cluster # 6377

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Schistosoma mansoni
cluster # 6377 cluster # 6377 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6377#0 length = 498 sequences # 3

consensus_6377#1 length = 392 sequences # 1

consensusID : consensus_6377#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 498
fasta sequence

                              [AGTAGGCTGATTAGCGAAATGATGCGTTGAGGATGGTCTTTCGGCTTGAAGAGACGGAGATGAACTGAATTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGTCCATGGGACAGGTAAAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCGTGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAACTCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCTTGGACGGACAACAACCACTGGTTTAGATGAATCAGATCGAACTGCTTCACGTCGGAAACTCCTCGAGTTCTGAGTATTTTGTTGAAATATGTCCACATCTTTTGGTAGAAGGATAAGTCCACCATGTTTTTCCGTAGAATTTTCTGACGTCAAATTTGCGCACGTATTCGTGAGCGAACGTGAATTTCGTACATCGGG]

[+] EMBL CD189855             [AGTAGGCTGATTAGCGAAATGATGCGTTGAGGATGGTCTTTCGGCTTGAAGAGACGGAGATGAACTGACTTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGTCCATGGGACAGGTAAAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCGTGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAACTCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATG                                                                                                                                                                                                                           ]
[+] EMBL CD189825             [AGTAGGCTGATTAGCGAAATGATGCGTTGAGGATGGTCTTTCGGCTTGAAGAGACGGAGATGAACTGAATTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGTCCATGGGACAGGTAAAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCGTGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAACTCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATG                                                                                                                                                                                                                           ]
[+] EMBL CD165797             [                                                        GAGATGAACTGAATTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGTCCATGGGACAGGT AAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCGTGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAACTCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCTTGGACGGACAACAACCACTGGTTTAGATGAATCAGATCGAACTGCTTCACGTCGGAAACTCCTCGAGTTCTGAGTATTTTGTTGAAATATGTCCACATCTTTTGGTAGAAGGATAAGTCCACCATGTTTTTCCGTAGAATTTTCTGACGTCAAATTTGCGCACGTATTCGTGAGCGAACGTGAATTTCGTACATCGGG]




>consensus_6377#0
AGTAGGCTGATTAGCGAAATGATGCGTTGAGGATGGTCTTTCGGCTTGAAGAGACGGAGA
TGAACTGAATTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGT
CCATGGGACAGGTAAAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCG
TGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAAC
TCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCT
TGGACGGACAACAACCACTGGTTTAGATGAATCAGATCGAACTGCTTCACGTCGGAAACT
CCTCGAGTTCTGAGTATTTTGTTGAAATATGTCCACATCTTTTGGTAGAAGGATAAGTCC
ACCATGTTTTTCCGTAGAATTTTCTGACGTCAAATTTGCGCACGTATTCGTGAGCGAACG
TGAATTTCGTACATCGGG

consensusID : consensus_6377#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [ACTCGGCTTACTCTAGAGGATCCCATTGAGTGGCTGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCTTGGACGGACGACAACCACTGGTTTAGATAATCAGCTGATAAAATGAGTTTAGATAATAATCCAATGGAATAATAAGTACTAAATATCTACATTTTTCAAATATTCTAAGAGTGGGTTAAAACTACATAAACTATGGAAATGAAATCACTTACTATACCAATATGGAATCAACAACAGCATGAAACAGACGCTGAAAAAGTACTGCTGATAAGTACCTTCAAAAAAAAACACCCAAATATCCCTACAAACTGCCCCGAAATGCCCTGGTACGGCCGAGAGTGGGGAGAGTCAACTCTCCTTCT]

[+] EMBL CD064728             [ACTCGGCTTACTCTAGAGGATCCCATTGAGTGGCTGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCTTGGACGGACGACAACCACTGGTTTAGATAATCAGCTGATAAAATGAGTTTAGATAATAATCCAATGGAATAATAAGTACTAAATATCTACATTTTTCAAATATTCTAAGAGTGGGTTAAAACTACATAAACTATGGAAATGAAATCACTTACTATACCAATATGGAATCAACAACAGCATGAAACAGACGCTGAAAAAGTACTGCTGATAAGTACCTTCAAAAAAAAACACCCAAATATCCCTACAAACTGCCCCGAAATGCCCTGGTACGGCCGAGAGTGGGGAGAGTCAACTCTCCTTCT]




