cluster # 6349

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Schistosoma mansoni
cluster # 6349 cluster # 6349 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6349#0 length = 747 sequences # 1

consensus_6349#1 length = 389 sequences # 1
consensus_6349#2 length = 283 sequences # 2

consensusID : consensus_6349#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 747
fasta sequence

                              [CTCGAGGGCCAAAATTCGGCACGAGGTCCGGAATGCTGCTTTGCTCTCTTCAAAATATTCTGGACTTCAACCTGTTCGTTCGCTAATACACACTTTGATAAAACAGCATCGTTTGTATGCGGTTTTTCCCGGGAAAACCATTCCCTCACCACTTGTTTCCACAGTAGTTTCTAGAAACGCAAGTCATGGAAGAACAATTCCTAAGAGAGTTTCAGATTACATGTCACGCGTATTTTTCGACAATGTGCACTTCTATATTATGTTGGGTCTTGTTCCTTCATTTCTACTAGTTTTTTTTGTCAACTCATTTATTGGGCCAGCAGAATTGACGGACATACCAGAGGACTATGAGCCACGTTACTGGGAATACCACAAACACCCTATTACGCGCTTCATTGCGAAGTACATGTGCGAACATCCTCAGAAGTTGTATGAATCTACTTTAGCGGAATTAGATGAGTTTCGATTTACTAAGGAGCTGGTTGATGAAGAAAGATGGTTTCGTAAATCTCAACTTGAAAAGGGCGACTTTCGTGGTTGGTATTTTATCCCAGTTAATCCAACTGGCGTGAATAGCTCATTTGAAAGACTCACAAAAGATCAAGAGGCTGGTCAACTAGTTAGTCGTTGATTATAAAACTCATTTGAGAATAATACTTTGTATTATCTTTCATCTAAGTGCAGTTTATTTTAATCCTAAATCANATGTTATGANAAACTTCTGTTATTCATTCATTAATAAAAAAT]

[+] EMBL CD080635             [CTCGAGGGCCAAAATTCGGCACGAGGTCCGGAATGCTGCTTTGCTCTCTTCAAAATATTCTGGACTTCAACCTGTTCGTTCGCTAATACACACTTTGATAAAACAGCATCGTTTGTATGCGGTTTTTCCCGGGAAAACCATTCCCTCACCACTTGTTTCCACAGTAGTTTCTAGAAACGCAAGTCATGGAAGAACAATTCCTAAGAGAGTTTCAGATTACATGTCACGCGTATTTTTCGACAATGTGCACTTCTATATTATGTTGGGTCTTGTTCCTTCATTTCTACTAGTTTTTTTTGTCAACTCATTTATTGGGCCAGCAGAATTGACGGACATACCAGAGGACTATGAGCCACGTTACTGGGAATACCACAAACACCCTATTACGCGCTTCATTGCGAAGTACATGTGCGAACATCCTCAGAAGTTGTATGAATCTACTTTAGCGGAATTAGATGAGTTTCGATTTACTAAGGAGCTGGTTGATGAAGAAAGATGGTTTCGTAAATCTCAACTTGAAAAGGGCGACTTTCGTGGTTGGTATTTTATCCCAGTTAATCCAACTGGCGTGAATAGCTCATTTGAAAGACTCACAAAAGATCAAGAGGCTGGTCAACTAGTTAGTCGTTGATTATAAAACTCATTTGAGAATAATACTTTGTATTATCTTTCATCTAAGTGCAGTTTATTTTAATCCTAAATCANATGTTATGANAAACTTCTGTTATTCATTCATTAATAAAAAAT]




>consensus_6349#0
CTCGAGGGCCAAAATTCGGCACGAGGTCCGGAATGCTGCTTTGCTCTCTTCAAAATATTC
TGGACTTCAACCTGTTCGTTCGCTAATACACACTTTGATAAAACAGCATCGTTTGTATGC
GGTTTTTCCCGGGAAAACCATTCCCTCACCACTTGTTTCCACAGTAGTTTCTAGAAACGC
AAGTCATGGAAGAACAATTCCTAAGAGAGTTTCAGATTACATGTCACGCGTATTTTTCGA
CAATGTGCACTTCTATATTATGTTGGGTCTTGTTCCTTCATTTCTACTAGTTTTTTTTGT
CAACTCATTTATTGGGCCAGCAGAATTGACGGACATACCAGAGGACTATGAGCCACGTTA
CTGGGAATACCACAAACACCCTATTACGCGCTTCATTGCGAAGTACATGTGCGAACATCC
TCAGAAGTTGTATGAATCTACTTTAGCGGAATTAGATGAGTTTCGATTTACTAAGGAGCT
GGTTGATGAAGAAAGATGGTTTCGTAAATCTCAACTTGAAAAGGGCGACTTTCGTGGTTG
GTATTTTATCCCAGTTAATCCAACTGGCGTGAATAGCTCATTTGAAAGACTCACAAAAGA
TCAAGAGGCTGGTCAACTAGTTAGTCGTTGATTATAAAACTCATTTGAGAATAATACTTT
GTATTATCTTTCATCTAAGTGCAGTTTATTTTAATCCTAAATCANATGTTATGANAAACT
TCTGTTATTCATTCATTAATAAAAAAT

consensusID : consensus_6349#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence

