These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 605 fasta sequence [GCACCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAACATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTCACTCAAATTTATTGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTTTAGTAGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAATACACGTAAGTTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTTTGAACCGCTTTTCTCTACTCAAAGTTCTACCCAACTTAAAATTTTTCACAGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCAACATCTTTGGGGATTACCTGTCCGGAACATGCTTCCAATGTCTTGGACGACCTCACACCGTCCCTCTCTTTGACCACAATAGCGCCTGGAAATTCTTCAAATCGTTTGTTGCCGTTCACAGATGATCTTGGTTTATGCATTANACACTCTCCTGATGTGTC] [+] EMBL CD064539 [GCACCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAACATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTCACTCAAATTTATTGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTTTAGTAGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAATACACGTAAGTTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTTTGAACCGCTTTTCTCTACTCAAAGTTCTACCCAACTTAAAATTTTTCACAGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCAACATCTTTGGGGATTACCTGTCCGGAACATGCTTCCAATGTCTTGGACGACCTCACACCGTCCCTCTCTTTGACCACAATAGCGCCTGGAAATTCTTCAAATCGTTTGTTGCCGTTCACAGATGATCTTGGTTTATGCATTANACACTCTCCTGATGTGTC] [+] EMBL CD064544 [GCACCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAACATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTCACTCAAATTTATTGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTTTAGTAGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAATACACGTAAGCTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTCTGAACCGCTTTTCTCTACTCAAAGTTCTACCCAACTTAAAATTTTTCACAGGTGCCCACCTCTATTTGCGTGACTGAAA ] [+] EMBL CD112543 [ CCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAACATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTCACTCAAATTTATAGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTTTAGTAGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAATACACGTAAGTTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTTTGAACCGCTTTTCTCTACTCAAAGTTCTACCCAACTTAAAATTTTTCACAGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCAACATCTTTGGGGATTACCTGTCCGGAACATGC ] consensusID : consensus_6356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [GCTCGCAGTTTGATCCCTGCTTTTCTCATTAGCTCATGTTTACGGATTTTGTATATTATGTACTAGGATTGTTTTGTGCACCCTAAGTGCAGTACTATTAACAAATATTTTGACTGCTGTGAACGGAAATTATTCTTTACCCCCCGTAGTTTCTTCGCTCTTTACTGTGGTTCATGTGAGAATGAGTTGTTTAGCATGTTTTAGTGTGTCCGAGGACTAATGGTAAATGGAGACGGTTTTTTCGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCNACATCTTTGGGGATTACCTGTCCGGAACATGCTTCCNA] [+] EMBL CD184789 [GCTCGCAGTTTGATCCCTGCTTTTCTCATTAGCTCATGTTTACGGATTTTGTATATTATGTACTAGGATTGTTTTGTGCACCCTAAGTGCAGTACTATTAACAAATATTTTGACTGCTGTGAACGGAAATTATTCTTTACCCCCCGTAGTTTCTTCGCTCTTTACTGTGGTTCATGTGAGAATGAGTTGTTTAGCATGTTTTAGTGTGTCCGAGGACTAATGGTAAATGGAGACGGTTTTTTCGGTGCCCACCTCTATTTCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATTCAGCCGGGTTCTTCAAAATATTCACACCCNACATCTTTGGGGATTACCTGTCCGGAACATGCTTCCNA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6356#0 GCACCCAGGTAGTAAATATATTTAAGGACTACATTACATTTGTTTTTACATAGATATGAA 60 consensus_6356#1 ------------------------------------------------------------ consensus_6356#0 CATTTAAAAAATTTTTTTAGGATCGTTGCCTACATATGTTGTTGGAATCAGATTTTTTTC 120 consensus_6356#1 ---------------------------------GCTCGCAGTTTGATCCCTGCTTTTCTC 27 * *** ** * **** ** consensus_6356#0 A----CTCAAATTTATTGATGTCTTGTACCTCAGAACACAATCTGCTATAAGTTTAAGTT 176 consensus_6356#1 ATTAGCTCATGTTTACGGATTTTGTATATTATGTACTAGGAT-TGTTTT--GTGCACCCT 84 * **** **** *** * * ** * * ** ** * * ** * * consensus_6356#0 TAGTAGAACGCCAATTATTGCTCCTAGTTATGTTGTTCATTTAGATACAAACACTGAAAT 236 consensus_6356#1 AAGTGCAGTACTATTAACAAATATTTTGACTGCTGTGAACGGAAATT---ATTCTTTACC 141 *** * * * * * * * ** *** * * ** * ** * consensus_6356#0 ACACGTAAGTTGTATGTTTTTCCTCCGGTAAATTGGTTAATTCTAAGTATTTTGAACCGC 296 consensus_6356#1 CCCCGTAGTTTCTTCGCTCTT--TACTGTGGTTCATGTGAGAATGAGTTGTTTAGCATGT 199 * **** ** * * * ** * * ** * * * * *** *** * consensus_6356#0 TTTTCTCTACTCAAAGTTCTAC--CCAACTTAAAATTTTTCACAGGTGCCCACCTCTATT 354 consensus_6356#1 TTTAGTGTGTCCGAGGACTAATGGTAAATGGAGACGGTTTTTTCGGTGCCCACCTCTATT 259 *** * * * * * * ** * * *** **************** consensus_6356#0 TCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATT 414 consensus_6356#1 TCCGTCACTGAAAGTGGCGTTACGAATACCGTCCACATTGATGTCAACATTGGATCTATT 319 ************************************************************ consensus_6356#0 CAGCCGGGTTCTTCAAAATATTCACACCCAACATCTTTGGGGATTACCTGTCCGGAACAT 474 consensus_6356#1 CAGCCGGGTTCTTCAAAATATTCACACCCNACATCTTTGGGGATTACCTGTCCGGAACAT 379 ***************************** ****************************** consensus_6356#0 GCTTCCAATGTCTTGGACGACCTCACACCGTCCCTCTCTTTGACCACAATAGCGCCTGGA 534 consensus_6356#1 GCTTCCNA---------------------------------------------------- 387 ****** * consensus_6356#0 AATTCTTCAAATCGTTTGTTGCCGTTCACAGATGATCTTGGTTTATGCATTANACACTCT 594 consensus_6356#1 ------------------------------------------------------------ consensus_6356#0 CCTGATGTGTC 605 consensus_6356#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||