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Schistosoma mansoni
cluster # 6394 cluster # 6394       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_6394#0 length = 615 sequences # 3  
consensus_6394#1 length = 548 sequences # 1  

consensusID : consensus_6394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 615
fasta sequence
                              [TTTGATTAGTGGTAACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGATGTAGTTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAAAGGTCGGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGATGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGTAATTCGTTCTGGGCTTGAGAACTTTTTTGGAGTGTCCTCGTAGATTTTCTGTAAATAGTTTTATTCATTGTTCTGCTCGTTCAGATCGCGTAGGGCTTCTTCATCATTTTCCAGTGCGTTTACTCTTTGTTGCCCTGAGTTTGTATTGTTACAAATTACCAAATAAGGCTGACTAAACATTCATTCAGGTTGTCAGCTCCAAATACGTCAGGCAACCAATAGAAAAACTTAACATGTGACGGAAAAATGCTGTGATTAGCCGATAAAAAACGACATTAAAAATCCGCGACAACATGTAACGTATGAGCGAGAATCAATGACATGACTTTTC]

[+] EMBL CD200100             [TTTGATTAGTGGTAACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGATGTAGTTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAAAGGTCGGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGATGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGTAATTCGTTCTGGGCTTGAGAACTTTTTTGGAGTGTCCTCGTAGATTTTCTGT                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD200053             [TTTGATTAGTGGTAACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGATGTAGCTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGACAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGATTCGACGGATGGAGCCTCAACCACGTGATGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGCAG                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD133208             [                                                                                                                                                                    CTCTCAGCTGATCCAAC TTCTTTTGAAGGGGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATGATTCGATGGGAAAGTCGGTATTCAGCTGACAAGTAATTCGTTCTGGGCTTGTGAACTTTTTTGGAGTGTCCTCGTAGATTTTTACAAAATAGTTTTATTCATTGTTCTGCTCGTTCAGATCGCGTAGGGCTTCTTCATCATTTTCCAGTGCGTTTACTCTTTGTTGCCCTGAGTTTGTATTGTTACAAATTACCAAATAAGGCTGACTAAACATTCATTCAGGTTGTCAGCTCCAAATACGTCAGGCAACCAATAGAAAAACTTAACATGTGACGGAAAAATGCTGTGATTAGCCGATAAAAAACGACATTAAAAATCCGCGACAACATGTAACGTATGAGCGAGAATCAATGACATGACTTTTC]


>consensus_6394#0 TTTGATTAGTGGTAACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGAT GTAGTTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAAA GGTCGGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAA CTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGATGAGGTAATGAATTCCA CTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGTAATTCGTTCTGGGCTT GAGAACTTTTTTGGAGTGTCCTCGTAGATTTTCTGTAAATAGTTTTATTCATTGTTCTGC TCGTTCAGATCGCGTAGGGCTTCTTCATCATTTTCCAGTGCGTTTACTCTTTGTTGCCCT GAGTTTGTATTGTTACAAATTACCAAATAAGGCTGACTAAACATTCATTCAGGTTGTCAG CTCCAAATACGTCAGGCAACCAATAGAAAAACTTAACATGTGACGGAAAAATGCTGTGAT TAGCCGATAAAAAACGACATTAAAAATCCGCGACAACATGTAACGTATGAGCGAGAATCA ATGACATGACTTTTC



consensusID : consensus_6394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence
                              [CGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTAAATATTGAACATTCATATTATCATCATCATCTTCAATAGATTTTCTTTGGAGAAAAAAACCAATTAACAAATATCTATATGAATATATTATTGACAATAAGTAACTAAATTAGAAAAGAGATATTACGGTCAACGCTATTATGATATGATTAGAACATATTGATGAGAATCATTTAAATCGACATCATTCCATGAAGAAAGAGTTAGAATTTCCTAAGAAATGACTTAACAAGCGAAGTTAAAGGGAGAATACTCATGCATTGTCTATAATTAATCCAAGTGTACTAATGTTGAACTTAATAGAAATGATTGACTTTCTTTTTCAGCTTATAATTATGATTACCATTACGACTAAATGTTTGTCATTACATTTTGTTGATCAGAAGGGGTTTTTGTGGATATTTCACTATTTTCATAGTTGAAGTCATGGGTCAATTGAAGCTAGACCACGATGGGAAACCTGGAAGCACTGGACGACCGTTTTGTCCT]

[+] EMBL CD095708             [CGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTAAATATTGAACATTCATATTATCATCATCATCTTCAATAGATTTTCTTTGGAGAAAAAAACCAATTAACAAATATCTATATGAATATATTATTGACAATAAGTAACTAAATTAGAAAAGAGATATTACGGTCAACGCTATTATGATATGATTAGAACATATTGATGAGAATCATTTAAATCGACATCATTCCATGAAGAAAGAGTTAGAATTTCCTAAGAAATGACTTAACAAGCGAAGTTAAAGGGAGAATACTCATGCATTGTCTATAATTAATCCAAGTGTACTAATGTTGAACTTAATAGAAATGATTGACTTTCTTTTTCAGCTTATAATTATGATTACCATTACGACTAAATGTTTGTCATTACATTTTGTTGATCAGAAGGGGTTTTTGTGGATATTTCACTATTTTCATAGTTGAAGTCATGGGTCAATTGAAGCTAGACCACGATGGGAAACCTGGAAGCACTGGACGACCGTTTTGTCCT]


