These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 635 fasta sequence [AAATGATTCTGAACCAAGTGAATGTGATAATTCCATAGGTTGATGAATATCTCTGTTAGTATGTTGTTGTATTTTAGTGATTGTTGGATCTAAATTGGCGTAAGCTGACTGAGCCACTATAATCTGAGAAGTAGGTTGACAAACATTTGTACTGGCAGTTACGTTAGTATTAATTGTTGATACGGTTTTTTGAATTTTATTTTCATATGGTGTTGATTTAATGCTAGTTGGGCATAGATTAGCTTTTTTTTGTCCGATCTCGACTGGCTTAGTAATTTCATCATTTGTATTCGTGGTTGAATGTTCCAACTGGCATAATTGGTCTGCTGTTACCAATTGACCATAAATAGCACCACACGCACTCAATACAGGTGATGAAGATAGTGGTGGTTGATTTGCCTGACATCTGATAGTGGAAATTTGTGAAATGGCAGCATCAGACCAGTTGGATACTATCAGACTATTCTTGCCAATACTATGAGTGTTTGCATTGTTTAAGGATAGATCACTACTAACACGAGTGCTTGACTTCCCTAGTCTTTCGCCACTTACGGCCATGTCAATAAACTTTAACCGATTAATTTCAGTACATTTAAAAGGTCANGGGGAAGTTGCAATTGTNATTAAAGTAAAGT] [+] EMBL CD201093 [AAATGATTCTGAACCAAGTGAATGTGATAATTCCATAGGTTGATGAATATCTCTGTTAGTATGTTGTTGTATTTTAGTGATTGTTGGATCTAAATTGGCGTAAGCTGACTGAGCCACTATAATCTGAGAAGTAGGTTGACAAACATTTGTACTGGCAGTTACGTTAGTATTAATTGTTGATACGGTTTTTTGAATTTTATTTTCATATGGTGTTGATTTAATGCTAGTTGGGCATAGATTAGCTTTTTTTTGTCCGATCTCGACTGGCTTAGTAATTTCATCATTTGTATTCGTGGTTGAATGTTCCAACTGGCATAATTGGTCTGCTGTTACCAATTGACCATAAATAGCACCACACGCACTCAATACAGGTGATGAAGATAGTGGTGGTTGATTTGCCTGACATCTGATAGTGGAAATTTGTGAAATGGCAGCATCAGACCAGTTGGATACTATCAGACTATTCTTGCCAATACTATGAGTGTTTGCATTGTTTAAGGATAGATCACTACTAACACGAGTGCTTGACTTCCCTAGTCTTTCGCCACTTACGGCCATGTCAATAAACTTTAACCGATTAATTTCAGTACATTTAAAAGGTCANGGGGAAGTTGCAATTGTNATTAAAGTAAAGT] [+] EMBL CD185160 [ TGGATCTAAATTGGCGTAAGCTGACTGAGCCACTATAATCTGAGAAGTAGGTTGACAAACATTTGTACTGGCAGTTACGTTAGTATTAATTGTTGATACGGTTTTTTGAATTTTATTTTCATATGGTGTTGATTTAATGCTAGTTGGGCATAGATTAGCTTTTTTTTGTCCGATCTCGACTGGCTTAGTAATTTCATCATTTGTATTCGTGGTTGAATGTTCCAACTGGCATAATTGGTCTGCTGTTACCAATTGACCATAAATAGCACCACAtgaa ] [+] EMBL CD144690 [ AATTGACCATAAATAGCACCACACGCACTCAATACAGGTGATGAAGATAGTGGTGGTTGATTTGCCTGACATCTGATAGTGGAAATTTGTGAAATGGCAG ] consensusID : consensus_6363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [CTATGGAATTATCACATTCACTTGGTTCAGAATCATTTATATTTTCATGCCATCCCGATGTTCAACCAACTGCAATGGATATAGGTGGACAACCAGGTAGTCCATCATTATCAAAAAATCTTACAACTGTAGTATCTAGTTGCTTACTTCAAAGTAGTACTTCACAGAGCGGATTAAATACTTATTGTTATCCTATTTTTCCATTTTCTGTTTCCACTGCGGATGAAATTACTTGTAATTCAACATTATGTAATCATGTCAAAGATGTTGGATTAGGCAATAATACTCGCGGTACTATAGTTACTCATTGTGAACCGGTTGTAAATGTTAGTAATCAGTATCCTTGTCCTCGAGATTTAGAACAACGACCTGTCATAAAAATGTCAGTAGATCTTATTCGAACGTATAAAAATATTAATGAGGTATACTACCGAAAGAAACGTCGTATTAGGGAACAAATTAGCGAGGATAGTATTCAAAAAAGAGATCGTAAAGGTTCTGTTACTTTTGGTAATGGTGG] [+] EMBL CD178615 [CTATGGAATTATCACATTCACTTGGTTCAGAATCATTTATATTTTCATGCCATCCCGATGTTCAACCAACTGCAATGGATATAGGTGGACAACCAGGTAGTCCATCATTATCAAAAAATCTTACAACTGTAGTATCTAGTTGCTTACTTCAAAGTAGTACTTCACAGAGCGGATTAAATACTTATTGTTATCCTATTTTTCCATTTTCTGTTTCCACTGCGGATGAAATTACTTGTAATTCAACATTATGTAATCATGTCAAAGATGTTGGATTAGGCAATAATACTCGCGGTACTATAGTTACTCATTGTGAACCGGTTGTAAATGTTAGTAATCAGTATCCTTGTCCTCGAGATTTAGAACAACGACCTGTCATAAAAATGTCAGTAGATCTTATTCGAACGTATAAAAATATTAATGAGGTATACTACCGAAAGAAACGTCGTATTAGGGAACAAATTAGCGAGGATAGTATTCAAAAAAGAGATCGTAAAGGTTCTGTTACTTTTGGTAATGGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6363#0 AAATGATTCTGAACCAAGTGAATGTGATAATTCCATAGGTTGATGAATATCTCTGTTAGT 60 consensus_6363#1 -------------CTATGGAATTATCACA-TTCACTTGGTTCAGAATCATTTATATTTTC 46 * * * * * * * * *** * **** * * ** * * ** consensus_6363#0 ATGTTGTTGTATTTTAGTGATTGTTGGATCTAAATTGGCGTAAGCTGACTGAGCCACTAT 120 consensus_6363#1 ATGCC-----ATCCCGATGTTCAACCAACTGCAATGGATATAGGTGGAC--AACCAG-GT 98 *** ** ** * * *** * ** * *** * *** * consensus_6363#0 AATCTGAGAAGTAGGTTGACAAACATTTGTACTGGCAGTTACGTTAGTATTAATTGTTGA 180 consensus_6363#1 AGTCCATCA------TTATCAAAAAATCTTACA-------ACTGTAGTATCTA--GTTGC 143 * ** * ** **** * * *** ** ****** * **** consensus_6363#0 TACGGTTTTTTGAATTTTATTTTCATATGGTGTTGATTTAATGCTAGTTG--GGCATAGA 238 consensus_6363#1 T----TACTTCAAAGTAGTACTTCACAGAGCG--GATTAAATACTTATTGTTATCCTATT 197 * * ** ** * **** * * * **** *** ** *** * ** consensus_6363#0 TTAGCTTTTTTTTGTCCGATCTCGACTGGC----TTAGTAATTTCATCATTTGTATTCGT 294 consensus_6363#1 TTTCCATTTTCTGTTTCCACTGCGGATGAAATTACTTGTAATTCAACATTATGTAATCAT 257 ** * **** * * * * ** ** * ****** * * **** ** * consensus_6363#0 GGTTGAATGTTCCAACTGGCATAATTGGTCTGCTGTTACCAATTGACCATAAATAGCACC 354 consensus_6363#1 G-TCAAAGATGTTGGATTAGGCAATAATACTCGCGGTACTA--TAGTTACTCATTGTGA- 313 * * ** * * *** ** * *** * * * ** * consensus_6363#0 ACACGCACTCAATACAGGTGATGAAGATAGTGGTGGTTGATTTGCCTGACATCTGATAGT 414 consensus_6363#1 ACCGGTTGTAAATGTTAGTAATCAGTATCCTTGTCCTCGAGATTTAGAACAACGACCTGT 373 ** * * *** ** ** * ** * ** * ** * *** * ** consensus_6363#0 GGAAATTTGTGAAATGGCAGCATCAGACCAGTTGGATACTATCAGACTATTCTTGCCA-A 473 consensus_6363#1 CATAA------AAATGTCAGTA--GATCTTATTCGAACGTATAAAAATATTAATGAGGTA 425 ** ***** *** * * ** ** *** * * **** ** * consensus_6363#0 TACTATGAGTGTTTGCATTGTTTAAGGATAGATCACTACTAACACGAGTGCTT------G 527 consensus_6363#1 TACTACCGAAAGAAACGTCGTATTAGGGAACAA-ATTAGCGAGGATAGTATTCAAAAAAG 484 ***** * * ** * *** * * * ** * *** * * consensus_6363#0 ACTTCCCTAGTCTTTCGCCACTTACGGCCATGTCAATAAACTTTAACCGATTAATTTCAG 587 consensus_6363#1 AGATCGTAAAGGTTCTGTTACTTTTGGTAATGGTGG------------------------ 520 * ** * ** * **** ** *** consensus_6363#0 TACATTTAAAAGGTCANGGGGAAGTTGCAATTGTNATTAAAGTAAAGT 635 consensus_6363#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||