                              [TTTTTTTTTTTTTTAGAAAGCCATTATCATCTTTATTCTGAAAATAATTTATGAATGAAAAGTATAAACTGTTGGGGCGATGTAATTTCTACAAAGGGAAAAGAAGTTACAGTGATAAACCGTAAACATAATTATCTCTACATCCAGTGACAATATATACATCATTTGAGTTTTCGGAATAAAGAACTGGAGATGAGAAACACTGGTTGGGTAGGTGGTAAGTCGACAACACGGTAGGAGCTTTTCGCCAGACAGATAGGCTCGAAGGTAATGAACATCCATACACCAAACCATCTGCTCTTGTTCCAATCAATAAACTGTGTCCATCGTTCATACGATTAGAAAGCCACTTGAGGACCCAGAGAAGCTTCCCAAACAAGATAGAGAAC]

[+] EMBL AI395307             [TTTTTTTTTTTTTTAGAAAGCCATTATCATCTTTATTCTGAAAATAATTTATGAATGAAAAGTATAAACTGTTGGGGCGATGTAATTTCTACAAAGGGAAAAGAAGTTACAGTGATAAACCGTAAACATAATTATCTCTACATCCAGTGACAATATATACATCATTTGAGTTTTCGGAATAAAGAACTGGAGATGAGAAACACTGGTTGGGTAGGTGGTAAGTCGACAACACGGTAGGAGCTTTTCGCCAGACAGATAGGCTCGAAGGTAATGAACATCCATACACCAAACCATCTGCTCTTGTTCCAATCAATAAACTGTGTCCATCGTTCATACGATTAGAAAGCCACTTGAGGACCCAGAGAAGCTTCCCAAACAAGATAGAGAAC]




>consensus_6349#1
TTTTTTTTTTTTTTAGAAAGCCATTATCATCTTTATTCTGAAAATAATTTATGAATGAAA
AGTATAAACTGTTGGGGCGATGTAATTTCTACAAAGGGAAAAGAAGTTACAGTGATAAAC
CGTAAACATAATTATCTCTACATCCAGTGACAATATATACATCATTTGAGTTTTCGGAAT
AAAGAACTGGAGATGAGAAACACTGGTTGGGTAGGTGGTAAGTCGACAACACGGTAGGAG
CTTTTCGCCAGACAGATAGGCTCGAAGGTAATGAACATCCATACACCAAACCATCTGCTC
TTGTTCCAATCAATAAACTGTGTCCATCGTTCATACGATTAGAAAGCCACTTGAGGACCC
AGAGAAGCTTCCCAAACAAGATAGAGAAC

consensusID : consensus_6349#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 283
fasta sequence

                              [TTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAAGTGCCTATCACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGCCCCGCATCTATCACCGTACCATC]

[+] EMBL BG932830             [TTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAAGTGCCTATCACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAGACAGCAGGA                                                                                                                                                   ]
[-] EMBL BG931998             [                             tggtaagcAGAACTGGCGCTGTGGGATGAACCAAACGTTCGGTTAAGGTGCCTAACACGACGCTCATGAGATACCACAAAAGGTGTTGGTTGGTCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAACTCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCGGACCGTTGCTGTAAGCTAGCCCCGCATCTATCACCGTACCATC]




>consensus_6349#2
TTCAAGGTTCTCACTTGAATATTTGCTACTACCACCAAGAACTGGCGCTGTGGGATGAAC
CAAACGTTCGGTTAAAGTGCCTATCACGACGCTCATGAGATACCACAAAAGGTGTTGGTT
GGTCTAGACAGCAGGACGGTGGCCATGGAAGTCGGAAGCCGCTAAGGAGTGTGTAACAAC
TCACCTGCCGAATCAACCAGCCCTGAAAATGGATGGCGCTCGAGCGTTGGACCTATACCG
GACCGTTGCTGTAAGCTAGCCCCGCATCTATCACCGTACCATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6349#0      CTCGAGGGCCAAAATTCGGCACGAGGTCCGGAATGCTGCTTTGCTCTCTTCAAAATATTC 60
consensus_6349#1      ------------------------------------------------------------
consensus_6349#2      ------------------------------------------------------------
                                                                                  