>consensus_6394#1 CGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTAA ATATTGAACATTCATATTATCATCATCATCTTCAATAGATTTTCTTTGGAGAAAAAAACC AATTAACAAATATCTATATGAATATATTATTGACAATAAGTAACTAAATTAGAAAAGAGA TATTACGGTCAACGCTATTATGATATGATTAGAACATATTGATGAGAATCATTTAAATCG ACATCATTCCATGAAGAAAGAGTTAGAATTTCCTAAGAAATGACTTAACAAGCGAAGTTA AAGGGAGAATACTCATGCATTGTCTATAATTAATCCAAGTGTACTAATGTTGAACTTAAT AGAAATGATTGACTTTCTTTTTCAGCTTATAATTATGATTACCATTACGACTAAATGTTT GTCATTACATTTTGTTGATCAGAAGGGGTTTTTGTGGATATTTCACTATTTTCATAGTTG AAGTCATGGGTCAATTGAAGCTAGACCACGATGGGAAACCTGGAAGCACTGGACGACCGT TTTGTCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6394#0      TTTGATTAGTGGTA-ACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGA 59
consensus_6394#1      -CGAATCATTGATCTACATTTTTCATAGAACAATACTCTG----TATGGAAAATGCATTT 55
                          ** * ** *  ****  *****  ***  ** *       * * *     * *   

consensus_6394#0      TGTAGTTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAA 119
consensus_6394#1      TTTAAAT-ATTGAACATTCATATTATCATCATCATCTTCAAT---AGATTTTCTTTGGAG 111
                      * **  *  ** **  *** *     **  *  *  **** *   ** **   ****** 

consensus_6394#0      AGGTCGGGAGGCT--TGATGGCCTGTGT-----TAGTCCTGGCAATGATGGTCTCTCAGC 172
consensus_6394#1      AAAAAAACCAATTAACAAATATCTATATGAATATATTATTGACAATAA--GTAACTAAAT 169
                      *           *    *    ** * *     ** *  ** **** *  **  ** *  

consensus_6394#0      TGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGATGAGGTAAT 232
consensus_6394#1      TAGAAAAGAGATATTACGGTCAACGCTATT-ATGATATGATTAGAACATATTGATGAGAA 228
                      *     *    * **  *    *  * *   ***        *  ** *  *** *  * 

consensus_6394#0      GAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGTAATTCGTT 292
consensus_6394#1      TCATTTAAATCGAC-ATCATTCCATGAAGAAAGAGTTAGA-ATTTCCTAAGAAATGACTT 286
                        ***  * ***   ** **** ***   **   * ***  *  *   *** ***   **

consensus_6394#0      CTGGGCTTGAGAACTTTTTTGGAGTGTCCTCGTAGATTTTCTGTAAATAGTTTTATT--- 349
consensus_6394#1      ---AACAAGCGAAGTTAAAGGGAGAATACTCATGCATTGTCTATAATTAATCCAAGTGTA 343
                           *  * *** **    ****  * *** *  *** *** *** ** *   * *   

consensus_6394#0      -CATTGTTCTGCTCGTTCAGATCGCGTAGGGCTTCTTCATCATTTTCCAGT-GCGTTTAC 407
consensus_6394#1      CTAATGTTGAACTTAATAGAAATG-ATTGACTTTCTTTTTCAGCTTATAATTATGATTAC 402
                        * ****   **   *   *  *  * *   *****  ***  **  * *   * ****

consensus_6394#0      TCTTTGTTGCCCTGAGTTTGT-ATTGTTACAAATTACCAAATAAGGCTGACTAAACATTC 466
consensus_6394#1      -CATTACGACTAAATGTTTGTCATTACATTTTGTTGATCAGAAGGGGTTTTTGTGGATAT 461
                       * **    *     ****** ***        **    *  * ** *   *    **  

consensus_6394#0      ATTCAGGTTGTCAGCTCCAAATACGTCAGGCAACCAATAGAAAAACTTAACATGTGACGG 526
consensus_6394#1      TTCACTATTTTCATAGTTGAAGTCATGGGTCAATTGAAGCTAGACCACGATGGGAAACCT 521
                       *     ** ***      **  * *  * ***   *    * * *   *   *  **  

consensus_6394#0      AAAAATGCTGTGATTAGCCGATAAAAAACGACATTAAAAATCCGCGACAACATGTAACGT 586
consensus_6394#1      GGAAGCACTGGA--CGACCGTTTTGTCCT------------------------------- 548
                        **   ***       *** *                                      

consensus_6394#0      ATGAGCGAGAATCAATGACATGACTTTTC 615
consensus_6394#1      -----------------------------
                                                   




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)