These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 615 fasta sequence [TTTGATTAGTGGTAACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGATGTAGTTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAAAGGTCGGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGATGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGTAATTCGTTCTGGGCTTGAGAACTTTTTTGGAGTGTCCTCGTAGATTTTCTGTAAATAGTTTTATTCATTGTTCTGCTCGTTCAGATCGCGTAGGGCTTCTTCATCATTTTCCAGTGCGTTTACTCTTTGTTGCCCTGAGTTTGTATTGTTACAAATTACCAAATAAGGCTGACTAAACATTCATTCAGGTTGTCAGCTCCAAATACGTCAGGCAACCAATAGAAAAACTTAACATGTGACGGAAAAATGCTGTGATTAGCCGATAAAAAACGACATTAAAAATCCGCGACAACATGTAACGTATGAGCGAGAATCAATGACATGACTTTTC] [+] EMBL CD200100 [TTTGATTAGTGGTAACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGATGTAGTTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAAAGGTCGGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGATGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGTAATTCGTTCTGGGCTTGAGAACTTTTTTGGAGTGTCCTCGTAGATTTTCTGT ] [+] EMBL CD200053 [TTTGATTAGTGGTAACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGATGTAGCTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGACAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGATTCGACGGATGGAGCCTCAACCACGTGATGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGCAG ] [-] EMBL CD133208 [ CTCTCAGCTGATCCAAC TTCTTTTGAAGGGGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATGATTCGATGGGAAAGTCGGTATTCAGCTGACAAGTAATTCGTTCTGGGCTTGTGAACTTTTTTGGAGTGTCCTCGTAGATTTTTACAAAATAGTTTTATTCATTGTTCTGCTCGTTCAGATCGCGTAGGGCTTCTTCATCATTTTCCAGTGCGTTTACTCTTTGTTGCCCTGAGTTTGTATTGTTACAAATTACCAAATAAGGCTGACTAAACATTCATTCAGGTTGTCAGCTCCAAATACGTCAGGCAACCAATAGAAAAACTTAACATGTGACGGAAAAATGCTGTGATTAGCCGATAAAAAACGACATTAAAAATCCGCGACAACATGTAACGTATGAGCGAGAATCAATGACATGACTTTTC] consensusID : consensus_6394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 548 fasta sequence [CGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTAAATATTGAACATTCATATTATCATCATCATCTTCAATAGATTTTCTTTGGAGAAAAAAACCAATTAACAAATATCTATATGAATATATTATTGACAATAAGTAACTAAATTAGAAAAGAGATATTACGGTCAACGCTATTATGATATGATTAGAACATATTGATGAGAATCATTTAAATCGACATCATTCCATGAAGAAAGAGTTAGAATTTCCTAAGAAATGACTTAACAAGCGAAGTTAAAGGGAGAATACTCATGCATTGTCTATAATTAATCCAAGTGTACTAATGTTGAACTTAATAGAAATGATTGACTTTCTTTTTCAGCTTATAATTATGATTACCATTACGACTAAATGTTTGTCATTACATTTTGTTGATCAGAAGGGGTTTTTGTGGATATTTCACTATTTTCATAGTTGAAGTCATGGGTCAATTGAAGCTAGACCACGATGGGAAACCTGGAAGCACTGGACGACCGTTTTGTCCT] [+] EMBL CD095708 [CGAATCATTGATCTACATTTTTCATAGAACAATACTCTGTATGGAAAATGCATTTTTTAAATATTGAACATTCATATTATCATCATCATCTTCAATAGATTTTCTTTGGAGAAAAAAACCAATTAACAAATATCTATATGAATATATTATTGACAATAAGTAACTAAATTAGAAAAGAGATATTACGGTCAACGCTATTATGATATGATTAGAACATATTGATGAGAATCATTTAAATCGACATCATTCCATGAAGAAAGAGTTAGAATTTCCTAAGAAATGACTTAACAAGCGAAGTTAAAGGGAGAATACTCATGCATTGTCTATAATTAATCCAAGTGTACTAATGTTGAACTTAATAGAAATGATTGACTTTCTTTTTCAGCTTATAATTATGATTACCATTACGACTAAATGTTTGTCATTACATTTTGTTGATCAGAAGGGGTTTTTGTGGATATTTCACTATTTTCATAGTTGAAGTCATGGGTCAATTGAAGCTAGACCACGATGGGAAACCTGGAAGCACTGGACGACCGTTTTGTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6394#0 TTTGATTAGTGGTA-ACATCCTTCATGAAACTTTATTTGAGTACTTTTGTGGTCGTAGGA 59 consensus_6394#1 -CGAATCATTGATCTACATTTTTCATAGAACAATACTCTG----TATGGAAAATGCATTT 55 ** * ** * **** ***** *** ** * * * * * * consensus_6394#0 TGTAGTTCGTTAAATTTTCTTCGGGACACGACTAGTTTCAGTTTCAGTTTCAGTTTGGAA 119 consensus_6394#1 TTTAAAT-ATTGAACATTCATATTATCATCATCATCTTCAAT---AGATTTTCTTTGGAG 111 * ** * ** ** *** * ** * * **** * ** ** ****** consensus_6394#0 AGGTCGGGAGGCT--TGATGGCCTGTGT-----TAGTCCTGGCAATGATGGTCTCTCAGC 172 consensus_6394#1 AAAAAAACCAATTAACAAATATCTATATGAATATATTATTGACAATAA--GTAACTAAAT 169 * * * ** * * ** * ** **** * ** ** * consensus_6394#0 TGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGATGAGGTAAT 232 consensus_6394#1 TAGAAAAGAGATATTACGGTCAACGCTATT-ATGATATGATTAGAACATATTGATGAGAA 228 * * * ** * * * * *** * ** * *** * * consensus_6394#0 GAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGTAATTCGTT 292 consensus_6394#1 TCATTTAAATCGAC-ATCATTCCATGAAGAAAGAGTTAGA-ATTTCCTAAGAAATGACTT 286 *** * *** ** **** *** ** * *** * * *** *** ** consensus_6394#0 CTGGGCTTGAGAACTTTTTTGGAGTGTCCTCGTAGATTTTCTGTAAATAGTTTTATT--- 349 consensus_6394#1 ---AACAAGCGAAGTTAAAGGGAGAATACTCATGCATTGTCTATAATTAATCCAAGTGTA 343 * * *** ** **** * *** * *** *** *** ** * * * consensus_6394#0 -CATTGTTCTGCTCGTTCAGATCGCGTAGGGCTTCTTCATCATTTTCCAGT-GCGTTTAC 407 consensus_6394#1 CTAATGTTGAACTTAATAGAAATG-ATTGACTTTCTTTTTCAGCTTATAATTATGATTAC 402 * **** ** * * * * * ***** *** ** * * * **** consensus_6394#0 TCTTTGTTGCCCTGAGTTTGT-ATTGTTACAAATTACCAAATAAGGCTGACTAAACATTC 466 consensus_6394#1 -CATTACGACTAAATGTTTGTCATTACATTTTGTTGATCAGAAGGGGTTTTTGTGGATAT 461 * ** * ****** *** ** * * ** * * ** consensus_6394#0 ATTCAGGTTGTCAGCTCCAAATACGTCAGGCAACCAATAGAAAAACTTAACATGTGACGG 526 consensus_6394#1 TTCACTATTTTCATAGTTGAAGTCATGGGTCAATTGAAGCTAGACCACGATGGGAAACCT 521 * ** *** ** * * * *** * * * * * * ** consensus_6394#0 AAAAATGCTGTGATTAGCCGATAAAAAACGACATTAAAAATCCGCGACAACATGTAACGT 586 consensus_6394#1 GGAAGCACTGGA--CGACCGTTTTGTCCT------------------------------- 548 ** *** *** * consensus_6394#0 ATGAGCGAGAATCAATGACATGACTTTTC 615 consensus_6394#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||