These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 603 fasta sequence [GCGTGGAAAACGACCAAATTCATACCCTTACAGATACTGATCTTGCTAGCTTTCCTTTGGACGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTGTAAGTATCATCTCCCTTTTATTAGACTAAACAGTTTTGTTTAAATCATTTGCGTTACTAAACTTTCAGATAACTTTCTACCTTTTCTAAAAGTTTGAGTTTTTATGAACGATACGCCTAAACTGTCTTCCTAACTGGTTCCTATAATCCCAACTACTTCTACACATCAACTGGAACAATGGAGAGAAGACGCGAATTGCGAGTAAAAGCTTTATTTAAAGGTTAGGTCACGTACTGAAAAACCAGTGTATTTAAAGTGTTATATATAACTCTGGACTTTTAGAAATTTCTGTTAACATGGTAAATATGGTAGCAGTATAGGTTAATATCCAATCATAACCATGACATGATTCTTCATTTTGTAGACGTTTTTGCGAAGCTTCTTTTCAACACTGATTAGGTTAAACGTTTCCTGGCGTTTCTGGGTCTCTAAAGACTTTGACGAGAGATATTTTGGGACTTTCCCAACAACTAGNCACTCATTTGCTTTGTTTCTAGGGCTCCG] [+] EMBL CD169204 [GCGTGGAAAACGACCAAATTCATACCCTTACAGATACTGATCTTGCTAGCTTTCCTTTGGACGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTGTAAGTATCATCTCCCTTTTATTAGACTAAACAGTTTTGTTTAAATCATTTGCGTTACTAAACTTTCAGATAACTTTCTACCTTTTCTAAAAGTTTGAGTTTTTATGAACGATACGCCTAAACTGTCTTCCTAACTGGTTCCTATAATCCCAACTACTTCTACACATCAACTGGAACAATGGAGAGAAGACGCGAATTGCGAGTAAAAGCTTTATTTAAAGGTTAGGTCACGTACTGAAAAACCAGTGTATTTAAAGTGTTATATATAACTCTGGACTTTTAGAAATTTCTGTTAACATGGTAAATATGGTAGCAGTATAGGTTAATATCCAATCATAACCATGACATGATTCTTCATTTTGTAGACGTTTTTGCGAAGCTTCTTTTCAACACTGATTAGGTTAAACGTTTCCTGGCGTTTCTGGGTCTCTAAAGACTTTGACGAGAGATATTTTGGGACTTTCCCAACAACTAGNCACTCATTTGCTTTGTTTCTAGGGCTCCG] [+] EMBL CD169781 [ TACCCTTACAGATTCTGATCTTGCTAGCTTTCCTTTGGAAGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTGTAAGTATCATCTCCCTTTTATTAGACTAAACAGTTTTGTTTAAATCATTTGCGTTACTAAACTTTCAGATAACTTTCTACCTTTTCTAAAAGTTTGAGTTTTTATGAACGATACGCCTAAACTGTCTTCCTAACTGGTTCCTATAATCCCAACTACTTCTACACATCAACTGGAACAATGGAGAGAAGACGCGAATTGCGAGTAAAAGCTTTATTTAAAGGTTAGGTCACGTACTGAAAAACCAGTGTATTTAAAGTGTTATATATAACTCTGGACTTTTAGAAATTTCTGTTAACATGGTAAATATGGTAGCAGTATAGGTTAATATCCAATCATAACCATGACATGATTCTTCATTTTGTGGACGTTTTTGCGAAGCTTCTTTTCCACACTGAT ] consensusID : consensus_6384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TACCCTTACAGATTCTGATCTTGCTAGCTTTCCTTTGGAAGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTCTTTTGGCCACTTTCCAGCAAGAAACTAAAATATGCTCTGATCGATTAACTGAGTTACGATTCAACGTTTGTGAACTATTGAAGAAATATGATCCTGTAAGCTTTAATTAATTAAATAATGTTATCGCAGAAATAATAGGTCAGTACTTATGATCTCAGTAATTAATACTCTTTTAAAGATAAAAACAAATGGTCACAATAATATGTTCATTACGTGCAGTGTTTAACGCTGTACAAAGAAAGCTGAGTTCAAAATACTTGTTTCATTAATTCTAAGTTTTAATTAGTACTATTTTCAGTCCAAATTGTACATTTCACCATACATTAACGTACGCCTGTTACACCTTATGGAGGAGCATAGGCCAACCATCAGAATTCTCCATTCAACTCTGTCCTGGACAATCCTTCCCAGTTGTTTTCAGTTGCTATTCGCCCTTTTGATTTCTGCTTACAATTCTCGACGTAGTATATTCT] [+] EMBL