consensus_6349#0      TGGACTTCAACCTGTTCGTTCGCTAATACACACTTTGATAAAACAGCATCGTTTGTATGC 120
consensus_6349#1      ------------------------------------------------------------
consensus_6349#2      ------------------------------------------------------------
                                                                                  

consensus_6349#0      GGTTTTTCCCGGGAAAACCATTCCCTCACCACTTGTTTCCACAGTAGTTTCTAGAAACGC 180
consensus_6349#1      ------------------------------------------------------------
consensus_6349#2      ------------------------------------------------------------
                                                                                  

consensus_6349#0      AAGTCATGGAAGAACAATTCCTAAGAGAGTTTCAGATTACATGTCACGCGTATTTTTCGA 240
consensus_6349#1      ------------------------------------------------------------
consensus_6349#2      ------------------------------------------------------------
                                                                                  

consensus_6349#0      CAATGTGCACTTCTATATTATGTTGGGTCTTGTTCCTTCATTTCTACTAGTTTTTTTTGT 300
consensus_6349#1      ---------TTTTTTTTTTTTTTAGAAAGCCATTATCATCTTTATTCTGAAAATAATTTA 51
consensus_6349#2      ------------------------------------------------------------
                                                                                  

consensus_6349#0      CAACTCATTTATTGGGCCAGCAGAATTGACGGACATACCAG-AGGACTATGAGCCACGTT 359
consensus_6349#1      TGAATGAAAAGTATAAACTGTTGGGGCGATGTAATTTCTAC-AAAGGGAAAAG--AAGTT 108
consensus_6349#2      -----------TTCAAGGTTCTCACTTGA-ATATTTGCTACTACCACCAAGAAC--TGGC 46
                                 *               **   *  * * *  *     *  *     *  

consensus_6349#0      ACTGGGA-ATACCACAAACACCCTATTACGCGCTTCATTGCGAAGTACATGTGCGAACAT 418
consensus_6349#1      ACAGTGATAAACCGTAAACAT--AATTAT---CTCTACATCCAGTGACA-ATATATACAT 162
consensus_6349#2      GCTGTGGGATGAACCAAACGTTCGGTTAAAGTGCCTATCACGACGCTCATG-AGATACCA 105
                       * * *  *      ****      ***        *   * *    **       **  

consensus_6349#0      CCTCAGAAGTTGTATGAATCTACTTTAGCGGAATTAGATGAGTTTCGATTTACTAAGGAG 478
consensus_6349#1      CATTTGA-GTTTTCGGAATAAAG---AACTGGAGATGAGAAACACTGGTTGGGTAGGTGG 218
consensus_6349#2      CAAAAGGTGTTGGTTGGTCTAGA--CAGCAGGA--CGGTGGCCATGGA---AGTCGGAAG 158
                      *    *  ***    *          * * * *   *         *      *  *  *

consensus_6349#0      CTGGTTGATGAAGAAAGATGGTTTCGTAAATCTCAACTTGAAAAGGGCGACTTTCGTGG- 537
consensus_6349#1      TAAGTCGACAACACGGTAGGAGCTTTTCG---CCAGACAGATAGGCTCGAAGGTAATGAA 275
consensus_6349#2      CCGCTAAGGAGTGTGTAACAACTCACCTG--CCGAATCAACCAGCCCTGAAAATGGATGG 216
                          *            *                *       *     **   *      

consensus_6349#0      --TTGGTATTTTATCCCAGTTAATCCAACTGGCGTGAATAGCTCATTTGAAAGACTCACA 595
consensus_6349#1      CATCCATACACCAAACCATCTGCTCTTGTTCCAATCAATAAACTGTGTCCATCGTTCATA 335
consensus_6349#2      CGCTCGAGCGTTGGACC---TATACCGGACCGTTGCTGTAAGCTAGCCCCGCATCTATCA 273
                                     **   *   *             **               *   *

consensus_6349#0      AAAGATCAAGAGGCTGGTCAACTAGTTAGTCGTTGATTATAAAACTCATTTGAGAATAAT 655
consensus_6349#1      --CGATTAGAAAGCCACTTGAGGACCCAGA-GAAGCTTCCCAAACAAGATAGAGAAC--- 389
consensus_6349#2      CCGTACCATC-------------------------------------------------- 283
                          *  *                                                    

consensus_6349#0      ACTTTGTATTATCTTTCATCTAAGTGCAGTTTATTTTAATCCTAAATCANATGTTATGAN 715
consensus_6349#1      ------------------------------------------------------------
consensus_6349#2      ------------------------------------------------------------
                                                                                  

consensus_6349#0      AAACTTCTGTTATTCATTCATTAATAAAAAAT 747
consensus_6349#1      --------------------------------
consensus_6349#2      --------------------------------