>consensus_6377#1
ACTCGGCTTACTCTAGAGGATCCCATTGAGTGGCTGTGAATCTGATCTAGTGCTAGTAGT
TCTAGGATGATTGTATGGATTAGAGAAGCTTGGACGGACGACAACCACTGGTTTAGATAA
TCAGCTGATAAAATGAGTTTAGATAATAATCCAATGGAATAATAAGTACTAAATATCTAC
ATTTTTCAAATATTCTAAGAGTGGGTTAAAACTACATAAACTATGGAAATGAAATCACTT
ACTATACCAATATGGAATCAACAACAGCATGAAACAGACGCTGAAAAAGTACTGCTGATA
AGTACCTTCAAAAAAAAACACCCAAATATCCCTACAAACTGCCCCGAAATGCCCTGGTAC
GGCCGAGAGTGGGGAGAGTCAACTCTCCTTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6377#0      AGTAGGCTGATTAGCGAAATGATGCGTTGAGGATGGTCTTTCGGCTTGAAGAGACGGAGA 60
consensus_6377#1      ------------------------------------------------------------
                                                                                  

consensus_6377#0      TGAACTGAATTTGGTTTGAGTTTTGAAAAACTGATAGAAAGCAGCCTTTGCAGCGTCAGT 120
consensus_6377#1      --------ACTCGGCTT-ACTCTAGAGGATCCCATTG--AGTGGCT--------GTGAAT 41
                              * * ** ** * * * **  * *  ** *  **  **         ** * *

consensus_6377#0      CCATGGGACAGGTAAAACAGTGGTAGGTGACTCAGTAGAAGCGTCACTAACAAAACAGCG 180
consensus_6377#1      C-----------TGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCT 90
                      *           * *   **** ***  *    ** *  *  **    *  * *  *** 

consensus_6377#0      TGGACTCATATCATTGTCTGATTTCTGTTTGCATTGATTGATATATTTCGACTCGTCAAC 240
consensus_6377#1      TGGACGGACGACAACCACTGGTTTAGATA---ATCAGCTGATAAAATGAGTTTAGATAAT 147
                      *****  *   **    *** ***   *    **    ***** * *  *  * *  ** 

consensus_6377#0      TCCATGTGAATCTGATCTAGTGCTAGTAGTTCTAGGATGATTGTATGGATTAGAGAAGCT 300
consensus_6377#1      --------AATCCAATGGAATAATA--AGTACTAA-ATATCTACATTTTTCAAATATTCT 196
                              ****  **  * *  **  *** ***  **   *  **   * * * *  **

consensus_6377#0      TGGA-CGGACAACAACCAC-TGGTTTAGATGAATCAGATCGA--ACTGCTTCACGTCGGA 356
consensus_6377#1      AAGAGTGGGTTAAAACTACATAAACTATGGAAATGAAATCACTTACTATACCAATATGGA 256
                        **  **   * *** ** *    **    *** * ***    ***    **    ***

consensus_6377#0      AACTCCTCGAGTTCTGAGTATTTTGTTGAAATATGTCCACATCTTTTGGTAGAAGGATAA 416
consensus_6377#1      ATCAACAACAGCATGAAACAGACGCTGAAAAAGTACTGCTGATAAGTACCTTCAAAAAAA 316
                      * *  *   **     *  *     *  ***  *            *      *  * **

consensus_6377#0      GTCCACCATGTTTTTCCGTAGAATTTTCTGACGTCAAATTTGCGCACGTATTCGTGAGCG 476
consensus_6377#1      AACACCCAAATATCCCTACAAACTGCCCCGAAAT-GCCCTGGTACGGCCGAGAGTGGGGA 375
                        *  ***  * *  *   * * *   * **  *     * *  *        *** *  

consensus_6377#0      AACGTGAATTTCGTACATCGGG 498
consensus_6377#1      GAGTCAACTCTCCTTCT----- 392
                       *    * * ** * *