These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6349#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 747 fasta sequence [CTCGAGGGCCAAAATTCGGCACGAGGTCCGGAATGCTGCTTTGCTCTCTTCAAAATATTCTGGACTTCAACCTGTTCGTTCGCTAATACACACTTTGATAAAACAGCATCGTTTGTATGCGGTTTTTCCCGGGAAAACCATTCCCTCACCACTTGTTTCCACAGTAGTTTCTAGAAACGCAAGTCATGGAAGAACAATTCCTAAGAGAGTTTCAGATTACATGTCACGCGTATTTTTCGACAATGTGCACTTCTATATTATGTTGGGTCTTGTTCCTTCATTTCTACTAGTTTTTTTTGTCAACTCATTTATTGGGCCAGCAGAATTGACGGACATACCAGAGGACTATGAGCCACGTTACTGGGAATACCACAAACACCCTATTACGCGCTTCATTGCGAAGTACATGTGCGAACATCCTCAGAAGTTGTATGAATCTACTTTAGCGGAATTAGATGAGTTTCGATTTACTAAGGAGCTGGTTGATGAAGAAAGATGGTTTCGTAAATCTCAACTTGAAAAGGGCGACTTTCGTGGTTGGTATTTTATCCCAGTTAATCCAACTGGCGTGAATAGCTCATTTGAAAGACTCACAAAAGATCAAGAGGCTGGTCAACTAGTTAGTCGTTGATTATAAAACTCATTTGAGAATAATACTTTGTATTATCTTTCATCTAAGTGCAGTTTATTTTAATCCTAAATCANATGTTATGANAAACTTCTGTTATTCATTCATTAATAAAAAAT] [+] EMBL CD080635 [CTCGAGGGCCAAAATTCGGCACGAGGTCCGGAATGCTGCTTTGCTCTCTTCAAAATATTCTGGACTTCAACCTGTTCGTTCGCTAATACACACTTTGATAAAACAGCATCGTTTGTATGCGGTTTTTCCCGGGAAAACCATTCCCTCACCACTTGTTTCCACAGTAGTTTCTAGAAACGCAAGTCATGGAAGAACAATTCCTAAGAGAGTTTCAGATTACATGTCACGCGTATTTTTCGACAATGTGCACTTCTATATTATGTTGGGTCTTGTTCCTTCATTTCTACTAGTTTTTTTTGTCAACTCATTTATTGGGCCAGCAGAATTGACGGACATACCAGAGGACTATGAGCCACGTTACTGGGAATACCACAAACACCCTATTACGCGCTTCATTGCGAAGTACATGTGCGAACATCCTCAGAAGTTGTATGAATCTACTTTAGCGGAATTAGATGAGTTTCGATTTACTAAGGAGCTGGTTGATGAAGAAAGATGGTTTCGTAAATCTCAACTTGAAAAGGGCGACTTTCGTGGTTGGTATTTTATCCCAGTTAATCCAACTGGCGTGAATAGCTCATTTGAAAGACTCACAAAAGATCAAGAGGCTGGTCAACTAGTTAGTCGTTGATTATAAAACTCATTTGAGAATAATACTTTGTATTATCTTTCATCTAAGTGCAGTTTATTTTAATCCTAAATCANATGTTATGANAAACTTCTGTTATTCATTCATTAATAAAAAAT] consensusID : consensus_6349#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [TTTTTTTTTTTTTTAGAAAGCCATTATCATCTTTATTCTGAAAATAATTTATGAATGAAAAGTATAAACTGTTGGGGCGATGTAATTTCTACAAAGGGAAAAGAAGTTACAGTGATAAACCGTAAACATAATTATCTCTACATCCAGTGACAATATATACATCATTTGAGTTTTCGGAATAAAGAACTGGAGATGAGAAACACTGGTTGGGTAGGTGGTAAGTCGACAACACGGTAGGAGCTTTTCGCCAGACAGATAGGCTCGAAGGTAATGAACATCCATACACCAAACCATCTGCTCTTGTTCCAATCAATAAACTGTGTCCATCGTTCATACGATTAGAAAGCCACTTGAGGACCCAGAGAAGCTTCCCAAACAAGATAGAGAAC] [+] EMBL AI395307 [TTTTTTTTTTTTTTAGAAAGCCATTATCATCTTTATTCTGAAAATAATTTATGAATGAAAAGTATAAACTGTTGGGGCGATGTAATTTCTACAAAGGGAAAAGAAGTTACAGTGATAAACCGTAAACATAATTATCTCTACATCCAGTGACAATATATACATCATTTGAGTTTTCGGAATAAAGAACTGGAGATGAGAAACACTGGTTGGGTAGGTGGTAAGTCGACAACACGGTAGGAGCTTTTCGCCAGACAGATAGGCTCGAAGGTAATGAACATCCATACACCAAACCATCTGCTCTTGTTCCAATCAATAAACTGTGTCCATCGTTCATACGATTAGAAAGCCACTTGAGGACCCAGAGAAGCTTCCCAAACAAGATAGAGAAC] consensusID : consensus_6349#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 283 fasta sequence [TTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAAGTGCCTATCACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGCCCCGCATCTATCACCGTACCATC] [+] EMBL BG932830 [TTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAAGTGCCTATCACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAGACAGCAGGA ] [-] EMBL BG931998 [ tggtaagcAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGCCCCGCATCTATCACCGTACCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6349#0 CTCGAGGGCCAAAATTCGGCACGAGGTCCGGAATGCTGCTTTGCTCTCTTCAAAATATTC 60 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 TGGACTTCAACCTGTTCGTTCGCTAATACACACTTTGATAAAACAGCATCGTTTGTATGC 120 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 GGTTTTTCCCGGGAAAACCATTCCCTCACCACTTGTTTCCACAGTAGTTTCTAGAAACGC 180 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 AAGTCATGGAAGAACAATTCCTAAGAGAGTTTCAGATTACATGTCACGCGTATTTTTCGA 240 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 CAATGTGCACTTCTATATTATGTTGGGTCTTGTTCCTTCATTTCTACTAGTTTTTTTTGT 300 consensus_6349#1 ---------TTTTTTTTTTTTTTAGAAAGCCATTATCATCTTTATTCTGAAAATAATTTA 51 consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 CAACTCATTTATTGGGCCAGCAGAATTGACGGACATACCAG-AGGACTATGAGCCACGTT 359 consensus_6349#1 TGAATGAAAAGTATAAACTGTTGGGGCGATGTAATTTCTAC-AAAGGGAAAAG--AAGTT 108 consensus_6349#2 -----------TTCAAGGTTCTCACTTGA-ATATTTGCTACTACCACCAAGAAC--TGGC 46 * ** * * * * * * * * consensus_6349#0 ACTGGGA-ATACCACAAACACCCTATTACGCGCTTCATTGCGAAGTACATGTGCGAACAT 418 consensus_6349#1 ACAGTGATAAACCGTAAACAT--AATTAT---CTCTACATCCAGTGACA-ATATATACAT 162 consensus_6349#2 GCTGTGGGATGAACCAAACGTTCGGTTAAAGTGCCTATCACGACGCTCATG-AGATACCA 105 * * * * **** *** * * * ** ** consensus_6349#0 CCTCAGAAGTTGTATGAATCTACTTTAGCGGAATTAGATGAGTTTCGATTTACTAAGGAG 478 consensus_6349#1 CATTTGA-GTTTTCGGAATAAAG---AACTGGAGATGAGAAACACTGGTTGGGTAGGTGG 218 consensus_6349#2 CAAAAGGTGTTGGTTGGTCTAGA--CAGCAGGA--CGGTGGCCATGGA---AGTCGGAAG 158 * * *** * * * * * * * * * * consensus_6349#0 CTGGTTGATGAAGAAAGATGGTTTCGTAAATCTCAACTTGAAAAGGGCGACTTTCGTGG- 537 consensus_6349#1 TAAGTCGACAACACGGTAGGAGCTTTTCG---CCAGACAGATAGGCTCGAAGGTAATGAA 275 consensus_6349#2 CCGCTAAGGAGTGTGTAACAACTCACCTG--CCGAATCAACCAGCCCTGAAAATGGATGG 216 * * * * ** * consensus_6349#0 --TTGGTATTTTATCCCAGTTAATCCAACTGGCGTGAATAGCTCATTTGAAAGACTCACA 595 consensus_6349#1 CATCCATACACCAAACCATCTGCTCTTGTTCCAATCAATAAACTGTGTCCATCGTTCATA 335 consensus_6349#2 CGCTCGAGCGTTGGACC---TATACCGGACCGTTGCTGTAAGCTAGCCCCGCATCTATCA 273 ** * * ** * * consensus_6349#0 AAAGATCAAGAGGCTGGTCAACTAGTTAGTCGTTGATTATAAAACTCATTTGAGAATAAT 655 consensus_6349#1 --CGATTAGAAAGCCACTTGAGGACCCAGA-GAAGCTTCCCAAACAAGATAGAGAAC--- 389 consensus_6349#2 CCGTACCATC-------------------------------------------------- 283 * * consensus_6349#0 ACTTTGTATTATCTTTCATCTAAGTGCAGTTTATTTTAATCCTAAATCANATGTTATGAN 715 consensus_6349#1 ------------------------------------------------------------ consensus_6349#2 ------------------------------------------------------------ consensus_6349#0 AAACTTCTGTTATTCATTCATTAATAAAAAAT 747 consensus_6349#1 -------------------------------- consensus_6349#2 -------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||