These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6379#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 440 fasta sequence [TTTATGAGATCACTATGCATAAAAATTGACTGTACAATGGTTAATCTTTCTGTGGAGGTGAAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCTACAATGAAGGTATTTTGTTAGAGATCAAAATAGATTACCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACCTATTCAAAGTTGTATGAAAACTTAAAAAAACCAAGTACATCCTCATCTTCACGATTGCCTTCCATGTCCTTGAA] [+] EMBL CD135600 [TTTATGAGATCACTATGCATAAAAATTGACTGTACAATGGTTAATCTTTCTGTGGAGGTGAAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCTACAATGAAGGTATTTTGTTAGAGATCAAAATAGATTACCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTC ] [+] EMBL CD092865 [ CAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACCTATTCAAAGTTGTATGAAAACTTAAAAAAACCAAGTACATCCTCATCTTCACGATTGCCTTCCATGTCCTTGAA] consensusID : consensus_6379#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 322 fasta sequence [AATCTTCTGTNGGAGGTGAAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACATCCTCATCTTCACGATTGCCTTCCATGTCCTTGAATTG] [-] EMBL CD165355 [AATCTTCTGTNGGAGGTGAAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACATCCTCATCTTCACGATTGCCTTCCATGTCCTTGAATTG] [-] EMBL CD117195 [ TTGTCGTCTTGTAAACTTCTTCATATGTTTCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAATGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAGATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGTTCCACATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6379#0 TTTATGAGATCACTATGCATAAAAATTGACTGTACAATGGTTAATCTTTCTGTGGAGGTG 60 consensus_6379#1 ------------------------------------------AATCTTCTGTNGGAGGTG 18 ****** ******* consensus_6379#0 AAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCT 120 consensus_6379#1 AAACTAGAATAACACCATCTCCGCGAATAAACAGCATAGGTATTGTGCGTTTTGTCGTCT 78 ************************************************************ consensus_6379#0 ACAATGAAGGTATTTTGTTAGAGATCAAAATAGATTACCTTGTAAACTTCTTCATATGTT 180 consensus_6379#1 ----------------------------------------TGTAAACTTCTTCATATGTT 98 ******************** consensus_6379#0 TCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAA 240 consensus_6379#1 TCCTCATCTATCTCTAATGTTGTTACAGTTTCTTCAACATTCCCCAGGATCATGTTCAAA 158 ************************************************************ consensus_6379#0 TGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAG 300 consensus_6379#1 TGTGAGTCAAAAGCATGTAAGACCCCTCGCAGTTCACGGTTACGTTTCATTTTAACGTAG 218 ************************************************************ consensus_6379#0 ATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGT 360 consensus_6379#1 ATCTTTTCATCCAGACTTAGCCTAATGAGGTCCAATGGCTCTTCCACAAGTACAGGTTGT 278 ************************************************************ consensus_6379#0 TCCACCTATTCAAAGTTGTATGAAAACTTAAAAAAACCAAGTACATCCTCATCTTCACGA 420 consensus_6379#1 TCCAC---------------------------------------ATCCTCATCTTCACGA 299 ***** **************** consensus_6379#0 TTGCCTTCCATGTCCTTGAA--- 440 consensus_6379#1 TTGCCTTCCATGTCCTTGAATTG 322 ******************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||