CD169840 [TACCCTTACAGATTCTGATCTTGCTAGCTTTCCTTTGGAAGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTCTTTTGGCCACTTTCCAGCAAGAAACTAAAATATGCTCTGATCGATTAACTGAGTTACGATTCAACGTTTGTGAACTATTGAAGAAATATGATCCTGTAAGCTTTAATTAATTAAATAATGTTATCGCAGAAATAATAGGTCAGTACTTATGATCTCAGTAATTAATACTCTTTTAAAGATAAAAACAAATGGTCACAATAATATGTTCATTACGTGCAGTGTTTAACGCTGTACAAAGAAAGCTGAGTTCAAAATACTTGTTTCATTAATTCTAAGTTTTAATTAGTACTATTTTCAGTCCAAATTGTACATTTCACCATACATTAACGTACGCCTGTTACACCTTATGGAGGAGCATAGGCCAACCATCAGAATTCTCCATTCAACTCTGTCCTGGACAATCCTTCCCAGTTGTTTTCAGTTGCTATTCGCCCTTTTGATTTCTGCTTACAATTCTCGACGTAGTATATTCT] consensusID : consensus_6384#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [ATTTGACAATAGCTGCATGTACACTCCAATAATAGAGGAATGAGTAAAGCATGGGAATATTACAAAATGAGAGAAATTTGAGCGAAAGGATAATTTATTCGCAGAGTGATCGAATACATGAGATAAAAAAATGGTATACAATGATCTTGTTGACCATAATAATTAAAAAAAAACACGTTTGGCTGCCTTTAATACAGTTAAATTAATCTTTATTAAGGAAATTTCTGATATAATTATCAACTTCTTCACCGTCGCTCAATGGTTCAGTAAAGCTAGGATCATATTTCTTCAATAGTTCACAAACGTTGAATCGTAACTCAGTTAATCGATCAGAGCATATTTTAGTTTCTTGCTGGAAAGTGGCCAAAAGAGATCGGAGACCTTGTTCATAGCGATCGAAGAAGTCTTCCAAAGGAAAGCTAGCAAGA] [+] EMBL CD117099 [ATTTGACAATAGCTGCATGTACACTCCAATAATAGAGGAATGAGTAAAGCATGGGAATATTACAAAATGAGAGAAATTTGAGCGAAAGGATAATTTATTCGCAGAGTGATCGAATACATGAGATAAAAAAATGGTATACAATGATCTTGTTGACCATAATAATTAAAAAAAAACACGTTTGGCTGCCTTTAATACAGTTAAATTAATCTTTATTAAGGAAATTTCTGATATAATTATCAACTTCTTCACCGTCGCTCAATGGTTCAGTAAAGCTAGGATCATATTTCTTCAATAGTTCACAAACGTTGAATCGTAACTCAGTTAATCGATCAGAGCATATTTTAGTTTCTTGCTGGAAAGTGGCCAAAAGAGATCGGAGACCTTGTTCATAGCGATCGAAGAAGTCTTCCAAAGGAAAGCTAGCAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6384#0 GCGTGGAAAACGACCAAATTCATACCCTTACAGATACTGATCTTGCTAGCTTTCCTTTGG 60 consensus_6384#1 ----------------------TACCCTTACAGATTCTGATCTTGCTAGCTTTCCTTTGG 38 consensus_6384#2 ------------------------------------------------------------ consensus_6384#0 ACGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTGTAAGTATCATCTCCCTTTTAT 120 consensus_6384#1 AAGACTTCTTCGATCGCTATGAACAAGGTCTCCGATCTCTTTTGGCCACTTTCCAGCAAG 98 consensus_6384#2 ------------------------------------------------------------ consensus_6384#0 TAGACTAAACAGTTTTGTTTAAATCATTTGCGTTACTA---AACTTTCAGATAACTTTCT 177 consensus_6384#1 AAACTAAAATATGCTCTGATCGATTAACTGAGTTACGATTCAACGTTTGTG-AACTATTG 157 consensus_6384#2 ---ATTTGACAATAGCTGCATGTACACTCCAATAATAGAGGAATGAGTAAA--GCATGGG 55 * * * * * ** * consensus_6384#0 ACCTTTTCTAAAAGTTTGAGTTTTTATGAACGATACGCCTAAACTGTCTTCCTAACTGGT 237 consensus_6384#1 AAGAAATATGATCCTGTAAGCTTTAATTAATTAAATAATGTTATCGCAGAAATAATAGGT 217 consensus_6384#2 AATATTACAAAATGAGAGAAATTTGAGCGAAAGGATAATTTATTCGCAGAGTGATCGAAT 115 * * * *** * * * * * * consensus_6384#0 T----CCTATAATCCCAACTACTTCTACACATCAA-CTGGAACAATGGAGAGAAGACGCG 292 consensus_6384#1 CAGTACTTATGATCTCAGTAATTAATACTCTTTTA-AAGATAAAAACAAATGGTCACAAT 276 consensus_6384#2 A------CATGAGATAAAAAAATGGTATACAATGATCTTGTTGACCATAATAATTAAAAA 169 ** * * * * ** * * * * * consensus_6384#0 AAT-TGCG-AGTAAAAGCTTTATTTAAAGGTTAGGTCACGTACTGAAAAACCAGTGTATT 350 consensus_6384#1 AATATGTTCATTACGTGCAGTGTTTAACG-CTGTACAAAGAAAGCTGAGTTCAAAATACT 335 consensus_6384#2 AAAACACG----TTTGGCTGCCTTTAATA--CAGTTAAATTAATCTTTATTAAGGAAATT 223 ** ** ***** * * * * * consensus_6384#0 TAAAGTGTTATATATAACT-CTGGACTTTTAGA-AAT--TTCTGTTAACATGGTA-AATA 405 consensus_6384#1 TGTTTCATTAATTCTAAGT-TTTAATTAGTACT-ATT--TTCAGTCCAAATTGTA-CATT 390 consensus_6384#2 TCTGATATAATTATCAACTTCTTCACCGTCGCTCAATGGTTCAGTAAAGCTAGGATCATA 283 * * * ** * * * * * *** ** * * * * ** consensus_6384#0 TGGTAGCAGTA-TAGGTTAATATCCAATCATAACCATGACATGATTCTTCATTTTGTAGA 464 consensus_6384#1 T-----CACCA-TACATTAACGTACGCCTGTTAC-ACCTTATGGAGGAGCATA----GGC 439 consensus_6384#2 TTTCTTCAATAGTTCACAAACGTTGAATCGTAAC--TCAGTTAATCGATCA------GAG 335 * ** * * ** * * ** * ** consensus_6384#0 CGTTTTTGCGAAGCTTCTTTTCAACACTGATTAGGTTAAACGTTTCCTGGCGTTTCTGGG 524 consensus_6384#1 CAACCATCAGAATTCTCCATTCAACTCTGTCCTGGACAATCCTTCCCAGTTGTTTTCAG- 498 consensus_6384#2 CATATTTT--AGTTTCTTGCTGGAAAGTGGCCAAAAGAGATCGGAGACCTTGTTCATAGC 393 * * * * * ** * *** * consensus_6384#0 TCTCTAAAGACTTTGACGAGAGATATTTTGGGACTTTCCCAACAACTAGNCACTCATTTG 584 consensus_6384#1 TTGCTATTCGCCCTTTTGATTTCTGCTT--ACAATTCTCGACGTAGTATATTCT------ 550 consensus_6384#2 GATCGAAGAAGTCTTCCAAAGGAAAGCTAGCAAGA------------------------- 428 * * * * * * consensus_6384#0 CTTTGTTTCTAGGGCTCCG 603 consensus_6384#1 ------------------- consensus_6384#2 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||