATAACAGAGG    ]




>consensus_6348#0
TTCTCAAGGCCATCGTAGTGTCGTCCGAAGGTCGTTAGCGAATTATAGTCTCTTCTCAAG
TTACAGCATATCTGAAATGGGTTAGCAATTGTCTGTCATATAGAATTTGCAATTCTACTT
AAATGACCACTGATAACTCCGGAAAATCACATAACAGCTTGCTTTCCAACGTAAAGTTCG
ATCCGATCGAGTTGGAAGATCGATATGTTCATCAAGTATATGATGTGATAGCCTCTGAGT
TCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCAC
TGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCAA
AATATTATGCTACTATGAAAGCTAGCACTTCATCAACTAGTGTACAGTGCAAAAGTATAG
TTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCCGAAACTAGCAGAGA
TTGTATATAACAGAGGTGTT

consensusID : consensus_6348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [GAGAATCGTCGACATTAGAGATCGTTTTGGTCTTACGATTAACGTAATATGACGGTTCAGATTTTGAAATACCGTGCTGTTCTTTAGCCCAAACTTGTATTAACCCTTGACCTCCAACGCGTAGAATACGAGCCAACTCATTTACTGCTTCTATACGCCTAGCCATAGTGGATAAATGATGGATAACAGCTATGCACAGAAAAAAATCAAAACGTTCTGAACAATAAGGTATTCGTAGTATGTCACCTATGACTACATCGAAGCCTCTGTTATATACAATCTCTGCTATTTTCGGGCTTC]

[+] EMBL CD149511             [GAGAATCGTCGACATTAGAGATCGTTTTGGTCTTACGATTAACGTAATATGACGGTTCAGATTTTGAAATACCGTGCTGTTCTTTAGCCCAAACTTGTATTAACCCTTGACCTCCAACGCGTAGAATACGAGCCAACTCATTTACTGCTTCTATACGCCTAGCCATAGTGGATAAATGATGGATAACAGCTATGCACAGAAAAAAATCAAAACGTTCTGAACAATAAGGTATTCGTAGTATGTCACCTATGACTACATCGAAGCCTCTGTTATATACAATCTCTGCTATTTTCGGGCTTC]




>consensus_6348#1
GAGAATCGTCGACATTAGAGATCGTTTTGGTCTTACGATTAACGTAATATGACGGTTCAG
ATTTTGAAATACCGTGCTGTTCTTTAGCCCAAACTTGTATTAACCCTTGACCTCCAACGC
GTAGAATACGAGCCAACTCATTTACTGCTTCTATACGCCTAGCCATAGTGGATAAATGAT
GGATAACAGCTATGCACAGAAAAAAATCAAAACGTTCTGAACAATAAGGTATTCGTAGTA
TGTCACCTATGACTACATCGAAGCCTCTGTTATATACAATCTCTGCTATTTTCGGGCTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6348#0      TTCTCAAGGCCATCGTAGTGTCGTCCGAAGGTCGTTAGCGAATTATAGTCTCTTCTCAAG 60
consensus_6348#1      ------------------------------------------------------------
                                                                                  

consensus_6348#0      TTACAGCATATCTGAAATGGGTTAGCAATTGTCTGTCATATAGAATTTGCAATTCTACTT 120
consensus_6348#1      ------------------------------------------------------------
                                                                                  

consensus_6348#0      AAATGACCACTGATAACTCCGGAAAATCACATAACAGCTTGCTTTCCAACGTAAAGTT-C 179
consensus_6348#1      ----GAGAATCGTCGACATTAGAGA---TCGTTTTGGTCTTACGATTAACGTAATATGAC 53
                          **  *  *   **    ** *    * *    *  *       *******  *  *

consensus_6348#0      GATCCGATCGAGTTGGAAGATCGATATGTTCATCAAGTATATGATGTGATAGCCTCTGAG 239
consensus_6348#1      GGTTCAGAT--TTTGAAATACCGTGCTGTTCTTTAGCCCAAACTTGTATTAACCCTTGAC 111
                      * * *       *** ** * **   ***** * *     *   ***  ** **  *** 

consensus_6348#0      TTCAGTTCTACTCGACATTCACCTTGGCCTAGTGTTTTAAAATTTATTGAAGCACAACCA 299
consensus_6348#1      CTC----CAACGCGTAGAATAC--GAGCCAACTCATTTACTGCTTCTATACGCCTAGCCA 165
                       **    * ** **      **    *** * *  ****    ** *  * **  * ***

consensus_6348#0      CTGAATAGCCTTGGTGCTGATGTAGGTTGTGGAAATGGAAAATATCTTACTGCGTCATCA 359
consensus_6348#1      TAGTGGATAAATGATG--GATAACAGCTATGCACAGAAAAAAATCAAAACGTTCTGAACA 223
                        *   *    ** **  ***    * * ** * *   ****      **    * * **

consensus_6348#0      AAATATTATGC-TACTATGAAAGCTAGCACTTCATCAACTAGTGTACAGTGCAAAAGTAT 418
consensus_6348#1      ATAAGGTATTCGTAGTATGTCACCTATGACTACATCGAAGCCTCTGTTATATACAATCTC 283
                      * *   *** * ** ****  * ***  *** **** *    * *    *  * **    

consensus_6348#0      AGTTGCCACTTCTAATTTCATTCCTATCGCTGCTATGGAGAGAAGCCCGAAACTAGCAGA 478
consensus_6348#1      TGCTATT--TTCGGGCTTC----------------------------------------- 300
                       * *     ***    ***                                         

consensus_6348#0      GATTGTATATAACAGAGGTGTT 500
consensus_6348#1      ----------------------